Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS09715

Experiment: Ying_Nucleobase14 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS09710 and ABIE51_RS09715 are separated by 3 nucleotidesABIE51_RS09715 and ABIE51_RS09720 are separated by 26 nucleotidesABIE51_RS09720 and ABIE51_RS09725 are separated by 231 nucleotides ABIE51_RS09710: ABIE51_RS09710 - HlyD family secretion protein, at 2,096,072 to 2,097,253 _RS09710 ABIE51_RS09715: ABIE51_RS09715 - DUF3302 domain-containing protein, at 2,097,257 to 2,097,853 _RS09715 ABIE51_RS09720: ABIE51_RS09720 - response regulator, at 2,097,880 to 2,098,236 _RS09720 ABIE51_RS09725: ABIE51_RS09725 - response regulator, at 2,098,468 to 2,099,073 _RS09725 Position (kb) 2097 2098Strain fitness (log2 ratio) -1 0 1at 2096.884 kb on - strand, within ABIE51_RS09710at 2097.067 kb on - strand, within ABIE51_RS09710at 2097.067 kb on - strand, within ABIE51_RS09710at 2097.067 kb on - strand, within ABIE51_RS09710at 2097.258 kb on + strandat 2097.258 kb on + strandat 2097.258 kb on + strandat 2097.259 kb on - strandat 2097.259 kb on - strandat 2098.163 kb on + strand, within ABIE51_RS09720at 2098.275 kb on + strandat 2098.289 kb on + strandat 2098.289 kb on + strandat 2098.289 kb on + strandat 2098.419 kb on + strandat 2098.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1
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2,096,884 - ABIE51_RS09710 0.69 +1.0
2,097,067 - ABIE51_RS09710 0.84 -0.1
2,097,067 - ABIE51_RS09710 0.84 -0.2
2,097,067 - ABIE51_RS09710 0.84 -0.1
2,097,258 + -0.2
2,097,258 + +0.2
2,097,258 + -0.0
2,097,259 - +1.2
2,097,259 - -0.5
2,098,163 + ABIE51_RS09720 0.79 -0.5
2,098,275 + -0.2
2,098,289 + +0.1
2,098,289 + +0.8
2,098,289 + +0.2
2,098,419 + -0.1
2,098,448 - -0.1

Or see this region's nucleotide sequence