Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00560 and ABIE51_RS00565 are separated by 131 nucleotides ABIE51_RS00565 and ABIE51_RS00570 are separated by 224 nucleotides
ABIE51_RS00560: ABIE51_RS00560 - DUF4344 domain-containing metallopeptidase, at 116,645 to 117,682
_RS00560
ABIE51_RS00565: ABIE51_RS00565 - DMT family transporter, at 117,814 to 118,782
_RS00565
ABIE51_RS00570: ABIE51_RS00570 - AraC family transcriptional regulator, at 119,007 to 119,831
_RS00570
Position (kb) 117
118
119 Strain fitness (log2 ratio) -2
-1
0
1
2 at 116.854 kb on - strand, within ABIE51_RS00560 at 116.874 kb on + strand, within ABIE51_RS00560 at 116.875 kb on - strand, within ABIE51_RS00560 at 116.875 kb on - strand, within ABIE51_RS00560 at 116.875 kb on - strand, within ABIE51_RS00560 at 116.875 kb on - strand, within ABIE51_RS00560 at 116.898 kb on + strand, within ABIE51_RS00560 at 116.899 kb on - strand, within ABIE51_RS00560 at 116.947 kb on - strand, within ABIE51_RS00560 at 116.947 kb on - strand, within ABIE51_RS00560 at 116.947 kb on - strand, within ABIE51_RS00560 at 117.165 kb on + strand, within ABIE51_RS00560 at 117.177 kb on + strand, within ABIE51_RS00560 at 117.177 kb on + strand, within ABIE51_RS00560 at 117.178 kb on - strand, within ABIE51_RS00560 at 117.178 kb on - strand, within ABIE51_RS00560 at 117.280 kb on - strand, within ABIE51_RS00560 at 117.315 kb on + strand, within ABIE51_RS00560 at 117.315 kb on + strand, within ABIE51_RS00560 at 117.315 kb on + strand, within ABIE51_RS00560 at 117.315 kb on + strand, within ABIE51_RS00560 at 117.315 kb on + strand, within ABIE51_RS00560 at 117.315 kb on + strand, within ABIE51_RS00560 at 117.315 kb on + strand, within ABIE51_RS00560 at 117.315 kb on + strand, within ABIE51_RS00560 at 117.316 kb on - strand, within ABIE51_RS00560 at 117.405 kb on + strand, within ABIE51_RS00560 at 117.405 kb on + strand, within ABIE51_RS00560 at 117.405 kb on + strand, within ABIE51_RS00560 at 117.405 kb on + strand, within ABIE51_RS00560 at 117.405 kb on + strand, within ABIE51_RS00560 at 117.405 kb on + strand, within ABIE51_RS00560 at 117.406 kb on - strand, within ABIE51_RS00560 at 117.406 kb on - strand, within ABIE51_RS00560 at 117.406 kb on - strand, within ABIE51_RS00560 at 117.406 kb on - strand, within ABIE51_RS00560 at 117.406 kb on - strand, within ABIE51_RS00560 at 117.409 kb on - strand, within ABIE51_RS00560 at 117.409 kb on - strand, within ABIE51_RS00560 at 117.441 kb on + strand, within ABIE51_RS00560 at 117.441 kb on + strand, within ABIE51_RS00560 at 117.441 kb on + strand, within ABIE51_RS00560 at 117.441 kb on + strand, within ABIE51_RS00560 at 117.442 kb on - strand, within ABIE51_RS00560 at 117.442 kb on - strand, within ABIE51_RS00560 at 117.615 kb on + strand at 117.616 kb on - strand at 117.659 kb on + strand at 117.659 kb on + strand at 117.659 kb on + strand at 117.659 kb on + strand at 117.659 kb on + strand at 117.659 kb on + strand at 117.660 kb on - strand at 117.660 kb on - strand at 117.660 kb on - strand at 117.701 kb on - strand at 117.805 kb on - strand at 117.805 kb on - strand at 117.805 kb on - strand at 117.944 kb on + strand, within ABIE51_RS00565 at 117.944 kb on + strand, within ABIE51_RS00565 at 118.155 kb on - strand, within ABIE51_RS00565 at 118.260 kb on - strand, within ABIE51_RS00565 at 118.311 kb on - strand, within ABIE51_RS00565 at 118.311 kb on - strand, within ABIE51_RS00565 at 118.547 kb on + strand, within ABIE51_RS00565 at 118.547 kb on + strand, within ABIE51_RS00565 at 118.547 kb on + strand, within ABIE51_RS00565 at 118.547 kb on + strand, within ABIE51_RS00565 at 118.547 kb on + strand, within ABIE51_RS00565 at 118.547 kb on + strand, within ABIE51_RS00565 at 118.547 kb on + strand, within ABIE51_RS00565 at 118.547 kb on + strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.548 kb on - strand, within ABIE51_RS00565 at 118.550 kb on + strand, within ABIE51_RS00565 at 118.551 kb on - strand, within ABIE51_RS00565 at 118.551 kb on - strand, within ABIE51_RS00565 at 118.670 kb on + strand, within ABIE51_RS00565 at 118.670 kb on + strand, within ABIE51_RS00565 at 118.671 kb on - strand, within ABIE51_RS00565 at 118.700 kb on + strand at 118.701 kb on - strand at 118.763 kb on + strand at 118.763 kb on + strand at 118.763 kb on + strand at 118.764 kb on - strand at 118.982 kb on + strand at 119.197 kb on + strand, within ABIE51_RS00570 at 119.197 kb on + strand, within ABIE51_RS00570 at 119.198 kb on - strand, within ABIE51_RS00570 at 119.198 kb on - strand, within ABIE51_RS00570 at 119.539 kb on - strand, within ABIE51_RS00570 at 119.540 kb on + strand, within ABIE51_RS00570 at 119.540 kb on + strand, within ABIE51_RS00570 at 119.541 kb on - strand, within ABIE51_RS00570 at 119.541 kb on - strand, within ABIE51_RS00570 at 119.542 kb on + strand, within ABIE51_RS00570 at 119.542 kb on + strand, within ABIE51_RS00570 at 119.542 kb on + strand, within ABIE51_RS00570 at 119.543 kb on - strand, within ABIE51_RS00570 at 119.543 kb on - strand, within ABIE51_RS00570 at 119.543 kb on - strand, within ABIE51_RS00570 at 119.543 kb on - strand, within ABIE51_RS00570 at 119.543 kb on - strand, within ABIE51_RS00570 at 119.589 kb on - strand, within ABIE51_RS00570 at 119.695 kb on + strand, within ABIE51_RS00570 at 119.735 kb on + strand, within ABIE51_RS00570 at 119.747 kb on - strand, within ABIE51_RS00570
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 116,854 - ABIE51_RS00560 0.20 +0.0 116,874 + ABIE51_RS00560 0.22 +0.1 116,875 - ABIE51_RS00560 0.22 +0.0 116,875 - ABIE51_RS00560 0.22 +0.1 116,875 - ABIE51_RS00560 0.22 -1.4 116,875 - ABIE51_RS00560 0.22 -0.1 116,898 + ABIE51_RS00560 0.24 -2.0 116,899 - ABIE51_RS00560 0.24 +0.2 116,947 - ABIE51_RS00560 0.29 +0.6 116,947 - ABIE51_RS00560 0.29 +0.5 116,947 - ABIE51_RS00560 0.29 +0.2 117,165 + ABIE51_RS00560 0.50 +0.1 117,177 + ABIE51_RS00560 0.51 -0.1 117,177 + ABIE51_RS00560 0.51 +0.1 117,178 - ABIE51_RS00560 0.51 +0.1 117,178 - ABIE51_RS00560 0.51 +0.0 117,280 - ABIE51_RS00560 0.61 +0.2 117,315 + ABIE51_RS00560 0.65 +0.2 117,315 + ABIE51_RS00560 0.65 -1.1 117,315 + ABIE51_RS00560 0.65 +0.2 117,315 + ABIE51_RS00560 0.65 +0.5 117,315 + ABIE51_RS00560 0.65 +1.0 117,315 + ABIE51_RS00560 0.65 -0.2 117,315 + ABIE51_RS00560 0.65 -0.2 117,315 + ABIE51_RS00560 0.65 -0.1 117,316 - ABIE51_RS00560 0.65 +1.9 117,405 + ABIE51_RS00560 0.73 +0.2 117,405 + ABIE51_RS00560 0.73 +1.6 117,405 + ABIE51_RS00560 0.73 +0.0 117,405 + ABIE51_RS00560 0.73 +0.0 117,405 + ABIE51_RS00560 0.73 +0.3 117,405 + ABIE51_RS00560 0.73 +0.0 117,406 - ABIE51_RS00560 0.73 +0.1 117,406 - ABIE51_RS00560 0.73 +0.6 117,406 - ABIE51_RS00560 0.73 +0.2 117,406 - ABIE51_RS00560 0.73 -0.0 117,406 - ABIE51_RS00560 0.73 -1.2 117,409 - ABIE51_RS00560 0.74 +0.0 117,409 - ABIE51_RS00560 0.74 +0.8 117,441 + ABIE51_RS00560 0.77 +0.3 117,441 + ABIE51_RS00560 0.77 +1.5 117,441 + ABIE51_RS00560 0.77 -0.1 117,441 + ABIE51_RS00560 0.77 +0.5 117,442 - ABIE51_RS00560 0.77 -0.6 117,442 - ABIE51_RS00560 0.77 +0.6 117,615 + -0.2 117,616 - -0.4 117,659 + -0.7 117,659 + -0.9 117,659 + +0.6 117,659 + -0.3 117,659 + +0.3 117,659 + +0.7 117,660 - +0.1 117,660 - -0.4 117,660 - -2.5 117,701 - -0.4 117,805 - -0.1 117,805 - +0.6 117,805 - +0.1 117,944 + ABIE51_RS00565 0.13 -0.4 117,944 + ABIE51_RS00565 0.13 -0.5 118,155 - ABIE51_RS00565 0.35 +0.9 118,260 - ABIE51_RS00565 0.46 +0.6 118,311 - ABIE51_RS00565 0.51 -0.3 118,311 - ABIE51_RS00565 0.51 +0.0 118,547 + ABIE51_RS00565 0.76 +0.1 118,547 + ABIE51_RS00565 0.76 +0.3 118,547 + ABIE51_RS00565 0.76 -0.2 118,547 + ABIE51_RS00565 0.76 -0.0 118,547 + ABIE51_RS00565 0.76 -0.3 118,547 + ABIE51_RS00565 0.76 -0.1 118,547 + ABIE51_RS00565 0.76 +0.0 118,547 + ABIE51_RS00565 0.76 -1.5 118,548 - ABIE51_RS00565 0.76 -0.8 118,548 - ABIE51_RS00565 0.76 +0.5 118,548 - ABIE51_RS00565 0.76 +0.4 118,548 - ABIE51_RS00565 0.76 -0.5 118,548 - ABIE51_RS00565 0.76 -0.1 118,548 - ABIE51_RS00565 0.76 -0.4 118,548 - ABIE51_RS00565 0.76 -0.4 118,548 - ABIE51_RS00565 0.76 -0.0 118,548 - ABIE51_RS00565 0.76 -0.1 118,548 - ABIE51_RS00565 0.76 +0.2 118,548 - ABIE51_RS00565 0.76 -0.1 118,548 - ABIE51_RS00565 0.76 -0.2 118,550 + ABIE51_RS00565 0.76 -0.5 118,551 - ABIE51_RS00565 0.76 -1.7 118,551 - ABIE51_RS00565 0.76 -0.1 118,670 + ABIE51_RS00565 0.88 -0.2 118,670 + ABIE51_RS00565 0.88 -0.3 118,671 - ABIE51_RS00565 0.88 +0.4 118,700 + +0.3 118,701 - -0.0 118,763 + -0.2 118,763 + -0.7 118,763 + +0.3 118,764 - +1.3 118,982 + -0.4 119,197 + ABIE51_RS00570 0.23 +0.3 119,197 + ABIE51_RS00570 0.23 +0.0 119,198 - ABIE51_RS00570 0.23 +0.4 119,198 - ABIE51_RS00570 0.23 -0.7 119,539 - ABIE51_RS00570 0.64 +1.1 119,540 + ABIE51_RS00570 0.65 +0.2 119,540 + ABIE51_RS00570 0.65 -0.2 119,541 - ABIE51_RS00570 0.65 -0.0 119,541 - ABIE51_RS00570 0.65 -1.3 119,542 + ABIE51_RS00570 0.65 +0.6 119,542 + ABIE51_RS00570 0.65 -0.0 119,542 + ABIE51_RS00570 0.65 -0.2 119,543 - ABIE51_RS00570 0.65 -0.6 119,543 - ABIE51_RS00570 0.65 +0.6 119,543 - ABIE51_RS00570 0.65 -0.1 119,543 - ABIE51_RS00570 0.65 -0.3 119,543 - ABIE51_RS00570 0.65 +0.6 119,589 - ABIE51_RS00570 0.71 +1.0 119,695 + ABIE51_RS00570 0.83 -0.6 119,735 + ABIE51_RS00570 0.88 +0.7 119,747 - ABIE51_RS00570 0.90 -0.7
Or see this region's nucleotide sequence