Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS15400

Experiment: Ying_Nucleobase14 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS15390 and ABIE51_RS15395 are separated by 8 nucleotidesABIE51_RS15395 and ABIE51_RS15400 are separated by 64 nucleotidesABIE51_RS15400 and ABIE51_RS15405 overlap by 4 nucleotidesABIE51_RS15405 and ABIE51_RS15410 are separated by 20 nucleotides ABIE51_RS15390: ABIE51_RS15390 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 3,341,792 to 3,342,931 _RS15390 ABIE51_RS15395: ABIE51_RS15395 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 3,342,940 to 3,343,440 _RS15395 ABIE51_RS15400: ABIE51_RS15400 - Trm112 family protein, at 3,343,505 to 3,343,774 _RS15400 ABIE51_RS15405: ABIE51_RS15405 - carboxylating nicotinate-nucleotide diphosphorylase, at 3,343,771 to 3,344,637 _RS15405 ABIE51_RS15410: ABIE51_RS15410 - FHA domain-containing protein, at 3,344,658 to 3,345,458 _RS15410 Position (kb) 3343 3344Strain fitness (log2 ratio) -1 0 1 2at 3343.446 kb on + strandat 3343.446 kb on + strandat 3343.446 kb on + strandat 3343.447 kb on - strandat 3343.447 kb on - strandat 3343.447 kb on - strandat 3343.447 kb on - strandat 3343.466 kb on + strandat 3343.466 kb on + strandat 3343.466 kb on + strandat 3343.466 kb on + strandat 3343.466 kb on + strandat 3343.466 kb on + strandat 3343.466 kb on + strandat 3343.467 kb on - strandat 3343.467 kb on - strandat 3343.467 kb on - strandat 3343.467 kb on - strandat 3343.471 kb on + strandat 3343.472 kb on - strandat 3343.691 kb on + strand, within ABIE51_RS15400at 3343.691 kb on + strand, within ABIE51_RS15400at 3343.691 kb on + strand, within ABIE51_RS15400at 3343.805 kb on + strandat 3343.806 kb on - strandat 3343.806 kb on - strandat 3343.895 kb on - strand, within ABIE51_RS15405at 3343.895 kb on - strand, within ABIE51_RS15405at 3344.061 kb on - strand, within ABIE51_RS15405at 3344.061 kb on - strand, within ABIE51_RS15405at 3344.128 kb on + strand, within ABIE51_RS15405at 3344.142 kb on - strand, within ABIE51_RS15405at 3344.142 kb on - strand, within ABIE51_RS15405at 3344.209 kb on + strand, within ABIE51_RS15405at 3344.209 kb on + strand, within ABIE51_RS15405at 3344.209 kb on + strand, within ABIE51_RS15405at 3344.210 kb on - strand, within ABIE51_RS15405at 3344.210 kb on - strand, within ABIE51_RS15405at 3344.659 kb on + strandat 3344.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1
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3,343,446 + -0.7
3,343,446 + +0.4
3,343,446 + -0.2
3,343,447 - -0.3
3,343,447 - -0.1
3,343,447 - -0.9
3,343,447 - +0.1
3,343,466 + -1.0
3,343,466 + +0.5
3,343,466 + +0.4
3,343,466 + +0.5
3,343,466 + +0.2
3,343,466 + +0.4
3,343,466 + -0.7
3,343,467 - +1.2
3,343,467 - +0.3
3,343,467 - -0.0
3,343,467 - +0.1
3,343,471 + +0.0
3,343,472 - +0.6
3,343,691 + ABIE51_RS15400 0.69 -0.9
3,343,691 + ABIE51_RS15400 0.69 +1.8
3,343,691 + ABIE51_RS15400 0.69 -0.0
3,343,805 + +0.0
3,343,806 - +1.2
3,343,806 - +0.4
3,343,895 - ABIE51_RS15405 0.14 +0.4
3,343,895 - ABIE51_RS15405 0.14 +0.3
3,344,061 - ABIE51_RS15405 0.33 +0.8
3,344,061 - ABIE51_RS15405 0.33 +0.2
3,344,128 + ABIE51_RS15405 0.41 -0.6
3,344,142 - ABIE51_RS15405 0.43 -0.7
3,344,142 - ABIE51_RS15405 0.43 -0.4
3,344,209 + ABIE51_RS15405 0.51 -0.1
3,344,209 + ABIE51_RS15405 0.51 -0.4
3,344,209 + ABIE51_RS15405 0.51 -0.5
3,344,210 - ABIE51_RS15405 0.51 +0.2
3,344,210 - ABIE51_RS15405 0.51 +0.4
3,344,659 + -0.5
3,344,659 + -0.3

Or see this region's nucleotide sequence