Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02495 and ABIE51_RS02500 are separated by 206 nucleotides ABIE51_RS02500 and ABIE51_RS02505 are separated by 1 nucleotides
ABIE51_RS02495: ABIE51_RS02495 - hypothetical protein, at 553,046 to 553,873
_RS02495
ABIE51_RS02500: ABIE51_RS02500 - lipocalin family protein, at 554,080 to 554,628
_RS02500
ABIE51_RS02505: ABIE51_RS02505 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 554,630 to 555,688
_RS02505
Position (kb) 554
555 Strain fitness (log2 ratio) -1
0
1
2 at 553.090 kb on - strand at 553.172 kb on + strand, within ABIE51_RS02495 at 553.221 kb on + strand, within ABIE51_RS02495 at 553.221 kb on + strand, within ABIE51_RS02495 at 553.498 kb on - strand, within ABIE51_RS02495 at 553.638 kb on + strand, within ABIE51_RS02495 at 553.638 kb on + strand, within ABIE51_RS02495 at 553.715 kb on + strand, within ABIE51_RS02495 at 553.716 kb on - strand, within ABIE51_RS02495 at 553.716 kb on - strand, within ABIE51_RS02495 at 553.716 kb on - strand, within ABIE51_RS02495 at 553.716 kb on - strand, within ABIE51_RS02495 at 553.801 kb on + strand at 553.859 kb on - strand at 553.977 kb on - strand at 554.065 kb on + strand at 554.065 kb on + strand at 554.071 kb on + strand at 554.265 kb on - strand, within ABIE51_RS02500 at 554.292 kb on - strand, within ABIE51_RS02500 at 554.426 kb on - strand, within ABIE51_RS02500 at 554.426 kb on - strand, within ABIE51_RS02500 at 554.468 kb on + strand, within ABIE51_RS02500 at 554.469 kb on - strand, within ABIE51_RS02500 at 554.469 kb on - strand, within ABIE51_RS02500 at 554.510 kb on + strand, within ABIE51_RS02500 at 554.757 kb on + strand, within ABIE51_RS02505 at 554.758 kb on - strand, within ABIE51_RS02505 at 554.835 kb on + strand, within ABIE51_RS02505 at 554.976 kb on + strand, within ABIE51_RS02505 at 554.976 kb on + strand, within ABIE51_RS02505 at 554.986 kb on + strand, within ABIE51_RS02505 at 555.064 kb on - strand, within ABIE51_RS02505 at 555.339 kb on + strand, within ABIE51_RS02505 at 555.340 kb on - strand, within ABIE51_RS02505 at 555.394 kb on - strand, within ABIE51_RS02505 at 555.396 kb on + strand, within ABIE51_RS02505 at 555.396 kb on + strand, within ABIE51_RS02505 at 555.397 kb on - strand, within ABIE51_RS02505 at 555.397 kb on - strand, within ABIE51_RS02505 at 555.397 kb on - strand, within ABIE51_RS02505 at 555.408 kb on + strand, within ABIE51_RS02505 at 555.408 kb on + strand, within ABIE51_RS02505 at 555.409 kb on - strand, within ABIE51_RS02505 at 555.459 kb on + strand, within ABIE51_RS02505 at 555.460 kb on - strand, within ABIE51_RS02505
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 553,090 - +0.8 553,172 + ABIE51_RS02495 0.15 +0.6 553,221 + ABIE51_RS02495 0.21 -0.1 553,221 + ABIE51_RS02495 0.21 -0.4 553,498 - ABIE51_RS02495 0.55 -0.3 553,638 + ABIE51_RS02495 0.71 +0.0 553,638 + ABIE51_RS02495 0.71 +0.7 553,715 + ABIE51_RS02495 0.81 +0.1 553,716 - ABIE51_RS02495 0.81 +0.7 553,716 - ABIE51_RS02495 0.81 +0.4 553,716 - ABIE51_RS02495 0.81 +0.2 553,716 - ABIE51_RS02495 0.81 +0.2 553,801 + +0.8 553,859 - -0.7 553,977 - +0.1 554,065 + -0.2 554,065 + +0.6 554,071 + -0.7 554,265 - ABIE51_RS02500 0.34 -1.2 554,292 - ABIE51_RS02500 0.39 -0.3 554,426 - ABIE51_RS02500 0.63 +1.9 554,426 - ABIE51_RS02500 0.63 +0.5 554,468 + ABIE51_RS02500 0.71 -0.4 554,469 - ABIE51_RS02500 0.71 -0.4 554,469 - ABIE51_RS02500 0.71 -0.2 554,510 + ABIE51_RS02500 0.78 +0.8 554,757 + ABIE51_RS02505 0.12 -0.1 554,758 - ABIE51_RS02505 0.12 -0.2 554,835 + ABIE51_RS02505 0.19 -0.3 554,976 + ABIE51_RS02505 0.33 -0.0 554,976 + ABIE51_RS02505 0.33 -0.6 554,986 + ABIE51_RS02505 0.34 +0.2 555,064 - ABIE51_RS02505 0.41 -1.5 555,339 + ABIE51_RS02505 0.67 +0.1 555,340 - ABIE51_RS02505 0.67 +0.4 555,394 - ABIE51_RS02505 0.72 -0.4 555,396 + ABIE51_RS02505 0.72 -0.0 555,396 + ABIE51_RS02505 0.72 +0.3 555,397 - ABIE51_RS02505 0.72 +0.3 555,397 - ABIE51_RS02505 0.72 -0.3 555,397 - ABIE51_RS02505 0.72 -0.6 555,408 + ABIE51_RS02505 0.73 -0.2 555,408 + ABIE51_RS02505 0.73 +1.1 555,409 - ABIE51_RS02505 0.74 +0.2 555,459 + ABIE51_RS02505 0.78 -0.3 555,460 - ABIE51_RS02505 0.78 -0.0
Or see this region's nucleotide sequence