Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS05295

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS05280 and ABIE51_RS05285 are separated by 35 nucleotidesABIE51_RS05285 and ABIE51_RS05290 are separated by 21 nucleotidesABIE51_RS05290 and ABIE51_RS05295 are separated by 106 nucleotidesABIE51_RS05295 and ABIE51_RS05300 are separated by 9 nucleotides ABIE51_RS05280: ABIE51_RS05280 - nucleoside triphosphate pyrophosphohydrolase, at 1,147,414 to 1,148,277 _RS05280 ABIE51_RS05285: ABIE51_RS05285 - DUF962 domain-containing protein, at 1,148,313 to 1,148,615 _RS05285 ABIE51_RS05290: ABIE51_RS05290 - DMT family protein, at 1,148,637 to 1,148,978 _RS05290 ABIE51_RS05295: ABIE51_RS05295 - response regulator transcription factor, at 1,149,085 to 1,149,801 _RS05295 ABIE51_RS05300: ABIE51_RS05300 - HAMP domain-containing sensor histidine kinase, at 1,149,811 to 1,151,088 _RS05300 Position (kb) 1149 1150Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1148.343 kb on + strandat 1148.352 kb on + strand, within ABIE51_RS05285at 1148.352 kb on + strand, within ABIE51_RS05285at 1148.353 kb on - strand, within ABIE51_RS05285at 1148.353 kb on - strand, within ABIE51_RS05285at 1148.353 kb on - strand, within ABIE51_RS05285at 1148.553 kb on + strand, within ABIE51_RS05285at 1148.554 kb on - strand, within ABIE51_RS05285at 1148.554 kb on - strand, within ABIE51_RS05285at 1148.613 kb on + strandat 1148.613 kb on + strandat 1148.613 kb on + strandat 1148.614 kb on - strandat 1148.614 kb on - strandat 1148.614 kb on - strandat 1148.719 kb on + strand, within ABIE51_RS05290at 1148.719 kb on + strand, within ABIE51_RS05290at 1148.720 kb on - strand, within ABIE51_RS05290at 1148.720 kb on - strand, within ABIE51_RS05290at 1148.791 kb on + strand, within ABIE51_RS05290at 1148.833 kb on + strand, within ABIE51_RS05290at 1148.833 kb on + strand, within ABIE51_RS05290at 1148.834 kb on - strand, within ABIE51_RS05290at 1148.834 kb on - strand, within ABIE51_RS05290at 1148.834 kb on - strand, within ABIE51_RS05290at 1148.893 kb on + strand, within ABIE51_RS05290at 1148.893 kb on + strand, within ABIE51_RS05290at 1148.893 kb on + strand, within ABIE51_RS05290at 1148.893 kb on + strand, within ABIE51_RS05290at 1148.894 kb on - strand, within ABIE51_RS05290at 1148.894 kb on - strand, within ABIE51_RS05290at 1148.894 kb on - strand, within ABIE51_RS05290at 1148.894 kb on - strand, within ABIE51_RS05290at 1148.981 kb on + strandat 1148.981 kb on + strandat 1148.981 kb on + strandat 1148.982 kb on - strandat 1148.982 kb on - strandat 1148.982 kb on - strandat 1149.167 kb on - strand, within ABIE51_RS05295at 1149.244 kb on + strand, within ABIE51_RS05295at 1149.244 kb on + strand, within ABIE51_RS05295at 1149.244 kb on + strand, within ABIE51_RS05295at 1149.244 kb on + strand, within ABIE51_RS05295at 1149.244 kb on + strand, within ABIE51_RS05295at 1149.244 kb on + strand, within ABIE51_RS05295at 1149.245 kb on - strand, within ABIE51_RS05295at 1149.361 kb on - strand, within ABIE51_RS05295at 1149.406 kb on + strand, within ABIE51_RS05295at 1149.406 kb on + strand, within ABIE51_RS05295at 1149.407 kb on - strand, within ABIE51_RS05295at 1149.407 kb on - strand, within ABIE51_RS05295at 1149.407 kb on - strand, within ABIE51_RS05295at 1149.697 kb on + strand, within ABIE51_RS05295at 1149.697 kb on + strand, within ABIE51_RS05295at 1149.697 kb on + strand, within ABIE51_RS05295at 1149.697 kb on + strand, within ABIE51_RS05295at 1149.697 kb on + strand, within ABIE51_RS05295at 1149.697 kb on + strand, within ABIE51_RS05295at 1149.698 kb on - strand, within ABIE51_RS05295at 1149.698 kb on - strand, within ABIE51_RS05295at 1149.973 kb on + strand, within ABIE51_RS05300at 1149.973 kb on + strand, within ABIE51_RS05300at 1150.025 kb on - strand, within ABIE51_RS05300at 1150.025 kb on - strand, within ABIE51_RS05300at 1150.025 kb on - strand, within ABIE51_RS05300at 1150.025 kb on - strand, within ABIE51_RS05300at 1150.126 kb on + strand, within ABIE51_RS05300at 1150.126 kb on + strand, within ABIE51_RS05300at 1150.156 kb on + strand, within ABIE51_RS05300at 1150.156 kb on + strand, within ABIE51_RS05300at 1150.156 kb on + strand, within ABIE51_RS05300at 1150.156 kb on + strand, within ABIE51_RS05300at 1150.157 kb on - strand, within ABIE51_RS05300at 1150.157 kb on - strand, within ABIE51_RS05300at 1150.262 kb on - strand, within ABIE51_RS05300at 1150.262 kb on - strand, within ABIE51_RS05300

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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1,148,343 + +0.1
1,148,352 + ABIE51_RS05285 0.13 -0.6
1,148,352 + ABIE51_RS05285 0.13 -0.1
1,148,353 - ABIE51_RS05285 0.13 -0.1
1,148,353 - ABIE51_RS05285 0.13 -1.1
1,148,353 - ABIE51_RS05285 0.13 -0.3
1,148,553 + ABIE51_RS05285 0.79 +0.4
1,148,554 - ABIE51_RS05285 0.80 +0.1
1,148,554 - ABIE51_RS05285 0.80 -1.2
1,148,613 + +0.2
1,148,613 + -0.0
1,148,613 + +0.0
1,148,614 - -0.1
1,148,614 - -1.6
1,148,614 - +0.0
1,148,719 + ABIE51_RS05290 0.24 +0.1
1,148,719 + ABIE51_RS05290 0.24 -0.4
1,148,720 - ABIE51_RS05290 0.24 -0.1
1,148,720 - ABIE51_RS05290 0.24 +0.3
1,148,791 + ABIE51_RS05290 0.45 +3.5
1,148,833 + ABIE51_RS05290 0.57 -0.6
1,148,833 + ABIE51_RS05290 0.57 +0.3
1,148,834 - ABIE51_RS05290 0.58 +0.5
1,148,834 - ABIE51_RS05290 0.58 +1.1
1,148,834 - ABIE51_RS05290 0.58 +0.3
1,148,893 + ABIE51_RS05290 0.75 +0.3
1,148,893 + ABIE51_RS05290 0.75 -0.8
1,148,893 + ABIE51_RS05290 0.75 -1.2
1,148,893 + ABIE51_RS05290 0.75 +0.4
1,148,894 - ABIE51_RS05290 0.75 -0.5
1,148,894 - ABIE51_RS05290 0.75 +0.2
1,148,894 - ABIE51_RS05290 0.75 +0.4
1,148,894 - ABIE51_RS05290 0.75 +0.4
1,148,981 + -1.0
1,148,981 + +1.0
1,148,981 + +0.7
1,148,982 - +0.2
1,148,982 - -0.4
1,148,982 - +0.3
1,149,167 - ABIE51_RS05295 0.11 -1.0
1,149,244 + ABIE51_RS05295 0.22 +0.2
1,149,244 + ABIE51_RS05295 0.22 -1.3
1,149,244 + ABIE51_RS05295 0.22 -1.9
1,149,244 + ABIE51_RS05295 0.22 -0.0
1,149,244 + ABIE51_RS05295 0.22 +0.7
1,149,244 + ABIE51_RS05295 0.22 -0.2
1,149,245 - ABIE51_RS05295 0.22 -0.6
1,149,361 - ABIE51_RS05295 0.38 -0.8
1,149,406 + ABIE51_RS05295 0.45 -2.2
1,149,406 + ABIE51_RS05295 0.45 +0.6
1,149,407 - ABIE51_RS05295 0.45 -2.0
1,149,407 - ABIE51_RS05295 0.45 -0.6
1,149,407 - ABIE51_RS05295 0.45 +0.4
1,149,697 + ABIE51_RS05295 0.85 +0.5
1,149,697 + ABIE51_RS05295 0.85 -1.3
1,149,697 + ABIE51_RS05295 0.85 -2.5
1,149,697 + ABIE51_RS05295 0.85 -1.1
1,149,697 + ABIE51_RS05295 0.85 -1.5
1,149,697 + ABIE51_RS05295 0.85 +1.0
1,149,698 - ABIE51_RS05295 0.85 -0.9
1,149,698 - ABIE51_RS05295 0.85 -0.4
1,149,973 + ABIE51_RS05300 0.13 -1.0
1,149,973 + ABIE51_RS05300 0.13 -1.0
1,150,025 - ABIE51_RS05300 0.17 +0.2
1,150,025 - ABIE51_RS05300 0.17 -0.9
1,150,025 - ABIE51_RS05300 0.17 -1.0
1,150,025 - ABIE51_RS05300 0.17 +0.4
1,150,126 + ABIE51_RS05300 0.25 -0.9
1,150,126 + ABIE51_RS05300 0.25 -0.5
1,150,156 + ABIE51_RS05300 0.27 -0.3
1,150,156 + ABIE51_RS05300 0.27 -0.5
1,150,156 + ABIE51_RS05300 0.27 +0.5
1,150,156 + ABIE51_RS05300 0.27 -0.7
1,150,157 - ABIE51_RS05300 0.27 +1.0
1,150,157 - ABIE51_RS05300 0.27 +0.1
1,150,262 - ABIE51_RS05300 0.35 -0.6
1,150,262 - ABIE51_RS05300 0.35 -0.7

Or see this region's nucleotide sequence