Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS16735

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS16730 and ABIE51_RS16735 are separated by 24 nucleotidesABIE51_RS16735 and ABIE51_RS16740 are separated by 8 nucleotidesABIE51_RS16740 and ABIE51_RS16745 overlap by 4 nucleotides ABIE51_RS16730: ABIE51_RS16730 - flagellar filament capping protein FliD, at 3,638,328 to 3,639,650 _RS16730 ABIE51_RS16735: ABIE51_RS16735 - flagellar export chaperone FliS, at 3,639,675 to 3,640,067 _RS16735 ABIE51_RS16740: ABIE51_RS16740 - hypothetical protein, at 3,640,076 to 3,640,378 _RS16740 ABIE51_RS16745: ABIE51_RS16745 - PilZ domain-containing protein, at 3,640,375 to 3,640,935 _RS16745 Position (kb) 3639 3640 3641Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3638.928 kb on + strand, within ABIE51_RS16730at 3638.928 kb on + strand, within ABIE51_RS16730at 3639.153 kb on + strand, within ABIE51_RS16730at 3639.153 kb on + strand, within ABIE51_RS16730at 3639.153 kb on + strand, within ABIE51_RS16730at 3639.153 kb on + strand, within ABIE51_RS16730at 3639.153 kb on + strand, within ABIE51_RS16730at 3639.153 kb on + strand, within ABIE51_RS16730at 3639.153 kb on + strand, within ABIE51_RS16730at 3639.153 kb on + strand, within ABIE51_RS16730at 3639.153 kb on + strand, within ABIE51_RS16730at 3639.153 kb on + strand, within ABIE51_RS16730at 3639.154 kb on + strand, within ABIE51_RS16730at 3639.154 kb on - strand, within ABIE51_RS16730at 3639.154 kb on - strand, within ABIE51_RS16730at 3639.154 kb on - strand, within ABIE51_RS16730at 3639.154 kb on - strand, within ABIE51_RS16730at 3639.154 kb on - strand, within ABIE51_RS16730at 3639.192 kb on + strand, within ABIE51_RS16730at 3639.192 kb on + strand, within ABIE51_RS16730at 3639.193 kb on - strand, within ABIE51_RS16730at 3639.418 kb on - strand, within ABIE51_RS16730at 3639.513 kb on + strand, within ABIE51_RS16730at 3639.513 kb on + strand, within ABIE51_RS16730at 3639.513 kb on + strand, within ABIE51_RS16730at 3639.514 kb on - strand, within ABIE51_RS16730at 3639.514 kb on - strand, within ABIE51_RS16730at 3639.525 kb on + strandat 3639.525 kb on + strandat 3639.526 kb on - strandat 3639.526 kb on - strandat 3639.526 kb on - strandat 3639.568 kb on - strandat 3639.657 kb on + strandat 3639.697 kb on - strandat 3639.942 kb on + strand, within ABIE51_RS16735at 3639.942 kb on + strand, within ABIE51_RS16735at 3639.942 kb on + strand, within ABIE51_RS16735at 3639.942 kb on + strand, within ABIE51_RS16735at 3639.942 kb on + strand, within ABIE51_RS16735at 3639.942 kb on + strand, within ABIE51_RS16735at 3639.943 kb on - strand, within ABIE51_RS16735at 3639.943 kb on - strand, within ABIE51_RS16735at 3639.943 kb on - strand, within ABIE51_RS16735at 3640.895 kb on + strandat 3640.895 kb on + strandat 3640.895 kb on + strandat 3640.895 kb on + strandat 3640.895 kb on + strandat 3640.895 kb on + strandat 3640.895 kb on + strandat 3640.896 kb on - strandat 3640.896 kb on - strandat 3640.896 kb on - strandat 3641.025 kb on - strandat 3641.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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3,638,928 + ABIE51_RS16730 0.45 -0.5
3,638,928 + ABIE51_RS16730 0.45 -0.1
3,639,153 + ABIE51_RS16730 0.62 -0.0
3,639,153 + ABIE51_RS16730 0.62 +0.2
3,639,153 + ABIE51_RS16730 0.62 +0.3
3,639,153 + ABIE51_RS16730 0.62 +0.2
3,639,153 + ABIE51_RS16730 0.62 -0.1
3,639,153 + ABIE51_RS16730 0.62 -0.5
3,639,153 + ABIE51_RS16730 0.62 -0.1
3,639,153 + ABIE51_RS16730 0.62 -0.6
3,639,153 + ABIE51_RS16730 0.62 -0.3
3,639,153 + ABIE51_RS16730 0.62 -0.1
3,639,154 + ABIE51_RS16730 0.62 -0.3
3,639,154 - ABIE51_RS16730 0.62 -1.0
3,639,154 - ABIE51_RS16730 0.62 -1.1
3,639,154 - ABIE51_RS16730 0.62 +3.2
3,639,154 - ABIE51_RS16730 0.62 -1.4
3,639,154 - ABIE51_RS16730 0.62 -0.1
3,639,192 + ABIE51_RS16730 0.65 +0.1
3,639,192 + ABIE51_RS16730 0.65 +0.1
3,639,193 - ABIE51_RS16730 0.65 -0.1
3,639,418 - ABIE51_RS16730 0.82 +1.2
3,639,513 + ABIE51_RS16730 0.90 +0.4
3,639,513 + ABIE51_RS16730 0.90 -1.1
3,639,513 + ABIE51_RS16730 0.90 -0.2
3,639,514 - ABIE51_RS16730 0.90 +1.0
3,639,514 - ABIE51_RS16730 0.90 +0.4
3,639,525 + +0.6
3,639,525 + -0.5
3,639,526 - +0.3
3,639,526 - -0.3
3,639,526 - +0.4
3,639,568 - +1.7
3,639,657 + +0.3
3,639,697 - -0.3
3,639,942 + ABIE51_RS16735 0.68 -0.5
3,639,942 + ABIE51_RS16735 0.68 -0.5
3,639,942 + ABIE51_RS16735 0.68 -0.4
3,639,942 + ABIE51_RS16735 0.68 -0.3
3,639,942 + ABIE51_RS16735 0.68 -0.9
3,639,942 + ABIE51_RS16735 0.68 +1.1
3,639,943 - ABIE51_RS16735 0.68 +0.1
3,639,943 - ABIE51_RS16735 0.68 -0.2
3,639,943 - ABIE51_RS16735 0.68 -2.6
3,640,895 + +0.2
3,640,895 + +0.4
3,640,895 + -0.4
3,640,895 + -0.7
3,640,895 + +0.1
3,640,895 + -0.4
3,640,895 + +0.0
3,640,896 - +0.9
3,640,896 - +0.0
3,640,896 - +0.4
3,641,025 - +0.0
3,641,025 - +2.6

Or see this region's nucleotide sequence