Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00985 and ABIE51_RS00990 are separated by 121 nucleotides ABIE51_RS00990 and ABIE51_RS00995 are separated by 479 nucleotides ABIE51_RS00995 and ABIE51_RS01000 are separated by 1 nucleotides
ABIE51_RS00985: ABIE51_RS00985 - DNA recombination protein RmuC, at 205,839 to 207,395
_RS00985
ABIE51_RS00990: ABIE51_RS00990 - VacJ family lipoprotein, at 207,517 to 208,311
_RS00990
ABIE51_RS00995: ABIE51_RS00995 - STAS domain-containing protein, at 208,791 to 209,066
_RS00995
ABIE51_RS01000: ABIE51_RS01000 - ABC transporter substrate-binding protein, at 209,068 to 209,742
_RS01000
Position (kb) 207
208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 206.651 kb on - strand, within ABIE51_RS00985 at 206.694 kb on + strand, within ABIE51_RS00985 at 206.694 kb on + strand, within ABIE51_RS00985 at 206.694 kb on + strand, within ABIE51_RS00985 at 206.694 kb on + strand, within ABIE51_RS00985 at 206.694 kb on + strand, within ABIE51_RS00985 at 206.694 kb on + strand, within ABIE51_RS00985 at 206.695 kb on - strand, within ABIE51_RS00985 at 206.695 kb on - strand, within ABIE51_RS00985 at 206.695 kb on - strand, within ABIE51_RS00985 at 206.695 kb on - strand, within ABIE51_RS00985 at 206.695 kb on - strand, within ABIE51_RS00985 at 206.916 kb on + strand, within ABIE51_RS00985 at 206.916 kb on + strand, within ABIE51_RS00985 at 206.917 kb on - strand, within ABIE51_RS00985 at 206.917 kb on - strand, within ABIE51_RS00985 at 206.917 kb on - strand, within ABIE51_RS00985 at 207.059 kb on + strand, within ABIE51_RS00985 at 207.059 kb on + strand, within ABIE51_RS00985 at 207.059 kb on + strand, within ABIE51_RS00985 at 207.059 kb on + strand, within ABIE51_RS00985 at 207.059 kb on + strand, within ABIE51_RS00985 at 207.059 kb on + strand, within ABIE51_RS00985 at 207.060 kb on - strand, within ABIE51_RS00985 at 207.060 kb on - strand, within ABIE51_RS00985 at 207.060 kb on - strand, within ABIE51_RS00985 at 207.221 kb on + strand, within ABIE51_RS00985 at 207.221 kb on + strand, within ABIE51_RS00985 at 207.222 kb on - strand, within ABIE51_RS00985 at 207.222 kb on - strand, within ABIE51_RS00985 at 207.367 kb on + strand at 207.368 kb on - strand at 207.368 kb on - strand at 207.368 kb on - strand at 207.587 kb on + strand at 207.587 kb on + strand at 207.587 kb on + strand at 207.587 kb on + strand at 207.588 kb on - strand at 207.588 kb on - strand at 207.588 kb on - strand at 207.588 kb on - strand at 207.588 kb on - strand at 207.641 kb on + strand, within ABIE51_RS00990 at 207.641 kb on + strand, within ABIE51_RS00990 at 207.680 kb on + strand, within ABIE51_RS00990 at 207.680 kb on + strand, within ABIE51_RS00990 at 207.680 kb on + strand, within ABIE51_RS00990 at 207.680 kb on + strand, within ABIE51_RS00990 at 207.680 kb on + strand, within ABIE51_RS00990 at 207.681 kb on - strand, within ABIE51_RS00990 at 207.681 kb on - strand, within ABIE51_RS00990 at 207.681 kb on - strand, within ABIE51_RS00990 at 207.681 kb on - strand, within ABIE51_RS00990 at 207.765 kb on + strand, within ABIE51_RS00990 at 207.766 kb on - strand, within ABIE51_RS00990 at 207.766 kb on - strand, within ABIE51_RS00990 at 207.766 kb on - strand, within ABIE51_RS00990 at 207.766 kb on - strand, within ABIE51_RS00990 at 207.766 kb on - strand, within ABIE51_RS00990 at 207.895 kb on + strand, within ABIE51_RS00990 at 207.895 kb on + strand, within ABIE51_RS00990 at 207.895 kb on + strand, within ABIE51_RS00990 at 207.896 kb on - strand, within ABIE51_RS00990 at 208.127 kb on + strand, within ABIE51_RS00990 at 208.127 kb on + strand, within ABIE51_RS00990 at 208.127 kb on + strand, within ABIE51_RS00990 at 208.128 kb on - strand, within ABIE51_RS00990 at 208.128 kb on - strand, within ABIE51_RS00990 at 208.196 kb on + strand, within ABIE51_RS00990 at 208.196 kb on + strand, within ABIE51_RS00990 at 208.196 kb on + strand, within ABIE51_RS00990 at 208.196 kb on + strand, within ABIE51_RS00990 at 208.197 kb on - strand, within ABIE51_RS00990 at 208.197 kb on - strand, within ABIE51_RS00990 at 208.214 kb on + strand, within ABIE51_RS00990 at 208.259 kb on + strand at 208.259 kb on + strand at 208.260 kb on - strand at 208.260 kb on - strand at 208.271 kb on + strand at 208.271 kb on + strand at 208.271 kb on + strand at 208.271 kb on + strand at 208.271 kb on + strand at 208.271 kb on + strand at 208.272 kb on - strand at 208.272 kb on - strand at 208.272 kb on - strand at 208.272 kb on - strand at 208.272 kb on - strand at 208.272 kb on - strand at 208.272 kb on - strand at 208.272 kb on - strand at 208.272 kb on - strand at 208.272 kb on - strand at 208.696 kb on + strand at 208.697 kb on - strand at 208.728 kb on + strand at 208.728 kb on + strand at 208.728 kb on + strand at 208.728 kb on + strand at 208.728 kb on + strand at 208.728 kb on + strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.729 kb on - strand at 208.825 kb on + strand, within ABIE51_RS00995 at 208.825 kb on + strand, within ABIE51_RS00995 at 208.826 kb on - strand, within ABIE51_RS00995 at 209.223 kb on + strand, within ABIE51_RS01000 at 209.223 kb on + strand, within ABIE51_RS01000 at 209.224 kb on - strand, within ABIE51_RS01000 at 209.224 kb on - strand, within ABIE51_RS01000 at 209.243 kb on + strand, within ABIE51_RS01000 at 209.243 kb on + strand, within ABIE51_RS01000 at 209.243 kb on + strand, within ABIE51_RS01000 at 209.243 kb on + strand, within ABIE51_RS01000 at 209.244 kb on - strand, within ABIE51_RS01000 at 209.244 kb on - strand, within ABIE51_RS01000 at 209.279 kb on + strand, within ABIE51_RS01000 at 209.279 kb on + strand, within ABIE51_RS01000 at 209.279 kb on + strand, within ABIE51_RS01000 at 209.279 kb on + strand, within ABIE51_RS01000 at 209.279 kb on + strand, within ABIE51_RS01000 at 209.280 kb on - strand, within ABIE51_RS01000 at 209.280 kb on - strand, within ABIE51_RS01000 at 209.280 kb on - strand, within ABIE51_RS01000 at 209.280 kb on - strand, within ABIE51_RS01000 at 209.280 kb on - strand, within ABIE51_RS01000
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 206,651 - ABIE51_RS00985 0.52 -0.1 206,694 + ABIE51_RS00985 0.55 -0.3 206,694 + ABIE51_RS00985 0.55 -0.0 206,694 + ABIE51_RS00985 0.55 -0.1 206,694 + ABIE51_RS00985 0.55 +0.0 206,694 + ABIE51_RS00985 0.55 +0.3 206,694 + ABIE51_RS00985 0.55 +0.0 206,695 - ABIE51_RS00985 0.55 -0.1 206,695 - ABIE51_RS00985 0.55 -0.1 206,695 - ABIE51_RS00985 0.55 -1.0 206,695 - ABIE51_RS00985 0.55 -0.2 206,695 - ABIE51_RS00985 0.55 -0.1 206,916 + ABIE51_RS00985 0.69 +0.1 206,916 + ABIE51_RS00985 0.69 +0.1 206,917 - ABIE51_RS00985 0.69 -0.3 206,917 - ABIE51_RS00985 0.69 -1.7 206,917 - ABIE51_RS00985 0.69 -1.6 207,059 + ABIE51_RS00985 0.78 -0.4 207,059 + ABIE51_RS00985 0.78 -0.7 207,059 + ABIE51_RS00985 0.78 -1.6 207,059 + ABIE51_RS00985 0.78 -0.1 207,059 + ABIE51_RS00985 0.78 -0.2 207,059 + ABIE51_RS00985 0.78 +0.3 207,060 - ABIE51_RS00985 0.78 +0.3 207,060 - ABIE51_RS00985 0.78 -0.0 207,060 - ABIE51_RS00985 0.78 +0.2 207,221 + ABIE51_RS00985 0.89 -0.7 207,221 + ABIE51_RS00985 0.89 -0.4 207,222 - ABIE51_RS00985 0.89 +0.1 207,222 - ABIE51_RS00985 0.89 -0.3 207,367 + +0.8 207,368 - +0.1 207,368 - +0.3 207,368 - +0.3 207,587 + +0.1 207,587 + -0.3 207,587 + -0.7 207,587 + -1.0 207,588 - -0.0 207,588 - -0.7 207,588 - -0.1 207,588 - -0.6 207,588 - +0.7 207,641 + ABIE51_RS00990 0.16 -1.3 207,641 + ABIE51_RS00990 0.16 -1.1 207,680 + ABIE51_RS00990 0.21 -0.6 207,680 + ABIE51_RS00990 0.21 -1.4 207,680 + ABIE51_RS00990 0.21 -1.0 207,680 + ABIE51_RS00990 0.21 -1.4 207,680 + ABIE51_RS00990 0.21 -0.7 207,681 - ABIE51_RS00990 0.21 -1.6 207,681 - ABIE51_RS00990 0.21 -0.9 207,681 - ABIE51_RS00990 0.21 -2.5 207,681 - ABIE51_RS00990 0.21 -1.4 207,765 + ABIE51_RS00990 0.31 -0.6 207,766 - ABIE51_RS00990 0.31 -0.7 207,766 - ABIE51_RS00990 0.31 -1.1 207,766 - ABIE51_RS00990 0.31 -1.0 207,766 - ABIE51_RS00990 0.31 -1.0 207,766 - ABIE51_RS00990 0.31 -1.2 207,895 + ABIE51_RS00990 0.48 -2.2 207,895 + ABIE51_RS00990 0.48 -1.6 207,895 + ABIE51_RS00990 0.48 -1.4 207,896 - ABIE51_RS00990 0.48 +1.0 208,127 + ABIE51_RS00990 0.77 -0.0 208,127 + ABIE51_RS00990 0.77 -0.5 208,127 + ABIE51_RS00990 0.77 -1.4 208,128 - ABIE51_RS00990 0.77 -0.6 208,128 - ABIE51_RS00990 0.77 -1.6 208,196 + ABIE51_RS00990 0.85 -1.4 208,196 + ABIE51_RS00990 0.85 -1.0 208,196 + ABIE51_RS00990 0.85 -0.9 208,196 + ABIE51_RS00990 0.85 +0.0 208,197 - ABIE51_RS00990 0.86 -0.8 208,197 - ABIE51_RS00990 0.86 +0.3 208,214 + ABIE51_RS00990 0.88 -2.2 208,259 + -0.3 208,259 + -0.1 208,260 - +1.0 208,260 - -0.4 208,271 + -0.6 208,271 + -1.0 208,271 + -0.3 208,271 + +0.4 208,271 + -1.6 208,271 + +0.1 208,272 - -0.5 208,272 - -0.8 208,272 - -1.3 208,272 - -0.9 208,272 - -1.6 208,272 - -0.6 208,272 - -1.2 208,272 - -1.4 208,272 - -0.3 208,272 - -0.6 208,696 + +0.2 208,697 - -1.0 208,728 + -0.3 208,728 + -0.3 208,728 + -0.2 208,728 + -0.8 208,728 + -0.7 208,728 + -0.3 208,729 - +0.3 208,729 - -0.9 208,729 - +1.0 208,729 - -0.4 208,729 - -0.7 208,729 - -1.4 208,729 - +0.2 208,729 - -0.4 208,729 - +0.9 208,729 - -0.0 208,729 - +0.6 208,729 - -0.2 208,729 - -0.4 208,825 + ABIE51_RS00995 0.12 -1.3 208,825 + ABIE51_RS00995 0.12 -0.3 208,826 - ABIE51_RS00995 0.13 -0.0 209,223 + ABIE51_RS01000 0.23 -0.5 209,223 + ABIE51_RS01000 0.23 +0.7 209,224 - ABIE51_RS01000 0.23 +0.0 209,224 - ABIE51_RS01000 0.23 -1.4 209,243 + ABIE51_RS01000 0.26 -1.2 209,243 + ABIE51_RS01000 0.26 -1.0 209,243 + ABIE51_RS01000 0.26 -1.3 209,243 + ABIE51_RS01000 0.26 -1.5 209,244 - ABIE51_RS01000 0.26 -0.4 209,244 - ABIE51_RS01000 0.26 -1.8 209,279 + ABIE51_RS01000 0.31 -0.9 209,279 + ABIE51_RS01000 0.31 -0.8 209,279 + ABIE51_RS01000 0.31 -3.6 209,279 + ABIE51_RS01000 0.31 -1.6 209,279 + ABIE51_RS01000 0.31 -1.2 209,280 - ABIE51_RS01000 0.31 -2.0 209,280 - ABIE51_RS01000 0.31 -0.9 209,280 - ABIE51_RS01000 0.31 +0.0 209,280 - ABIE51_RS01000 0.31 -1.1 209,280 - ABIE51_RS01000 0.31 -1.1
Or see this region's nucleotide sequence