Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04170 and ABIE51_RS04175 are separated by 244 nucleotides ABIE51_RS04175 and ABIE51_RS04180 are separated by 121 nucleotides ABIE51_RS04180 and ABIE51_RS04185 overlap by 1 nucleotides ABIE51_RS04185 and ABIE51_RS04190 overlap by 4 nucleotides
ABIE51_RS04170: ABIE51_RS04170 - HAMP domain-containing sensor histidine kinase, at 902,851 to 904,251
_RS04170
ABIE51_RS04175: ABIE51_RS04175 - aminodeoxychorismate/anthranilate synthase component II, at 904,496 to 905,086
_RS04175
ABIE51_RS04180: ABIE51_RS04180 - anthranilate phosphoribosyltransferase, at 905,208 to 906,254
_RS04180
ABIE51_RS04185: ABIE51_RS04185 - antibiotic biosynthesis monooxygenase, at 906,254 to 906,610
_RS04185
ABIE51_RS04190: ABIE51_RS04190 - indole-3-glycerol phosphate synthase TrpC, at 906,607 to 907,398
_RS04190
Position (kb) 905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 904.245 kb on - strand at 904.249 kb on + strand at 904.249 kb on + strand at 904.249 kb on + strand at 904.250 kb on - strand at 904.517 kb on + strand at 904.517 kb on + strand at 904.517 kb on + strand at 904.517 kb on + strand at 904.517 kb on + strand at 904.517 kb on + strand at 904.517 kb on + strand at 904.517 kb on + strand at 904.518 kb on - strand at 904.518 kb on - strand at 904.518 kb on - strand at 904.518 kb on - strand at 904.518 kb on - strand at 904.528 kb on + strand at 904.528 kb on + strand at 904.528 kb on + strand at 904.528 kb on + strand at 904.529 kb on - strand at 904.529 kb on - strand at 904.529 kb on - strand at 904.529 kb on - strand at 904.532 kb on + strand at 904.532 kb on + strand at 904.532 kb on + strand at 904.532 kb on + strand at 904.532 kb on + strand at 904.532 kb on + strand at 904.533 kb on - strand at 904.533 kb on - strand at 904.548 kb on - strand at 904.548 kb on - strand at 904.760 kb on + strand, within ABIE51_RS04175 at 904.859 kb on + strand, within ABIE51_RS04175 at 904.874 kb on + strand, within ABIE51_RS04175 at 905.144 kb on + strand at 905.144 kb on + strand at 905.144 kb on + strand at 905.144 kb on + strand at 905.144 kb on + strand at 905.144 kb on + strand at 905.145 kb on - strand at 905.217 kb on - strand at 905.217 kb on - strand at 905.830 kb on + strand, within ABIE51_RS04180 at 905.955 kb on + strand, within ABIE51_RS04180 at 905.955 kb on + strand, within ABIE51_RS04180 at 905.955 kb on + strand, within ABIE51_RS04180 at 906.114 kb on + strand, within ABIE51_RS04180 at 906.115 kb on - strand, within ABIE51_RS04180 at 906.115 kb on - strand, within ABIE51_RS04180 at 906.151 kb on + strand at 906.151 kb on + strand at 906.151 kb on + strand at 906.151 kb on + strand at 906.152 kb on - strand at 906.152 kb on - strand at 906.152 kb on - strand at 906.291 kb on - strand, within ABIE51_RS04185 at 906.293 kb on + strand, within ABIE51_RS04185 at 906.437 kb on - strand, within ABIE51_RS04185 at 906.446 kb on + strand, within ABIE51_RS04185 at 906.447 kb on - strand, within ABIE51_RS04185 at 906.531 kb on - strand, within ABIE51_RS04185 at 906.539 kb on + strand, within ABIE51_RS04185 at 906.539 kb on + strand, within ABIE51_RS04185 at 906.853 kb on + strand, within ABIE51_RS04190 at 906.853 kb on + strand, within ABIE51_RS04190 at 906.854 kb on - strand, within ABIE51_RS04190 at 906.922 kb on + strand, within ABIE51_RS04190 at 906.988 kb on + strand, within ABIE51_RS04190 at 906.997 kb on + strand, within ABIE51_RS04190
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 904,245 - -0.2 904,249 + -0.1 904,249 + +0.1 904,249 + -0.5 904,250 - -0.1 904,517 + +0.7 904,517 + -0.1 904,517 + +0.5 904,517 + +0.4 904,517 + +0.2 904,517 + +0.0 904,517 + -0.0 904,517 + -0.8 904,518 - +0.7 904,518 - -0.4 904,518 - +0.2 904,518 - -1.7 904,518 - +0.3 904,528 + -0.6 904,528 + -0.1 904,528 + -0.5 904,528 + -0.1 904,529 - -0.1 904,529 - -0.4 904,529 - -0.6 904,529 - -0.7 904,532 + +0.4 904,532 + +0.6 904,532 + -0.5 904,532 + +2.8 904,532 + -0.1 904,532 + -0.1 904,533 - -1.2 904,533 - +0.9 904,548 - -0.2 904,548 - +0.8 904,760 + ABIE51_RS04175 0.45 -0.1 904,859 + ABIE51_RS04175 0.61 -0.2 904,874 + ABIE51_RS04175 0.64 -0.3 905,144 + +0.2 905,144 + +0.2 905,144 + -0.2 905,144 + -0.9 905,144 + -2.9 905,144 + +0.3 905,145 - -0.1 905,217 - -1.0 905,217 - -0.4 905,830 + ABIE51_RS04180 0.59 +0.4 905,955 + ABIE51_RS04180 0.71 -2.7 905,955 + ABIE51_RS04180 0.71 -0.5 905,955 + ABIE51_RS04180 0.71 -1.8 906,114 + ABIE51_RS04180 0.87 +0.2 906,115 - ABIE51_RS04180 0.87 -0.5 906,115 - ABIE51_RS04180 0.87 -0.2 906,151 + -0.1 906,151 + -0.5 906,151 + -0.1 906,151 + +0.2 906,152 - +0.3 906,152 - -0.5 906,152 - -0.7 906,291 - ABIE51_RS04185 0.10 -0.2 906,293 + ABIE51_RS04185 0.11 -0.6 906,437 - ABIE51_RS04185 0.51 -0.1 906,446 + ABIE51_RS04185 0.54 +0.4 906,447 - ABIE51_RS04185 0.54 +0.9 906,531 - ABIE51_RS04185 0.78 +0.5 906,539 + ABIE51_RS04185 0.80 -0.2 906,539 + ABIE51_RS04185 0.80 +0.1 906,853 + ABIE51_RS04190 0.31 -1.2 906,853 + ABIE51_RS04190 0.31 -1.1 906,854 - ABIE51_RS04190 0.31 -0.7 906,922 + ABIE51_RS04190 0.40 -0.7 906,988 + ABIE51_RS04190 0.48 -0.1 906,997 + ABIE51_RS04190 0.49 +0.4
Or see this region's nucleotide sequence