Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01835 and ABIE51_RS01840 are separated by 64 nucleotides ABIE51_RS01840 and ABIE51_RS01845 are separated by 130 nucleotides ABIE51_RS01845 and ABIE51_RS01850 overlap by 8 nucleotides
ABIE51_RS01835: ABIE51_RS01835 - porphobilinogen synthase, at 407,374 to 408,366
_RS01835
ABIE51_RS01840: ABIE51_RS01840 - sulfate/molybdate ABC transporter ATP-binding protein, at 408,431 to 409,480
_RS01840
ABIE51_RS01845: ABIE51_RS01845 - sulfate ABC transporter permease subunit CysW, at 409,611 to 410,468
_RS01845
ABIE51_RS01850: ABIE51_RS01850 - sulfate ABC transporter permease subunit CysT, at 410,461 to 411,330
_RS01850
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1 at 408.357 kb on - strand at 408.379 kb on + strand at 408.379 kb on + strand at 408.380 kb on - strand at 408.660 kb on + strand, within ABIE51_RS01840 at 408.786 kb on + strand, within ABIE51_RS01840 at 408.787 kb on - strand, within ABIE51_RS01840 at 408.787 kb on - strand, within ABIE51_RS01840 at 408.807 kb on + strand, within ABIE51_RS01840 at 408.807 kb on + strand, within ABIE51_RS01840 at 408.808 kb on - strand, within ABIE51_RS01840 at 408.808 kb on - strand, within ABIE51_RS01840 at 408.808 kb on - strand, within ABIE51_RS01840 at 409.084 kb on - strand, within ABIE51_RS01840 at 409.233 kb on + strand, within ABIE51_RS01840 at 409.234 kb on - strand, within ABIE51_RS01840 at 409.446 kb on + strand at 409.446 kb on + strand at 409.747 kb on + strand, within ABIE51_RS01845 at 409.748 kb on - strand, within ABIE51_RS01845 at 410.370 kb on + strand, within ABIE51_RS01845 at 410.370 kb on + strand, within ABIE51_RS01845 at 410.371 kb on - strand, within ABIE51_RS01845
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 408,357 - +0.2 408,379 + -0.3 408,379 + -0.2 408,380 - +0.2 408,660 + ABIE51_RS01840 0.22 -1.2 408,786 + ABIE51_RS01840 0.34 -0.7 408,787 - ABIE51_RS01840 0.34 -1.5 408,787 - ABIE51_RS01840 0.34 -2.0 408,807 + ABIE51_RS01840 0.36 -1.2 408,807 + ABIE51_RS01840 0.36 -1.7 408,808 - ABIE51_RS01840 0.36 -1.8 408,808 - ABIE51_RS01840 0.36 -0.5 408,808 - ABIE51_RS01840 0.36 -1.5 409,084 - ABIE51_RS01840 0.62 -2.0 409,233 + ABIE51_RS01840 0.76 -1.8 409,234 - ABIE51_RS01840 0.76 -1.3 409,446 + +0.3 409,446 + -2.3 409,747 + ABIE51_RS01845 0.16 -1.9 409,748 - ABIE51_RS01845 0.16 -1.5 410,370 + ABIE51_RS01845 0.88 -0.2 410,370 + ABIE51_RS01845 0.88 -1.2 410,371 - ABIE51_RS01845 0.89 -1.4
Or see this region's nucleotide sequence