Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01820 and ABIE51_RS01825 are separated by 332 nucleotides ABIE51_RS01825 and ABIE51_RS01830 are separated by 39 nucleotides ABIE51_RS01830 and ABIE51_RS01835 are separated by 2 nucleotides
ABIE51_RS01820: ABIE51_RS01820 - PD40 domain-containing protein, at 404,862 to 405,791
_RS01820
ABIE51_RS01825: ABIE51_RS01825 - SDR family oxidoreductase, at 406,124 to 406,876
_RS01825
ABIE51_RS01830: ABIE51_RS01830 - GNAT family N-acetyltransferase, at 406,916 to 407,371
_RS01830
ABIE51_RS01835: ABIE51_RS01835 - porphobilinogen synthase, at 407,374 to 408,366
_RS01835
Position (kb) 406
407 Strain fitness (log2 ratio) -2
-1
0
1 at 405.210 kb on + strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.255 kb on + strand, within ABIE51_RS01820 at 405.531 kb on + strand, within ABIE51_RS01820 at 405.532 kb on - strand, within ABIE51_RS01820 at 405.532 kb on - strand, within ABIE51_RS01820 at 405.600 kb on + strand, within ABIE51_RS01820 at 405.742 kb on - strand at 405.742 kb on - strand at 405.813 kb on - strand at 405.813 kb on - strand at 405.813 kb on - strand at 406.048 kb on + strand at 406.048 kb on + strand at 406.048 kb on + strand at 406.049 kb on - strand at 406.049 kb on - strand at 406.049 kb on - strand at 406.058 kb on + strand at 406.058 kb on + strand at 406.059 kb on - strand at 406.125 kb on + strand at 406.125 kb on + strand at 406.125 kb on + strand at 406.125 kb on + strand at 406.164 kb on + strand at 406.164 kb on + strand at 406.165 kb on - strand at 406.165 kb on - strand at 406.165 kb on - strand at 406.165 kb on - strand at 406.165 kb on - strand at 406.299 kb on + strand, within ABIE51_RS01825 at 406.300 kb on - strand, within ABIE51_RS01825 at 406.300 kb on - strand, within ABIE51_RS01825 at 406.300 kb on - strand, within ABIE51_RS01825 at 406.390 kb on + strand, within ABIE51_RS01825 at 406.402 kb on - strand, within ABIE51_RS01825 at 406.402 kb on - strand, within ABIE51_RS01825 at 406.410 kb on + strand, within ABIE51_RS01825 at 406.410 kb on + strand, within ABIE51_RS01825 at 406.410 kb on + strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.791 kb on + strand, within ABIE51_RS01825 at 406.792 kb on - strand, within ABIE51_RS01825 at 406.938 kb on + strand at 406.939 kb on - strand at 406.939 kb on - strand at 406.939 kb on - strand at 406.980 kb on + strand, within ABIE51_RS01830 at 406.980 kb on + strand, within ABIE51_RS01830 at 406.981 kb on - strand, within ABIE51_RS01830 at 406.981 kb on - strand, within ABIE51_RS01830 at 406.981 kb on - strand, within ABIE51_RS01830
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 405,210 + ABIE51_RS01820 0.37 +0.2 405,211 - ABIE51_RS01820 0.38 -1.0 405,211 - ABIE51_RS01820 0.38 +0.1 405,211 - ABIE51_RS01820 0.38 +0.3 405,211 - ABIE51_RS01820 0.38 +0.1 405,255 + ABIE51_RS01820 0.42 -1.5 405,531 + ABIE51_RS01820 0.72 +0.1 405,532 - ABIE51_RS01820 0.72 -0.4 405,532 - ABIE51_RS01820 0.72 +0.2 405,600 + ABIE51_RS01820 0.79 +0.5 405,742 - +0.3 405,742 - -0.2 405,813 - -0.1 405,813 - -0.2 405,813 - -2.0 406,048 + -0.1 406,048 + -1.0 406,048 + -0.4 406,049 - +0.3 406,049 - +0.1 406,049 - +0.1 406,058 + +0.1 406,058 + -0.2 406,059 - -0.1 406,125 + -0.8 406,125 + -1.4 406,125 + -0.0 406,125 + -0.1 406,164 + +0.1 406,164 + -0.0 406,165 - +0.4 406,165 - -0.1 406,165 - -0.2 406,165 - +0.4 406,165 - -0.4 406,299 + ABIE51_RS01825 0.23 -0.4 406,300 - ABIE51_RS01825 0.23 +1.6 406,300 - ABIE51_RS01825 0.23 +0.2 406,300 - ABIE51_RS01825 0.23 -0.7 406,390 + ABIE51_RS01825 0.35 -0.7 406,402 - ABIE51_RS01825 0.37 +0.1 406,402 - ABIE51_RS01825 0.37 +0.1 406,410 + ABIE51_RS01825 0.38 -0.1 406,410 + ABIE51_RS01825 0.38 +1.3 406,410 + ABIE51_RS01825 0.38 -0.2 406,411 - ABIE51_RS01825 0.38 +0.0 406,411 - ABIE51_RS01825 0.38 -0.0 406,411 - ABIE51_RS01825 0.38 +0.9 406,411 - ABIE51_RS01825 0.38 -0.3 406,791 + ABIE51_RS01825 0.89 +0.1 406,792 - ABIE51_RS01825 0.89 +0.8 406,938 + -1.6 406,939 - -0.1 406,939 - +0.2 406,939 - +0.0 406,980 + ABIE51_RS01830 0.14 -0.2 406,980 + ABIE51_RS01830 0.14 -0.1 406,981 - ABIE51_RS01830 0.14 +0.8 406,981 - ABIE51_RS01830 0.14 +0.2 406,981 - ABIE51_RS01830 0.14 -0.4
Or see this region's nucleotide sequence