Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS02280

Experiment: Ying_OrganicAcid7 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS02275 and ABIE51_RS02280 overlap by 4 nucleotidesABIE51_RS02280 and ABIE51_RS02285 are separated by 3 nucleotides ABIE51_RS02275: ABIE51_RS02275 - glycosyltransferase, at 511,132 to 512,169 _RS02275 ABIE51_RS02280: ABIE51_RS02280 - CDP-glycerol glycerophosphotransferase family protein, at 512,166 to 513,221 _RS02280 ABIE51_RS02285: ABIE51_RS02285 - CDP-glycerol glycerophosphotransferase family protein, at 513,225 to 514,280 _RS02285 Position (kb) 512 513 514Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 511.327 kb on + strand, within ABIE51_RS02275at 511.327 kb on + strand, within ABIE51_RS02275at 511.327 kb on + strand, within ABIE51_RS02275at 511.327 kb on + strand, within ABIE51_RS02275at 511.328 kb on - strand, within ABIE51_RS02275at 511.328 kb on - strand, within ABIE51_RS02275at 511.328 kb on - strand, within ABIE51_RS02275at 511.328 kb on - strand, within ABIE51_RS02275at 511.328 kb on - strand, within ABIE51_RS02275at 511.328 kb on - strand, within ABIE51_RS02275at 511.328 kb on - strand, within ABIE51_RS02275at 511.328 kb on - strand, within ABIE51_RS02275at 511.328 kb on - strand, within ABIE51_RS02275at 511.328 kb on - strand, within ABIE51_RS02275at 511.328 kb on - strand, within ABIE51_RS02275at 511.486 kb on + strand, within ABIE51_RS02275at 511.486 kb on + strand, within ABIE51_RS02275at 511.486 kb on + strand, within ABIE51_RS02275at 511.486 kb on + strand, within ABIE51_RS02275at 511.486 kb on + strand, within ABIE51_RS02275at 511.486 kb on + strand, within ABIE51_RS02275at 511.486 kb on + strand, within ABIE51_RS02275at 511.486 kb on + strand, within ABIE51_RS02275at 511.486 kb on + strand, within ABIE51_RS02275at 511.486 kb on + strand, within ABIE51_RS02275at 511.486 kb on + strand, within ABIE51_RS02275at 511.487 kb on - strand, within ABIE51_RS02275at 511.487 kb on - strand, within ABIE51_RS02275at 511.487 kb on - strand, within ABIE51_RS02275at 511.487 kb on - strand, within ABIE51_RS02275at 511.487 kb on - strand, within ABIE51_RS02275at 511.488 kb on + strand, within ABIE51_RS02275at 511.488 kb on + strand, within ABIE51_RS02275at 511.488 kb on + strand, within ABIE51_RS02275at 511.775 kb on - strand, within ABIE51_RS02275at 511.783 kb on + strand, within ABIE51_RS02275at 511.783 kb on + strand, within ABIE51_RS02275at 511.783 kb on + strand, within ABIE51_RS02275at 511.783 kb on + strand, within ABIE51_RS02275at 511.783 kb on + strand, within ABIE51_RS02275at 511.783 kb on + strand, within ABIE51_RS02275at 511.784 kb on - strand, within ABIE51_RS02275at 511.784 kb on - strand, within ABIE51_RS02275at 511.784 kb on - strand, within ABIE51_RS02275at 512.117 kb on + strandat 512.178 kb on + strandat 512.178 kb on + strandat 512.179 kb on - strandat 512.179 kb on - strandat 512.203 kb on - strandat 512.203 kb on - strandat 512.203 kb on - strandat 512.315 kb on + strand, within ABIE51_RS02280at 512.315 kb on + strand, within ABIE51_RS02280at 512.316 kb on - strand, within ABIE51_RS02280at 512.316 kb on - strand, within ABIE51_RS02280at 512.316 kb on - strand, within ABIE51_RS02280at 512.487 kb on + strand, within ABIE51_RS02280at 512.487 kb on + strand, within ABIE51_RS02280at 512.488 kb on - strand, within ABIE51_RS02280at 512.488 kb on - strand, within ABIE51_RS02280at 512.488 kb on - strand, within ABIE51_RS02280at 512.742 kb on + strand, within ABIE51_RS02280at 512.869 kb on + strand, within ABIE51_RS02280at 512.869 kb on + strand, within ABIE51_RS02280at 512.870 kb on - strand, within ABIE51_RS02280at 512.870 kb on - strand, within ABIE51_RS02280at 512.870 kb on - strand, within ABIE51_RS02280at 512.870 kb on - strand, within ABIE51_RS02280at 513.051 kb on + strand, within ABIE51_RS02280at 513.052 kb on - strand, within ABIE51_RS02280at 513.052 kb on - strand, within ABIE51_RS02280at 513.073 kb on - strand, within ABIE51_RS02280at 513.204 kb on + strandat 513.437 kb on + strand, within ABIE51_RS02285at 513.466 kb on + strand, within ABIE51_RS02285at 513.466 kb on + strand, within ABIE51_RS02285at 513.466 kb on + strand, within ABIE51_RS02285at 513.466 kb on + strand, within ABIE51_RS02285at 513.466 kb on + strand, within ABIE51_RS02285at 513.466 kb on + strand, within ABIE51_RS02285at 513.467 kb on - strand, within ABIE51_RS02285at 513.467 kb on - strand, within ABIE51_RS02285at 513.467 kb on - strand, within ABIE51_RS02285at 513.467 kb on - strand, within ABIE51_RS02285at 513.546 kb on + strand, within ABIE51_RS02285at 513.546 kb on + strand, within ABIE51_RS02285at 513.546 kb on + strand, within ABIE51_RS02285at 513.546 kb on + strand, within ABIE51_RS02285at 513.547 kb on - strand, within ABIE51_RS02285at 513.547 kb on - strand, within ABIE51_RS02285at 513.547 kb on - strand, within ABIE51_RS02285at 513.547 kb on - strand, within ABIE51_RS02285at 513.801 kb on + strand, within ABIE51_RS02285at 513.801 kb on + strand, within ABIE51_RS02285at 513.882 kb on + strand, within ABIE51_RS02285at 513.883 kb on - strand, within ABIE51_RS02285at 513.883 kb on - strand, within ABIE51_RS02285at 513.883 kb on - strand, within ABIE51_RS02285at 514.110 kb on + strand, within ABIE51_RS02285at 514.111 kb on - strand, within ABIE51_RS02285at 514.195 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1
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511,327 + ABIE51_RS02275 0.19 -0.1
511,327 + ABIE51_RS02275 0.19 +0.0
511,327 + ABIE51_RS02275 0.19 -1.5
511,327 + ABIE51_RS02275 0.19 -0.2
511,328 - ABIE51_RS02275 0.19 +0.4
511,328 - ABIE51_RS02275 0.19 +1.0
511,328 - ABIE51_RS02275 0.19 -0.3
511,328 - ABIE51_RS02275 0.19 -0.2
511,328 - ABIE51_RS02275 0.19 -0.3
511,328 - ABIE51_RS02275 0.19 +0.5
511,328 - ABIE51_RS02275 0.19 -0.3
511,328 - ABIE51_RS02275 0.19 +0.6
511,328 - ABIE51_RS02275 0.19 -1.0
511,328 - ABIE51_RS02275 0.19 +0.6
511,328 - ABIE51_RS02275 0.19 +0.1
511,486 + ABIE51_RS02275 0.34 +0.4
511,486 + ABIE51_RS02275 0.34 +0.0
511,486 + ABIE51_RS02275 0.34 +0.3
511,486 + ABIE51_RS02275 0.34 -0.0
511,486 + ABIE51_RS02275 0.34 -0.8
511,486 + ABIE51_RS02275 0.34 +0.3
511,486 + ABIE51_RS02275 0.34 -0.0
511,486 + ABIE51_RS02275 0.34 -0.4
511,486 + ABIE51_RS02275 0.34 +0.4
511,486 + ABIE51_RS02275 0.34 -0.3
511,486 + ABIE51_RS02275 0.34 -0.0
511,487 - ABIE51_RS02275 0.34 -0.2
511,487 - ABIE51_RS02275 0.34 +0.6
511,487 - ABIE51_RS02275 0.34 +0.7
511,487 - ABIE51_RS02275 0.34 -0.2
511,487 - ABIE51_RS02275 0.34 +0.1
511,488 + ABIE51_RS02275 0.34 +0.1
511,488 + ABIE51_RS02275 0.34 +1.1
511,488 + ABIE51_RS02275 0.34 +0.3
511,775 - ABIE51_RS02275 0.62 -0.2
511,783 + ABIE51_RS02275 0.63 +0.8
511,783 + ABIE51_RS02275 0.63 +1.5
511,783 + ABIE51_RS02275 0.63 +0.1
511,783 + ABIE51_RS02275 0.63 +0.8
511,783 + ABIE51_RS02275 0.63 +0.2
511,783 + ABIE51_RS02275 0.63 -0.9
511,784 - ABIE51_RS02275 0.63 -0.0
511,784 - ABIE51_RS02275 0.63 +0.4
511,784 - ABIE51_RS02275 0.63 +0.8
512,117 + -0.1
512,178 + -0.2
512,178 + +0.2
512,179 - -1.7
512,179 - +0.5
512,203 - -1.9
512,203 - -2.5
512,203 - -3.6
512,315 + ABIE51_RS02280 0.14 -2.7
512,315 + ABIE51_RS02280 0.14 -4.1
512,316 - ABIE51_RS02280 0.14 +0.2
512,316 - ABIE51_RS02280 0.14 -2.5
512,316 - ABIE51_RS02280 0.14 -2.5
512,487 + ABIE51_RS02280 0.30 -1.5
512,487 + ABIE51_RS02280 0.30 -0.9
512,488 - ABIE51_RS02280 0.30 -2.7
512,488 - ABIE51_RS02280 0.30 -1.7
512,488 - ABIE51_RS02280 0.30 -0.9
512,742 + ABIE51_RS02280 0.55 -1.1
512,869 + ABIE51_RS02280 0.67 -1.3
512,869 + ABIE51_RS02280 0.67 -2.8
512,870 - ABIE51_RS02280 0.67 -1.9
512,870 - ABIE51_RS02280 0.67 -1.2
512,870 - ABIE51_RS02280 0.67 -1.5
512,870 - ABIE51_RS02280 0.67 -0.4
513,051 + ABIE51_RS02280 0.84 -2.3
513,052 - ABIE51_RS02280 0.84 -1.7
513,052 - ABIE51_RS02280 0.84 -0.4
513,073 - ABIE51_RS02280 0.86 -1.4
513,204 + -0.1
513,437 + ABIE51_RS02285 0.20 -0.1
513,466 + ABIE51_RS02285 0.23 +0.2
513,466 + ABIE51_RS02285 0.23 -1.0
513,466 + ABIE51_RS02285 0.23 -0.1
513,466 + ABIE51_RS02285 0.23 -0.0
513,466 + ABIE51_RS02285 0.23 +0.6
513,466 + ABIE51_RS02285 0.23 -0.1
513,467 - ABIE51_RS02285 0.23 -0.1
513,467 - ABIE51_RS02285 0.23 -0.4
513,467 - ABIE51_RS02285 0.23 +0.0
513,467 - ABIE51_RS02285 0.23 +0.0
513,546 + ABIE51_RS02285 0.30 +0.7
513,546 + ABIE51_RS02285 0.30 -0.3
513,546 + ABIE51_RS02285 0.30 +0.1
513,546 + ABIE51_RS02285 0.30 +0.4
513,547 - ABIE51_RS02285 0.30 -0.5
513,547 - ABIE51_RS02285 0.30 +1.0
513,547 - ABIE51_RS02285 0.30 -0.5
513,547 - ABIE51_RS02285 0.30 -0.1
513,801 + ABIE51_RS02285 0.55 +0.2
513,801 + ABIE51_RS02285 0.55 -0.6
513,882 + ABIE51_RS02285 0.62 +0.1
513,883 - ABIE51_RS02285 0.62 -0.5
513,883 - ABIE51_RS02285 0.62 -0.2
513,883 - ABIE51_RS02285 0.62 +1.3
514,110 + ABIE51_RS02285 0.84 +1.4
514,111 - ABIE51_RS02285 0.84 -0.4
514,195 + -0.5

Or see this region's nucleotide sequence