Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00790 and ABIE51_RS00795 are separated by 49 nucleotides ABIE51_RS00795 and ABIE51_RS00800 are separated by 15 nucleotides ABIE51_RS00800 and ABIE51_RS00805 are separated by 170 nucleotides ABIE51_RS00805 and ABIE51_RS00810 are separated by 54 nucleotides
ABIE51_RS00790: ABIE51_RS00790 - MotA/TolQ/ExbB proton channel family protein, at 167,436 to 168,188
_RS00790
ABIE51_RS00795: ABIE51_RS00795 - biopolymer transporter ExbD, at 168,238 to 168,657
_RS00795
ABIE51_RS00800: ABIE51_RS00800 - biopolymer transporter ExbD, at 168,673 to 169,086
_RS00800
ABIE51_RS00805: ABIE51_RS00805 - biopolymer transporter ExbD, at 169,257 to 169,676
_RS00805
ABIE51_RS00810: ABIE51_RS00810 - pyridoxine 5'-phosphate synthase, at 169,731 to 170,501
_RS00810
Position (kb) 168
169
170 Strain fitness (log2 ratio) -1
0
1 at 168.186 kb on + strand at 168.199 kb on + strand at 168.199 kb on + strand at 168.199 kb on + strand at 168.199 kb on + strand at 168.199 kb on + strand at 168.199 kb on + strand at 168.199 kb on + strand at 168.199 kb on + strand at 168.200 kb on - strand at 168.200 kb on - strand at 168.200 kb on - strand at 168.236 kb on + strand at 168.236 kb on + strand at 168.236 kb on + strand at 168.671 kb on + strand at 168.672 kb on - strand at 168.790 kb on + strand, within ABIE51_RS00800 at 168.790 kb on + strand, within ABIE51_RS00800 at 168.791 kb on - strand, within ABIE51_RS00800 at 168.804 kb on + strand, within ABIE51_RS00800 at 169.057 kb on - strand at 169.095 kb on + strand at 169.095 kb on + strand at 169.095 kb on + strand at 169.095 kb on + strand at 169.095 kb on + strand at 169.095 kb on + strand at 169.096 kb on - strand at 169.096 kb on - strand at 169.096 kb on - strand at 169.096 kb on - strand at 169.096 kb on - strand at 169.096 kb on - strand at 169.177 kb on + strand at 169.177 kb on + strand at 169.177 kb on + strand at 169.177 kb on + strand at 169.177 kb on + strand at 169.178 kb on - strand at 169.178 kb on - strand at 169.178 kb on - strand at 169.178 kb on - strand at 169.178 kb on - strand at 169.178 kb on - strand at 169.178 kb on - strand at 169.178 kb on - strand at 169.178 kb on - strand at 169.178 kb on - strand at 169.219 kb on - strand at 169.571 kb on + strand, within ABIE51_RS00805 at 169.608 kb on + strand, within ABIE51_RS00805 at 169.608 kb on + strand, within ABIE51_RS00805 at 169.609 kb on - strand, within ABIE51_RS00805 at 169.609 kb on - strand, within ABIE51_RS00805 at 169.609 kb on - strand, within ABIE51_RS00805 at 169.609 kb on - strand, within ABIE51_RS00805 at 169.609 kb on - strand, within ABIE51_RS00805 at 169.674 kb on + strand at 169.674 kb on + strand at 169.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 168,186 + -0.3 168,199 + +0.1 168,199 + +0.6 168,199 + -0.4 168,199 + -0.3 168,199 + -0.2 168,199 + -0.2 168,199 + -1.2 168,199 + -0.3 168,200 - +0.3 168,200 - +0.7 168,200 - -0.6 168,236 + -0.1 168,236 + +0.8 168,236 + -0.2 168,671 + +0.2 168,672 - +1.0 168,790 + ABIE51_RS00800 0.28 -1.0 168,790 + ABIE51_RS00800 0.28 -1.3 168,791 - ABIE51_RS00800 0.29 +1.2 168,804 + ABIE51_RS00800 0.32 -1.3 169,057 - -0.7 169,095 + -0.3 169,095 + +0.4 169,095 + -0.5 169,095 + -0.4 169,095 + -0.3 169,095 + +0.3 169,096 - +0.7 169,096 - +0.1 169,096 - +1.1 169,096 - -0.4 169,096 - +0.6 169,096 - +0.2 169,177 + -0.2 169,177 + -0.2 169,177 + +0.0 169,177 + -0.6 169,177 + -0.1 169,178 - -0.4 169,178 - +0.1 169,178 - -0.4 169,178 - +0.4 169,178 - +0.8 169,178 - +0.1 169,178 - +0.0 169,178 - -0.5 169,178 - +0.4 169,178 - -1.3 169,219 - +0.0 169,571 + ABIE51_RS00805 0.75 -0.8 169,608 + ABIE51_RS00805 0.84 +0.3 169,608 + ABIE51_RS00805 0.84 +0.1 169,609 - ABIE51_RS00805 0.84 -0.3 169,609 - ABIE51_RS00805 0.84 -0.0 169,609 - ABIE51_RS00805 0.84 +0.2 169,609 - ABIE51_RS00805 0.84 -0.3 169,609 - ABIE51_RS00805 0.84 -0.2 169,674 + -0.5 169,674 + +0.1 169,675 - +0.0
Or see this region's nucleotide sequence