Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS14070

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS14060 and ABIE51_RS14065 are separated by 1 nucleotidesABIE51_RS14065 and ABIE51_RS14070 are separated by 22 nucleotidesABIE51_RS14070 and ABIE51_RS14075 overlap by 1 nucleotidesABIE51_RS14075 and ABIE51_RS14080 are separated by 259 nucleotidesABIE51_RS14080 and ABIE51_RS14085 are separated by 98 nucleotides ABIE51_RS14060: ABIE51_RS14060 - MBL fold metallo-hydrolase, at 3,043,623 to 3,044,381 _RS14060 ABIE51_RS14065: ABIE51_RS14065 - 3-deoxy-D-manno-octulosonic acid kinase, at 3,044,383 to 3,045,132 _RS14065 ABIE51_RS14070: ABIE51_RS14070 - glycosyltransferase family 9 protein, at 3,045,155 to 3,046,258 _RS14070 ABIE51_RS14075: ABIE51_RS14075 - hypothetical protein, at 3,046,258 to 3,046,608 _RS14075 ABIE51_RS14080: ABIE51_RS14080 - tRNA-Ser, at 3,046,868 to 3,046,958 _RS14080 ABIE51_RS14085: ABIE51_RS14085 - DUF6165 family protein, at 3,047,057 to 3,047,464 _RS14085 Position (kb) 3045 3046 3047Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3044.201 kb on + strand, within ABIE51_RS14060at 3044.201 kb on + strand, within ABIE51_RS14060at 3044.202 kb on - strand, within ABIE51_RS14060at 3044.239 kb on + strand, within ABIE51_RS14060at 3044.240 kb on - strand, within ABIE51_RS14060at 3044.248 kb on + strand, within ABIE51_RS14060at 3044.387 kb on + strandat 3044.411 kb on + strandat 3045.144 kb on + strandat 3045.144 kb on + strandat 3045.515 kb on + strand, within ABIE51_RS14070at 3046.058 kb on + strand, within ABIE51_RS14070at 3046.059 kb on - strand, within ABIE51_RS14070at 3046.074 kb on - strand, within ABIE51_RS14070at 3046.074 kb on - strand, within ABIE51_RS14070at 3046.088 kb on + strand, within ABIE51_RS14070at 3046.088 kb on + strand, within ABIE51_RS14070at 3046.089 kb on - strand, within ABIE51_RS14070at 3046.109 kb on + strand, within ABIE51_RS14070at 3046.109 kb on + strand, within ABIE51_RS14070at 3046.214 kb on + strandat 3046.215 kb on - strandat 3046.591 kb on + strandat 3046.732 kb on + strandat 3046.982 kb on - strandat 3047.024 kb on + strandat 3047.024 kb on + strandat 3047.025 kb on - strandat 3047.031 kb on + strandat 3047.031 kb on + strandat 3047.031 kb on + strandat 3047.031 kb on + strandat 3047.031 kb on + strandat 3047.031 kb on + strandat 3047.031 kb on + strandat 3047.031 kb on + strandat 3047.032 kb on - strandat 3047.032 kb on - strandat 3047.032 kb on - strandat 3047.032 kb on - strandat 3047.032 kb on - strandat 3047.032 kb on - strandat 3047.032 kb on - strandat 3047.032 kb on - strandat 3047.032 kb on - strandat 3047.032 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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3,044,201 + ABIE51_RS14060 0.76 -0.6
3,044,201 + ABIE51_RS14060 0.76 +1.2
3,044,202 - ABIE51_RS14060 0.76 +0.7
3,044,239 + ABIE51_RS14060 0.81 -0.1
3,044,240 - ABIE51_RS14060 0.81 -1.4
3,044,248 + ABIE51_RS14060 0.82 -1.1
3,044,387 + -0.4
3,044,411 + -0.1
3,045,144 + -0.3
3,045,144 + +0.1
3,045,515 + ABIE51_RS14070 0.33 -1.8
3,046,058 + ABIE51_RS14070 0.82 -1.5
3,046,059 - ABIE51_RS14070 0.82 -1.0
3,046,074 - ABIE51_RS14070 0.83 -2.0
3,046,074 - ABIE51_RS14070 0.83 -1.5
3,046,088 + ABIE51_RS14070 0.85 -0.9
3,046,088 + ABIE51_RS14070 0.85 -2.2
3,046,089 - ABIE51_RS14070 0.85 -3.9
3,046,109 + ABIE51_RS14070 0.86 -3.1
3,046,109 + ABIE51_RS14070 0.86 -1.4
3,046,214 + -0.8
3,046,215 - +0.2
3,046,591 + +0.1
3,046,732 + +1.1
3,046,982 - +0.2
3,047,024 + +0.1
3,047,024 + +0.3
3,047,025 - -1.3
3,047,031 + +0.4
3,047,031 + -0.9
3,047,031 + -0.5
3,047,031 + +0.3
3,047,031 + -0.0
3,047,031 + -0.3
3,047,031 + -0.6
3,047,031 + -0.4
3,047,032 - -0.3
3,047,032 - +0.6
3,047,032 - -0.0
3,047,032 - -0.8
3,047,032 - +0.0
3,047,032 - +0.9
3,047,032 - -1.0
3,047,032 - +1.7
3,047,032 - -0.1
3,047,032 - +0.1

Or see this region's nucleotide sequence