Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS12055

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
2,600,382	+				-0.3
2,600,382	+				-0.7
2,600,383	-				+0.2
2,600,383	-				-0.4
2,600,383	-				-0.6
2,600,383	-				+1.0
2,600,383	-				-0.8
2,600,391	+				-0.2
2,600,487	-				-0.1
2,600,487	-				-0.3
2,600,583	+				-2.2
2,600,600	+				-0.2
2,600,600	+				-0.5
2,600,600	+				+0.3
2,600,601	-				+0.4
2,600,601	-				-1.0
2,600,601	-				-0.0
2,600,601	-				-0.2
2,600,601	-				-0.4
2,600,601	-				+0.0
2,600,601	-				-0.1
2,600,601	-				+0.3
2,600,707	-		ABIE51_RS12050	0.50	-0.9
2,600,725	+		ABIE51_RS12050	0.59	-0.1
2,600,762	+		ABIE51_RS12050	0.77	-0.2
2,600,763	-		ABIE51_RS12050	0.78	+0.4
2,600,763	-		ABIE51_RS12050	0.78	-0.6
2,600,765	-		ABIE51_RS12050	0.79	-0.3
2,600,797	+				+1.5
2,600,797	+				-0.8
2,600,797	+				+0.4
2,600,798	-				-1.9
2,600,798	-				+0.3
2,600,798	-				-0.7
2,600,798	-				+1.2
2,600,798	-				+0.1
2,600,807	+				+0.3
2,600,808	-				+0.0
2,600,808	-				-0.5
2,600,808	-				+1.1
2,600,808	-				-0.3
2,600,808	-				+0.1
2,600,900	+				+1.3
2,600,900	+				-0.4
2,600,900	+				-0.5
2,600,927	-				-0.5
2,600,927	-				-0.1
2,600,933	+				+0.5
2,600,933	+				+0.4
2,600,933	+				+0.7
2,600,933	+				-0.9
2,600,933	+				+0.3
2,600,933	+				+0.4
2,600,933	+				-0.1
2,600,933	+				-0.6
2,600,933	+				-0.7
2,600,933	+				-1.1
2,600,933	+				-0.9
2,600,933	+				+0.2
2,600,934	-				+0.8
2,600,934	-				+0.1
2,600,934	-				-0.5
2,600,934	-				+0.1
2,600,934	-				-0.4
2,600,934	-				+0.4
2,600,934	-				-0.4
2,600,934	-				-0.1
2,600,934	-				-0.7
2,600,934	-				-0.5
2,600,934	-				-0.2
2,600,934	-				-0.3
2,600,934	-				+1.3
2,600,934	-				-0.0
2,600,934	-				+1.2
2,600,935	+				-0.4
2,600,935	+				+0.6
2,600,935	+				-0.3
2,600,935	+				-0.5
2,600,935	+				+0.5
2,600,935	+				+0.5
2,600,935	+				-0.5
2,600,935	+				+0.1
2,600,935	+				+0.2
2,600,935	+				-0.3
2,600,936	-				+0.3
2,600,936	-				-0.1
2,600,936	-				+0.2
2,600,936	-				-0.2
2,600,936	-				+0.9
2,600,936	-				-0.0
2,600,936	-				-0.2
2,600,936	-				-0.4
2,600,936	-				-0.6
2,600,936	-				+0.9
2,601,059	+				-0.1
2,601,059	+				+0.6
2,601,059	+				+0.1
2,601,060	-				+0.4
2,601,060	-				+0.5
2,601,060	-				+0.6
2,601,060	-				-0.0
2,601,060	-				-0.5
2,601,065	+				+1.1
2,601,065	+				-2.8
2,601,066	-				+0.2
2,601,066	-				-0.4
2,601,066	-				-0.7
2,601,066	-				-2.4
2,601,066	-				-0.2
2,601,090	-				-0.1
2,601,090	-				+0.7
2,601,141	+				-0.2
2,601,141	+				-0.5
2,601,141	+				+1.6
2,601,142	-				+1.5
2,601,142	-				+0.7
2,601,156	-				+0.1
2,601,156	-				-1.0
2,601,156	-				+0.9
2,601,156	-				-0.4
2,601,226	+				+0.5
2,601,303	+				-1.1
2,601,303	+				+0.6
2,601,303	+				-0.7
2,601,303	+				-1.4
2,601,304	-				-0.3
2,601,304	-				-0.7
2,601,304	-				+0.0
2,601,419	+		ABIE51_RS12055	0.12	-0.3
2,601,419	+		ABIE51_RS12055	0.12	+1.5
2,601,420	-		ABIE51_RS12055	0.12	+0.1
2,601,429	-		ABIE51_RS12055	0.13	-0.5
2,601,467	+		ABIE51_RS12055	0.18	-1.3
2,601,468	-		ABIE51_RS12055	0.18	+0.8
2,601,488	+		ABIE51_RS12055	0.20	-0.1
2,601,488	+		ABIE51_RS12055	0.20	-1.0
2,601,488	+		ABIE51_RS12055	0.20	-0.4
2,601,488	+		ABIE51_RS12055	0.20	+0.1
2,601,488	+		ABIE51_RS12055	0.20	-0.9
2,601,489	-		ABIE51_RS12055	0.21	-0.3
2,601,489	-		ABIE51_RS12055	0.21	+1.3
2,601,489	-		ABIE51_RS12055	0.21	+0.9
2,601,489	-		ABIE51_RS12055	0.21	-0.8
2,601,525	+		ABIE51_RS12055	0.25	-0.6
2,601,576	-		ABIE51_RS12055	0.31	-0.1
2,601,576	-		ABIE51_RS12055	0.31	-0.4
2,601,576	-		ABIE51_RS12055	0.31	-0.0
2,601,576	-		ABIE51_RS12055	0.31	+0.9
2,601,576	-		ABIE51_RS12055	0.31	+0.0
2,601,581	+		ABIE51_RS12055	0.32	-0.0
2,601,581	+		ABIE51_RS12055	0.32	+0.3
2,601,581	+		ABIE51_RS12055	0.32	+0.0
2,601,582	-		ABIE51_RS12055	0.32	-0.9
2,601,582	-		ABIE51_RS12055	0.32	+1.4
2,601,709	+		ABIE51_RS12055	0.48	+0.2
2,601,709	+		ABIE51_RS12055	0.48	+0.7
2,601,709	+		ABIE51_RS12055	0.48	+0.2
2,601,750	+		ABIE51_RS12055	0.53	+0.2
2,601,751	-		ABIE51_RS12055	0.53	-0.7
2,601,757	-		ABIE51_RS12055	0.54	+0.1
2,601,785	+		ABIE51_RS12055	0.57	-0.4
2,601,785	+		ABIE51_RS12055	0.57	-0.7
2,601,786	-		ABIE51_RS12055	0.57	-0.1
2,601,827	-		ABIE51_RS12055	0.62	+0.2
2,601,827	-		ABIE51_RS12055	0.62	-0.3
2,601,827	-		ABIE51_RS12055	0.62	+0.1
2,601,827	-		ABIE51_RS12055	0.62	-0.3
2,601,876	+		ABIE51_RS12055	0.68	-0.9
2,601,876	+		ABIE51_RS12055	0.68	-0.1
2,601,876	+		ABIE51_RS12055	0.68	+0.8
2,601,876	+		ABIE51_RS12055	0.68	+0.9
2,601,877	-		ABIE51_RS12055	0.68	+0.5
2,601,877	-		ABIE51_RS12055	0.68	-0.1
2,601,877	-		ABIE51_RS12055	0.68	-0.4
2,601,877	-		ABIE51_RS12055	0.68	+0.1
2,601,877	-		ABIE51_RS12055	0.68	-0.2
2,601,907	-		ABIE51_RS12055	0.72	-0.0
2,602,009	+		ABIE51_RS12055	0.85	-0.4
2,602,010	-		ABIE51_RS12055	0.85	+2.3
2,602,010	-		ABIE51_RS12055	0.85	+0.3
2,602,033	+		ABIE51_RS12055	0.87	+0.3
2,602,034	-		ABIE51_RS12055	0.88	-1.2
2,602,034	-		ABIE51_RS12055	0.88	+1.1
2,602,052	+		ABIE51_RS12055	0.90	+0.6
2,602,052	+		ABIE51_RS12055	0.90	+0.4
2,602,052	+		ABIE51_RS12055	0.90	+0.6
2,602,122	+				+0.0
2,602,123	-				+0.7
2,602,126	+				+0.8
2,602,126	+				-0.1
2,602,147	+				-1.8
2,602,147	+				-0.5
2,602,148	-				+0.2
2,602,322	-				+0.2
2,602,391	-				+0.3
2,602,391	-				+0.1
2,602,391	-				+0.1
2,602,410	-				+0.1
2,602,415	+				+0.1
2,602,415	+				-0.1
2,602,415	+				-0.1
2,602,416	-				+0.3
2,602,416	-				-1.6
2,602,416	-				+1.2
2,602,416	-				-1.3
2,602,436	+				+0.4
2,602,437	-				-2.8
2,602,510	+				+0.5
2,602,510	+				-0.7
2,602,511	-				+0.7
2,602,511	-				-0.6
2,602,524	+				+0.1
2,602,524	+				-0.0
2,602,524	+				+0.5
2,602,524	+				-0.5
2,602,524	+				+0.6
2,602,525	-				-0.4
2,602,525	-				+0.2
2,602,525	-				-1.1
2,602,525	-				-2.2
2,602,550	-				+0.0
2,602,626	+				+0.4
2,602,684	+				-1.0
2,602,685	-				+1.3
2,602,730	+				-1.4
2,602,730	+				-0.1
2,602,768	+				+0.2
2,602,768	+				+1.4
2,602,817	+				+0.0
2,602,818	-				-0.4
2,602,843	+				+0.8
2,602,843	+				-1.6
2,602,843	+				-0.2
2,602,844	-				-1.0
2,602,844	-				-0.0
2,602,847	+				-0.7
2,602,847	+				-0.7
2,602,848	-				-0.1
2,602,883	+				-0.0
2,602,905	+				+0.2
2,602,905	+				-0.1
2,602,905	+				+0.2
2,602,906	-				-0.4
2,602,919	+				-0.9
2,602,920	-				-0.0
2,602,923	+				-0.6
2,602,923	+				+0.8
2,602,923	+				+0.2
2,602,924	-				+1.6
2,602,996	-		ABIE51_RS12060	0.12	-0.4
2,602,996	-		ABIE51_RS12060	0.12	-0.4
2,603,030	+		ABIE51_RS12060	0.14	+0.2
2,603,034	+		ABIE51_RS12060	0.15	+0.5
2,603,034	+		ABIE51_RS12060	0.15	-0.1
2,603,034	+		ABIE51_RS12060	0.15	+0.3
2,603,034	+		ABIE51_RS12060	0.15	+0.3
2,603,034	+		ABIE51_RS12060	0.15	+1.0
2,603,035	-		ABIE51_RS12060	0.15	+0.1
2,603,035	-		ABIE51_RS12060	0.15	-0.7
2,603,035	-		ABIE51_RS12060	0.15	-0.2
2,603,035	-		ABIE51_RS12060	0.15	-1.5
2,603,039	+		ABIE51_RS12060	0.15	-0.1
2,603,076	+		ABIE51_RS12060	0.17	+1.4