Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02080 and ABIE51_RS02085 are separated by 139 nucleotides ABIE51_RS02085 and ABIE51_RS02090 overlap by 4 nucleotides ABIE51_RS02090 and ABIE51_RS02095 overlap by 4 nucleotides
ABIE51_RS02080: ABIE51_RS02080 - ATP-dependent RNA helicase RhlB, at 466,033 to 467,763
_RS02080
ABIE51_RS02085: ABIE51_RS02085 - cell division ATP-binding protein FtsE, at 467,903 to 468,589
_RS02085
ABIE51_RS02090: ABIE51_RS02090 - permease-like cell division protein FtsX, at 468,586 to 469,539
_RS02090
ABIE51_RS02095: ABIE51_RS02095 - response regulator, at 469,536 to 470,375
_RS02095
Position (kb) 467
468
469 Strain fitness (log2 ratio) -2
-1
0
1
2 at 467.020 kb on + strand, within ABIE51_RS02080 at 467.020 kb on + strand, within ABIE51_RS02080 at 467.026 kb on + strand, within ABIE51_RS02080 at 467.026 kb on + strand, within ABIE51_RS02080 at 467.026 kb on + strand, within ABIE51_RS02080 at 467.026 kb on + strand, within ABIE51_RS02080 at 467.026 kb on + strand, within ABIE51_RS02080 at 467.026 kb on + strand, within ABIE51_RS02080 at 467.026 kb on + strand, within ABIE51_RS02080 at 467.026 kb on + strand, within ABIE51_RS02080 at 467.026 kb on + strand, within ABIE51_RS02080 at 467.027 kb on - strand, within ABIE51_RS02080 at 467.027 kb on - strand, within ABIE51_RS02080 at 467.027 kb on - strand, within ABIE51_RS02080 at 467.027 kb on - strand, within ABIE51_RS02080 at 467.053 kb on + strand, within ABIE51_RS02080 at 467.053 kb on + strand, within ABIE51_RS02080 at 467.053 kb on + strand, within ABIE51_RS02080 at 467.053 kb on + strand, within ABIE51_RS02080 at 467.053 kb on + strand, within ABIE51_RS02080 at 467.054 kb on - strand, within ABIE51_RS02080 at 467.054 kb on - strand, within ABIE51_RS02080 at 467.054 kb on - strand, within ABIE51_RS02080 at 467.125 kb on + strand, within ABIE51_RS02080 at 467.125 kb on + strand, within ABIE51_RS02080 at 467.126 kb on - strand, within ABIE51_RS02080 at 467.155 kb on + strand, within ABIE51_RS02080 at 467.155 kb on + strand, within ABIE51_RS02080 at 467.155 kb on + strand, within ABIE51_RS02080 at 467.155 kb on + strand, within ABIE51_RS02080 at 467.155 kb on + strand, within ABIE51_RS02080 at 467.156 kb on - strand, within ABIE51_RS02080 at 467.156 kb on - strand, within ABIE51_RS02080 at 467.156 kb on - strand, within ABIE51_RS02080 at 467.156 kb on - strand, within ABIE51_RS02080 at 467.156 kb on - strand, within ABIE51_RS02080 at 467.498 kb on + strand, within ABIE51_RS02080 at 467.870 kb on + strand at 467.871 kb on - strand at 467.890 kb on + strand at 467.891 kb on - strand at 467.891 kb on - strand at 468.114 kb on + strand, within ABIE51_RS02085 at 468.114 kb on + strand, within ABIE51_RS02085 at 468.115 kb on - strand, within ABIE51_RS02085 at 468.115 kb on - strand, within ABIE51_RS02085 at 468.115 kb on - strand, within ABIE51_RS02085 at 468.400 kb on + strand, within ABIE51_RS02085 at 468.401 kb on - strand, within ABIE51_RS02085 at 468.401 kb on - strand, within ABIE51_RS02085 at 468.401 kb on - strand, within ABIE51_RS02085 at 468.401 kb on - strand, within ABIE51_RS02085 at 468.667 kb on + strand at 468.668 kb on - strand at 469.088 kb on + strand, within ABIE51_RS02090 at 469.088 kb on + strand, within ABIE51_RS02090 at 469.089 kb on - strand, within ABIE51_RS02090 at 469.089 kb on - strand, within ABIE51_RS02090 at 469.089 kb on - strand, within ABIE51_RS02090 at 469.089 kb on - strand, within ABIE51_RS02090 at 469.203 kb on + strand, within ABIE51_RS02090 at 469.203 kb on + strand, within ABIE51_RS02090 at 469.204 kb on - strand, within ABIE51_RS02090 at 469.204 kb on - strand, within ABIE51_RS02090 at 469.204 kb on - strand, within ABIE51_RS02090 at 469.298 kb on - strand, within ABIE51_RS02090 at 469.312 kb on + strand, within ABIE51_RS02090 at 469.312 kb on + strand, within ABIE51_RS02090 at 469.312 kb on + strand, within ABIE51_RS02090 at 469.312 kb on + strand, within ABIE51_RS02090 at 469.312 kb on + strand, within ABIE51_RS02090 at 469.313 kb on - strand, within ABIE51_RS02090 at 469.313 kb on - strand, within ABIE51_RS02090 at 469.313 kb on - strand, within ABIE51_RS02090 at 469.313 kb on - strand, within ABIE51_RS02090 at 469.313 kb on - strand, within ABIE51_RS02090 at 469.313 kb on - strand, within ABIE51_RS02090 at 469.313 kb on - strand, within ABIE51_RS02090 at 469.313 kb on - strand, within ABIE51_RS02090 at 469.313 kb on - strand, within ABIE51_RS02090 at 469.402 kb on + strand, within ABIE51_RS02090 at 469.402 kb on + strand, within ABIE51_RS02090 at 469.403 kb on - strand, within ABIE51_RS02090 at 469.403 kb on - strand, within ABIE51_RS02090 at 469.510 kb on + strand at 469.510 kb on + strand at 469.510 kb on + strand at 469.510 kb on + strand at 469.511 kb on - strand at 469.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 467,020 + ABIE51_RS02080 0.57 -0.2 467,020 + ABIE51_RS02080 0.57 -0.3 467,026 + ABIE51_RS02080 0.57 -0.7 467,026 + ABIE51_RS02080 0.57 +1.3 467,026 + ABIE51_RS02080 0.57 -0.1 467,026 + ABIE51_RS02080 0.57 +0.3 467,026 + ABIE51_RS02080 0.57 -0.6 467,026 + ABIE51_RS02080 0.57 +0.6 467,026 + ABIE51_RS02080 0.57 +0.4 467,026 + ABIE51_RS02080 0.57 -0.7 467,026 + ABIE51_RS02080 0.57 -0.6 467,027 - ABIE51_RS02080 0.57 -0.8 467,027 - ABIE51_RS02080 0.57 -1.1 467,027 - ABIE51_RS02080 0.57 -0.5 467,027 - ABIE51_RS02080 0.57 +1.4 467,053 + ABIE51_RS02080 0.59 +0.4 467,053 + ABIE51_RS02080 0.59 +0.5 467,053 + ABIE51_RS02080 0.59 -0.2 467,053 + ABIE51_RS02080 0.59 -0.6 467,053 + ABIE51_RS02080 0.59 +0.4 467,054 - ABIE51_RS02080 0.59 -0.4 467,054 - ABIE51_RS02080 0.59 -0.6 467,054 - ABIE51_RS02080 0.59 +2.0 467,125 + ABIE51_RS02080 0.63 -0.3 467,125 + ABIE51_RS02080 0.63 +1.0 467,126 - ABIE51_RS02080 0.63 -0.0 467,155 + ABIE51_RS02080 0.65 +1.0 467,155 + ABIE51_RS02080 0.65 +0.2 467,155 + ABIE51_RS02080 0.65 -1.2 467,155 + ABIE51_RS02080 0.65 +0.6 467,155 + ABIE51_RS02080 0.65 -0.6 467,156 - ABIE51_RS02080 0.65 -0.3 467,156 - ABIE51_RS02080 0.65 +0.4 467,156 - ABIE51_RS02080 0.65 -1.0 467,156 - ABIE51_RS02080 0.65 +0.2 467,156 - ABIE51_RS02080 0.65 +1.0 467,498 + ABIE51_RS02080 0.85 +0.0 467,870 + -0.3 467,871 - +0.4 467,890 + -0.1 467,891 - +0.5 467,891 - -0.1 468,114 + ABIE51_RS02085 0.31 -0.0 468,114 + ABIE51_RS02085 0.31 +0.0 468,115 - ABIE51_RS02085 0.31 -0.7 468,115 - ABIE51_RS02085 0.31 +0.1 468,115 - ABIE51_RS02085 0.31 +0.1 468,400 + ABIE51_RS02085 0.72 -0.4 468,401 - ABIE51_RS02085 0.72 -0.8 468,401 - ABIE51_RS02085 0.72 -0.6 468,401 - ABIE51_RS02085 0.72 -2.6 468,401 - ABIE51_RS02085 0.72 +0.2 468,667 + +0.4 468,668 - +0.1 469,088 + ABIE51_RS02090 0.53 +0.3 469,088 + ABIE51_RS02090 0.53 -1.6 469,089 - ABIE51_RS02090 0.53 +0.0 469,089 - ABIE51_RS02090 0.53 -1.8 469,089 - ABIE51_RS02090 0.53 -0.4 469,089 - ABIE51_RS02090 0.53 +1.1 469,203 + ABIE51_RS02090 0.65 -0.5 469,203 + ABIE51_RS02090 0.65 -0.0 469,204 - ABIE51_RS02090 0.65 -0.3 469,204 - ABIE51_RS02090 0.65 +2.4 469,204 - ABIE51_RS02090 0.65 -0.1 469,298 - ABIE51_RS02090 0.75 +0.6 469,312 + ABIE51_RS02090 0.76 +0.1 469,312 + ABIE51_RS02090 0.76 -0.2 469,312 + ABIE51_RS02090 0.76 -0.1 469,312 + ABIE51_RS02090 0.76 -0.8 469,312 + ABIE51_RS02090 0.76 +0.5 469,313 - ABIE51_RS02090 0.76 +0.3 469,313 - ABIE51_RS02090 0.76 -0.9 469,313 - ABIE51_RS02090 0.76 -0.6 469,313 - ABIE51_RS02090 0.76 +0.4 469,313 - ABIE51_RS02090 0.76 -0.1 469,313 - ABIE51_RS02090 0.76 -1.0 469,313 - ABIE51_RS02090 0.76 -1.0 469,313 - ABIE51_RS02090 0.76 +0.4 469,313 - ABIE51_RS02090 0.76 -0.2 469,402 + ABIE51_RS02090 0.86 -0.4 469,402 + ABIE51_RS02090 0.86 -0.4 469,403 - ABIE51_RS02090 0.86 -0.9 469,403 - ABIE51_RS02090 0.86 -0.2 469,510 + +0.4 469,510 + -0.1 469,510 + +0.7 469,510 + +0.8 469,511 - -1.7 469,511 - +0.8
Or see this region's nucleotide sequence