Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS09705

Experiment: Ying_OrganicAcid7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS09700 and ABIE51_RS09705 are separated by 10 nucleotidesABIE51_RS09705 and ABIE51_RS09710 are separated by 7 nucleotides ABIE51_RS09700: ABIE51_RS09700 - calcium/proton exchanger, at 2,093,514 to 2,094,605 _RS09700 ABIE51_RS09705: ABIE51_RS09705 - efflux transporter outer membrane subunit, at 2,094,616 to 2,096,064 _RS09705 ABIE51_RS09710: ABIE51_RS09710 - HlyD family secretion protein, at 2,096,072 to 2,097,253 _RS09710 Position (kb) 2094 2095 2096 2097Strain fitness (log2 ratio) -1 0 1at 2094.106 kb on + strand, within ABIE51_RS09700at 2094.107 kb on - strand, within ABIE51_RS09700at 2094.107 kb on - strand, within ABIE51_RS09700at 2094.779 kb on - strand, within ABIE51_RS09705at 2095.373 kb on + strand, within ABIE51_RS09705at 2095.934 kb on + strandat 2096.123 kb on + strandat 2096.123 kb on + strandat 2096.163 kb on + strandat 2096.163 kb on + strandat 2096.884 kb on - strand, within ABIE51_RS09710

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1
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2,094,106 + ABIE51_RS09700 0.54 -0.5
2,094,107 - ABIE51_RS09700 0.54 +0.1
2,094,107 - ABIE51_RS09700 0.54 +0.4
2,094,779 - ABIE51_RS09705 0.11 -0.3
2,095,373 + ABIE51_RS09705 0.52 -0.8
2,095,934 + +0.6
2,096,123 + -0.7
2,096,123 + -1.3
2,096,163 + -0.2
2,096,163 + -0.2
2,096,884 - ABIE51_RS09710 0.69 +1.3

Or see this region's nucleotide sequence