Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00245 and ABIE51_RS00250 are separated by 3 nucleotides ABIE51_RS00250 and ABIE51_RS00255 are separated by 114 nucleotides ABIE51_RS00255 and ABIE51_RS00260 are separated by 108 nucleotides
ABIE51_RS00245: ABIE51_RS00245 - tetratricopeptide repeat protein, at 49,343 to 50,893
_RS00245
ABIE51_RS00250: ABIE51_RS00250 - olefin beta-lactone synthetase, at 50,897 to 52,550
_RS00250
ABIE51_RS00255: ABIE51_RS00255 - YkgJ family cysteine cluster protein, at 52,665 to 53,048
_RS00255
ABIE51_RS00260: ABIE51_RS00260 - alpha/beta fold hydrolase, at 53,157 to 54,056
_RS00260
Position (kb) 50
51
52
53 Strain fitness (log2 ratio) -2
-1
0
1 at 49.959 kb on + strand, within ABIE51_RS00245 at 50.073 kb on + strand, within ABIE51_RS00245 at 50.073 kb on + strand, within ABIE51_RS00245 at 50.073 kb on + strand, within ABIE51_RS00245 at 50.080 kb on - strand, within ABIE51_RS00245 at 50.281 kb on - strand, within ABIE51_RS00245 at 50.281 kb on - strand, within ABIE51_RS00245 at 50.415 kb on + strand, within ABIE51_RS00245 at 50.416 kb on - strand, within ABIE51_RS00245 at 50.416 kb on - strand, within ABIE51_RS00245 at 50.634 kb on + strand, within ABIE51_RS00245 at 51.010 kb on + strand at 51.010 kb on + strand at 51.010 kb on + strand at 51.010 kb on + strand at 51.011 kb on - strand at 51.011 kb on - strand at 51.011 kb on - strand at 51.011 kb on - strand at 51.011 kb on - strand at 51.193 kb on + strand, within ABIE51_RS00250 at 51.194 kb on - strand, within ABIE51_RS00250 at 51.195 kb on + strand, within ABIE51_RS00250 at 51.196 kb on - strand, within ABIE51_RS00250 at 51.293 kb on + strand, within ABIE51_RS00250 at 51.293 kb on + strand, within ABIE51_RS00250 at 51.293 kb on + strand, within ABIE51_RS00250 at 51.294 kb on - strand, within ABIE51_RS00250 at 51.294 kb on - strand, within ABIE51_RS00250 at 51.367 kb on - strand, within ABIE51_RS00250 at 51.367 kb on - strand, within ABIE51_RS00250 at 51.367 kb on - strand, within ABIE51_RS00250 at 51.718 kb on + strand, within ABIE51_RS00250 at 52.420 kb on + strand at 52.421 kb on - strand at 52.863 kb on + strand, within ABIE51_RS00255 at 52.864 kb on - strand, within ABIE51_RS00255 at 53.158 kb on + strand at 53.158 kb on + strand at 53.159 kb on - strand at 53.227 kb on + strand at 53.227 kb on + strand at 53.227 kb on + strand at 53.227 kb on + strand at 53.227 kb on + strand at 53.227 kb on + strand at 53.228 kb on - strand at 53.228 kb on - strand at 53.228 kb on - strand at 53.228 kb on - strand at 53.354 kb on - strand, within ABIE51_RS00260 at 53.468 kb on - strand, within ABIE51_RS00260 at 53.479 kb on + strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.524 kb on + strand, within ABIE51_RS00260 at 53.524 kb on + strand, within ABIE51_RS00260 at 53.524 kb on + strand, within ABIE51_RS00260 at 53.524 kb on + strand, within ABIE51_RS00260 at 53.525 kb on - strand, within ABIE51_RS00260 at 53.525 kb on - strand, within ABIE51_RS00260
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 49,959 + ABIE51_RS00245 0.40 +0.3 50,073 + ABIE51_RS00245 0.47 +0.1 50,073 + ABIE51_RS00245 0.47 +0.0 50,073 + ABIE51_RS00245 0.47 -0.0 50,080 - ABIE51_RS00245 0.48 -0.5 50,281 - ABIE51_RS00245 0.60 -0.0 50,281 - ABIE51_RS00245 0.60 -0.9 50,415 + ABIE51_RS00245 0.69 +1.2 50,416 - ABIE51_RS00245 0.69 +0.6 50,416 - ABIE51_RS00245 0.69 +0.4 50,634 + ABIE51_RS00245 0.83 -0.1 51,010 + -0.2 51,010 + -1.3 51,010 + -0.9 51,010 + -0.6 51,011 - -0.9 51,011 - -2.0 51,011 - -1.2 51,011 - -0.1 51,011 - -1.0 51,193 + ABIE51_RS00250 0.18 -0.3 51,194 - ABIE51_RS00250 0.18 -0.8 51,195 + ABIE51_RS00250 0.18 -0.1 51,196 - ABIE51_RS00250 0.18 -1.8 51,293 + ABIE51_RS00250 0.24 -1.7 51,293 + ABIE51_RS00250 0.24 -1.3 51,293 + ABIE51_RS00250 0.24 -1.5 51,294 - ABIE51_RS00250 0.24 -1.2 51,294 - ABIE51_RS00250 0.24 +0.2 51,367 - ABIE51_RS00250 0.28 -0.6 51,367 - ABIE51_RS00250 0.28 -0.7 51,367 - ABIE51_RS00250 0.28 -1.0 51,718 + ABIE51_RS00250 0.50 -2.4 52,420 + -1.3 52,421 - -1.1 52,863 + ABIE51_RS00255 0.52 -0.3 52,864 - ABIE51_RS00255 0.52 -0.4 53,158 + -1.0 53,158 + +0.2 53,159 - +0.0 53,227 + -0.1 53,227 + -0.6 53,227 + -0.1 53,227 + -0.2 53,227 + -1.4 53,227 + +0.0 53,228 - +0.5 53,228 - -0.3 53,228 - -0.3 53,228 - -0.1 53,354 - ABIE51_RS00260 0.22 -0.7 53,468 - ABIE51_RS00260 0.35 -0.3 53,479 + ABIE51_RS00260 0.36 -0.3 53,480 - ABIE51_RS00260 0.36 -0.9 53,480 - ABIE51_RS00260 0.36 -0.8 53,480 - ABIE51_RS00260 0.36 +0.8 53,480 - ABIE51_RS00260 0.36 +1.1 53,480 - ABIE51_RS00260 0.36 -0.3 53,480 - ABIE51_RS00260 0.36 -0.4 53,480 - ABIE51_RS00260 0.36 +0.6 53,524 + ABIE51_RS00260 0.41 +0.4 53,524 + ABIE51_RS00260 0.41 -0.5 53,524 + ABIE51_RS00260 0.41 -0.7 53,524 + ABIE51_RS00260 0.41 +0.1 53,525 - ABIE51_RS00260 0.41 -0.6 53,525 - ABIE51_RS00260 0.41 +0.9
Or see this region's nucleotide sequence