Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS17500

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
3,820,414	+		ABIE51_RS17495	0.77	-0.5
3,820,414	+		ABIE51_RS17495	0.77	+1.0
3,820,414	+		ABIE51_RS17495	0.77	-2.3
3,820,414	+		ABIE51_RS17495	0.77	-1.3
3,820,414	+		ABIE51_RS17495	0.77	-0.9
3,820,414	+		ABIE51_RS17495	0.77	-2.0
3,820,414	+		ABIE51_RS17495	0.77	-0.5
3,820,414	+		ABIE51_RS17495	0.77	-0.1
3,820,415	-		ABIE51_RS17495	0.77	-0.1
3,820,415	-		ABIE51_RS17495	0.77	-1.5
3,820,415	-		ABIE51_RS17495	0.77	-0.0
3,820,471	+		ABIE51_RS17495	0.79	-0.5
3,820,471	+		ABIE51_RS17495	0.79	-0.3
3,820,471	+		ABIE51_RS17495	0.79	-0.6
3,820,471	+		ABIE51_RS17495	0.79	-0.0
3,820,471	+		ABIE51_RS17495	0.79	+1.0
3,820,472	-		ABIE51_RS17495	0.79	-1.3
3,820,472	-		ABIE51_RS17495	0.79	-1.1
3,820,501	+		ABIE51_RS17495	0.80	+0.6
3,820,501	+		ABIE51_RS17495	0.80	-1.2
3,820,501	+		ABIE51_RS17495	0.80	-1.2
3,820,501	+		ABIE51_RS17495	0.80	+0.2
3,820,502	-		ABIE51_RS17495	0.80	+0.3
3,820,502	-		ABIE51_RS17495	0.80	+2.0
3,820,513	+		ABIE51_RS17495	0.81	+2.0
3,820,513	+		ABIE51_RS17495	0.81	+0.4
3,820,513	+		ABIE51_RS17495	0.81	-0.7
3,820,513	+		ABIE51_RS17495	0.81	+0.8
3,820,513	+		ABIE51_RS17495	0.81	-1.6
3,820,514	-		ABIE51_RS17495	0.81	-0.8
3,820,514	-		ABIE51_RS17495	0.81	-1.9
3,820,514	-		ABIE51_RS17495	0.81	-0.5
3,820,514	-		ABIE51_RS17495	0.81	-2.1
3,820,514	-		ABIE51_RS17495	0.81	-0.0
3,820,514	-		ABIE51_RS17495	0.81	-1.3
3,820,514	-		ABIE51_RS17495	0.81	-0.0
3,820,588	+		ABIE51_RS17495	0.83	-0.0
3,820,588	+		ABIE51_RS17495	0.83	-0.9
3,820,588	+		ABIE51_RS17495	0.83	-1.0
3,820,588	+		ABIE51_RS17495	0.83	-0.7
3,820,588	+		ABIE51_RS17495	0.83	-1.1
3,820,588	+		ABIE51_RS17495	0.83	-1.8
3,820,588	+		ABIE51_RS17495	0.83	+0.2
3,820,588	+		ABIE51_RS17495	0.83	-0.0
3,820,588	+		ABIE51_RS17495	0.83	-1.3
3,820,588	+		ABIE51_RS17495	0.83	+0.2
3,820,588	+		ABIE51_RS17495	0.83	-0.4
3,820,588	+		ABIE51_RS17495	0.83	-1.2
3,820,588	+		ABIE51_RS17495	0.83	-0.8
3,820,589	-		ABIE51_RS17495	0.83	-1.1
3,820,589	-		ABIE51_RS17495	0.83	-1.8
3,820,589	-		ABIE51_RS17495	0.83	-1.0
3,820,589	-		ABIE51_RS17495	0.83	-3.3
3,820,589	-		ABIE51_RS17495	0.83	+0.1
3,820,589	-		ABIE51_RS17495	0.83	-1.6
3,820,589	-		ABIE51_RS17495	0.83	+0.3
3,820,589	-		ABIE51_RS17495	0.83	-1.0
3,820,589	-		ABIE51_RS17495	0.83	-0.4
3,820,709	-		ABIE51_RS17495	0.88	-1.5
3,820,730	+		ABIE51_RS17495	0.88	-1.8
3,820,731	-		ABIE51_RS17495	0.88	+0.6
3,821,059	+				+0.1
3,821,059	+				-2.4
3,821,059	+				-0.9
3,821,059	+				-1.0
3,821,059	+				-0.5
3,821,059	+				+0.1
3,821,059	+				-0.2
3,821,059	+				-1.0
3,821,059	+				-1.6
3,821,059	+				-0.0
3,821,059	+				-0.1
3,821,059	+				-0.5
3,821,059	+				-0.2
3,821,060	-				-0.8
3,821,060	-				-1.2
3,821,060	-				+0.0
3,821,060	-				+1.0
3,821,060	-				-0.4
3,821,060	-				-0.2
3,821,060	-				-1.6
3,821,060	-				-0.9
3,821,060	-				-0.9
3,821,060	-				-1.1
3,821,060	-				-0.5
3,821,060	-				+0.6
3,821,060	-				-0.1
3,821,073	+				-0.8
3,821,073	+				-0.8
3,821,073	+				-0.9
3,821,073	+				-0.9
3,821,073	+				-0.7
3,821,073	+				-0.5
3,821,074	-				+0.2
3,821,074	-				-0.5
3,821,074	-				-1.2
3,821,074	-				-0.6
3,821,074	-				-0.6
3,821,074	-				+0.2
3,821,074	-				-0.5
3,821,074	-				-0.2
3,821,074	-				-0.2
3,821,074	-				-0.1
3,821,074	-				+0.2
3,821,076	-				-0.7
3,821,081	-				-0.0
3,821,092	-				-0.5
3,821,108	+				-0.4
3,821,108	+				+0.5
3,821,108	+				-1.3
3,821,108	+				+0.2
3,821,108	+				+0.0
3,821,108	+				-0.0
3,821,108	+				-1.0
3,821,109	-				-0.1
3,821,109	-				-0.8
3,821,109	-				+0.2
3,821,301	+				-0.2
3,821,301	+				-0.1
3,821,301	+				-0.3
3,821,301	+				-0.3
3,821,301	+				-0.1
3,821,301	+				-0.7
3,821,301	+				-0.3
3,821,301	+				-0.8
3,821,302	-				-0.7
3,821,302	-				-0.3
3,821,585	+		ABIE51_RS17500	0.29	-0.6
3,821,585	+		ABIE51_RS17500	0.29	+1.0
3,821,585	+		ABIE51_RS17500	0.29	-0.4
3,821,585	+		ABIE51_RS17500	0.29	-0.9
3,821,585	+		ABIE51_RS17500	0.29	-1.3
3,821,585	+		ABIE51_RS17500	0.29	-0.7
3,821,586	-		ABIE51_RS17500	0.29	-0.3
3,821,586	-		ABIE51_RS17500	0.29	-0.3
3,821,586	-		ABIE51_RS17500	0.29	-0.7
3,821,586	-		ABIE51_RS17500	0.29	-0.9
3,821,586	-		ABIE51_RS17500	0.29	-0.6
3,821,586	-		ABIE51_RS17500	0.29	-0.7
3,821,586	-		ABIE51_RS17500	0.29	-0.7
3,821,586	-		ABIE51_RS17500	0.29	-0.8
3,821,612	+		ABIE51_RS17500	0.31	-0.7
3,821,612	+		ABIE51_RS17500	0.31	-0.6
3,821,612	+		ABIE51_RS17500	0.31	-0.4
3,821,612	+		ABIE51_RS17500	0.31	-2.1
3,821,612	+		ABIE51_RS17500	0.31	-0.3
3,821,612	+		ABIE51_RS17500	0.31	-0.3
3,821,612	+		ABIE51_RS17500	0.31	+0.1
3,821,612	+		ABIE51_RS17500	0.31	-0.4
3,821,612	+		ABIE51_RS17500	0.31	-0.4
3,821,612	+		ABIE51_RS17500	0.31	-0.2
3,821,612	+		ABIE51_RS17500	0.31	-0.1
3,821,612	+		ABIE51_RS17500	0.31	-0.5
3,821,613	-		ABIE51_RS17500	0.32	+0.8
3,821,613	-		ABIE51_RS17500	0.32	-0.7
3,821,613	-		ABIE51_RS17500	0.32	-0.7
3,821,613	-		ABIE51_RS17500	0.32	-0.4
3,821,613	-		ABIE51_RS17500	0.32	-0.5
3,821,613	-		ABIE51_RS17500	0.32	-0.8
3,821,613	-		ABIE51_RS17500	0.32	-0.3
3,821,613	-		ABIE51_RS17500	0.32	-0.9
3,821,613	-		ABIE51_RS17500	0.32	-0.7
3,821,613	-		ABIE51_RS17500	0.32	-0.1
3,821,613	-		ABIE51_RS17500	0.32	-0.9
3,821,613	-		ABIE51_RS17500	0.32	-0.8
3,821,613	-		ABIE51_RS17500	0.32	+0.6
3,821,613	-		ABIE51_RS17500	0.32	+0.9
3,821,684	+		ABIE51_RS17500	0.39	-1.1
3,821,684	+		ABIE51_RS17500	0.39	-0.4
3,821,684	+		ABIE51_RS17500	0.39	-0.9
3,821,684	+		ABIE51_RS17500	0.39	-0.9
3,821,684	+		ABIE51_RS17500	0.39	-1.0
3,821,684	+		ABIE51_RS17500	0.39	-0.3
3,821,684	+		ABIE51_RS17500	0.39	+0.5
3,821,684	+		ABIE51_RS17500	0.39	-0.1
3,821,684	+		ABIE51_RS17500	0.39	-0.7
3,821,685	-		ABIE51_RS17500	0.39	-0.6
3,821,685	-		ABIE51_RS17500	0.39	-0.3
3,821,685	-		ABIE51_RS17500	0.39	+0.6
3,821,685	-		ABIE51_RS17500	0.39	-1.1
3,821,685	-		ABIE51_RS17500	0.39	+2.5
3,821,685	-		ABIE51_RS17500	0.39	-2.4
3,821,924	+		ABIE51_RS17500	0.65	-1.4
3,821,925	-		ABIE51_RS17500	0.65	-0.9
3,821,925	-		ABIE51_RS17500	0.65	-0.8
3,821,925	-		ABIE51_RS17500	0.65	-1.2
3,821,925	-		ABIE51_RS17500	0.65	-0.5
3,821,925	-		ABIE51_RS17500	0.65	-0.6
3,821,925	-		ABIE51_RS17500	0.65	-0.4
3,821,925	-		ABIE51_RS17500	0.65	-0.4
3,822,289	-				-1.2
3,822,482	+				-0.8
3,822,482	+				-0.9
3,822,482	+				+0.6
3,822,483	-				-0.5
3,822,851	+		ABIE51_RS17505	0.20	-2.0
3,822,851	+		ABIE51_RS17505	0.20	+0.3
3,822,851	+		ABIE51_RS17505	0.20	-0.7
3,822,851	+		ABIE51_RS17505	0.20	-0.4
3,822,852	-		ABIE51_RS17505	0.20	-0.4
3,822,852	-		ABIE51_RS17505	0.20	-0.3
3,822,852	-		ABIE51_RS17505	0.20	-0.7
3,822,852	-		ABIE51_RS17505	0.20	-1.0
3,822,852	-		ABIE51_RS17505	0.20	-0.5
3,822,920	+		ABIE51_RS17505	0.23	-0.4
3,822,920	+		ABIE51_RS17505	0.23	-0.4
3,822,920	+		ABIE51_RS17505	0.23	+0.4
3,822,920	+		ABIE51_RS17505	0.23	-0.8
3,822,921	-		ABIE51_RS17505	0.23	-0.5