Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS14885

Experiment: Ying_OrganicAcid7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS14880 and ABIE51_RS14885 overlap by 32 nucleotidesABIE51_RS14885 and ABIE51_RS14890 are separated by 68 nucleotides ABIE51_RS14880: ABIE51_RS14880 - RNA polymerase sigma factor, at 3,230,210 to 3,231,538 _RS14880 ABIE51_RS14885: ABIE51_RS14885 - DUF1428 domain-containing protein, at 3,231,507 to 3,231,875 _RS14885 ABIE51_RS14890: ABIE51_RS14890 - YceI family protein, at 3,231,944 to 3,232,534 _RS14890 Position (kb) 3231 3232Strain fitness (log2 ratio) -1 0 1at 3230.798 kb on + strand, within ABIE51_RS14880at 3230.799 kb on - strand, within ABIE51_RS14880at 3230.799 kb on - strand, within ABIE51_RS14880at 3231.117 kb on - strand, within ABIE51_RS14880at 3231.335 kb on + strand, within ABIE51_RS14880at 3231.335 kb on + strand, within ABIE51_RS14880at 3231.335 kb on + strand, within ABIE51_RS14880at 3231.336 kb on - strand, within ABIE51_RS14880at 3231.336 kb on - strand, within ABIE51_RS14880at 3231.776 kb on - strand, within ABIE51_RS14885at 3231.849 kb on + strandat 3231.865 kb on + strandat 3231.865 kb on + strandat 3231.866 kb on - strandat 3232.209 kb on + strand, within ABIE51_RS14890at 3232.209 kb on + strand, within ABIE51_RS14890at 3232.210 kb on - strand, within ABIE51_RS14890at 3232.813 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1
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3,230,798 + ABIE51_RS14880 0.44 -0.4
3,230,799 - ABIE51_RS14880 0.44 -0.7
3,230,799 - ABIE51_RS14880 0.44 -0.2
3,231,117 - ABIE51_RS14880 0.68 +1.3
3,231,335 + ABIE51_RS14880 0.85 -0.2
3,231,335 + ABIE51_RS14880 0.85 +0.4
3,231,335 + ABIE51_RS14880 0.85 -0.6
3,231,336 - ABIE51_RS14880 0.85 -0.8
3,231,336 - ABIE51_RS14880 0.85 +0.0
3,231,776 - ABIE51_RS14885 0.73 -0.1
3,231,849 + +0.6
3,231,865 + -0.1
3,231,865 + -0.3
3,231,866 - +1.1
3,232,209 + ABIE51_RS14890 0.45 +0.1
3,232,209 + ABIE51_RS14890 0.45 +0.3
3,232,210 - ABIE51_RS14890 0.45 +0.6
3,232,813 - -1.5

Or see this region's nucleotide sequence