Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01840 and ABIE51_RS01845 are separated by 130 nucleotides ABIE51_RS01845 and ABIE51_RS01850 overlap by 8 nucleotides
ABIE51_RS01840: ABIE51_RS01840 - sulfate/molybdate ABC transporter ATP-binding protein, at 408,431 to 409,480
_RS01840
ABIE51_RS01845: ABIE51_RS01845 - sulfate ABC transporter permease subunit CysW, at 409,611 to 410,468
_RS01845
ABIE51_RS01850: ABIE51_RS01850 - sulfate ABC transporter permease subunit CysT, at 410,461 to 411,330
_RS01850
Position (kb) 409
410
411 Strain fitness (log2 ratio) -2
-1
0
1 at 408.660 kb on + strand, within ABIE51_RS01840 at 408.786 kb on + strand, within ABIE51_RS01840 at 408.787 kb on - strand, within ABIE51_RS01840 at 408.787 kb on - strand, within ABIE51_RS01840 at 408.807 kb on + strand, within ABIE51_RS01840 at 408.807 kb on + strand, within ABIE51_RS01840 at 408.808 kb on - strand, within ABIE51_RS01840 at 408.808 kb on - strand, within ABIE51_RS01840 at 408.808 kb on - strand, within ABIE51_RS01840 at 409.084 kb on - strand, within ABIE51_RS01840 at 409.233 kb on + strand, within ABIE51_RS01840 at 409.234 kb on - strand, within ABIE51_RS01840 at 409.446 kb on + strand at 409.446 kb on + strand at 409.747 kb on + strand, within ABIE51_RS01845 at 409.748 kb on - strand, within ABIE51_RS01845 at 410.370 kb on + strand, within ABIE51_RS01845 at 410.370 kb on + strand, within ABIE51_RS01845 at 410.371 kb on - strand, within ABIE51_RS01845 at 410.636 kb on + strand, within ABIE51_RS01850 at 410.637 kb on - strand, within ABIE51_RS01850 at 410.672 kb on + strand, within ABIE51_RS01850 at 410.673 kb on - strand, within ABIE51_RS01850 at 410.894 kb on + strand, within ABIE51_RS01850 at 410.894 kb on + strand, within ABIE51_RS01850 at 410.894 kb on + strand, within ABIE51_RS01850 at 410.894 kb on + strand, within ABIE51_RS01850 at 410.894 kb on + strand, within ABIE51_RS01850 at 410.895 kb on - strand, within ABIE51_RS01850 at 410.895 kb on - strand, within ABIE51_RS01850 at 410.926 kb on - strand, within ABIE51_RS01850 at 410.951 kb on + strand, within ABIE51_RS01850 at 410.952 kb on - strand, within ABIE51_RS01850 at 410.952 kb on - strand, within ABIE51_RS01850 at 411.339 kb on - strand at 411.345 kb on + strand at 411.345 kb on + strand at 411.345 kb on + strand at 411.345 kb on + strand at 411.345 kb on + strand at 411.346 kb on - strand at 411.367 kb on + strand at 411.367 kb on + strand at 411.368 kb on - strand at 411.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 408,660 + ABIE51_RS01840 0.22 -1.2 408,786 + ABIE51_RS01840 0.34 -0.7 408,787 - ABIE51_RS01840 0.34 -1.5 408,787 - ABIE51_RS01840 0.34 -2.0 408,807 + ABIE51_RS01840 0.36 -1.2 408,807 + ABIE51_RS01840 0.36 -1.7 408,808 - ABIE51_RS01840 0.36 -1.8 408,808 - ABIE51_RS01840 0.36 -0.5 408,808 - ABIE51_RS01840 0.36 -1.5 409,084 - ABIE51_RS01840 0.62 -2.0 409,233 + ABIE51_RS01840 0.76 -1.8 409,234 - ABIE51_RS01840 0.76 -1.3 409,446 + +0.3 409,446 + -2.3 409,747 + ABIE51_RS01845 0.16 -1.9 409,748 - ABIE51_RS01845 0.16 -1.5 410,370 + ABIE51_RS01845 0.88 -0.2 410,370 + ABIE51_RS01845 0.88 -1.2 410,371 - ABIE51_RS01845 0.89 -1.4 410,636 + ABIE51_RS01850 0.20 -0.6 410,637 - ABIE51_RS01850 0.20 -1.2 410,672 + ABIE51_RS01850 0.24 -1.5 410,673 - ABIE51_RS01850 0.24 -2.0 410,894 + ABIE51_RS01850 0.50 -0.3 410,894 + ABIE51_RS01850 0.50 -0.5 410,894 + ABIE51_RS01850 0.50 -1.3 410,894 + ABIE51_RS01850 0.50 +0.2 410,894 + ABIE51_RS01850 0.50 -1.2 410,895 - ABIE51_RS01850 0.50 -2.1 410,895 - ABIE51_RS01850 0.50 -1.2 410,926 - ABIE51_RS01850 0.53 -0.4 410,951 + ABIE51_RS01850 0.56 -1.3 410,952 - ABIE51_RS01850 0.56 -1.2 410,952 - ABIE51_RS01850 0.56 +0.5 411,339 - +0.3 411,345 + -0.2 411,345 + +0.0 411,345 + -0.7 411,345 + +0.3 411,345 + -0.7 411,346 - +0.6 411,367 + +0.2 411,367 + +0.1 411,368 - +0.4 411,368 - +0.4
Or see this region's nucleotide sequence