Experiment: Ying_AminoAcid20 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04085 and ABIE51_RS04090 are separated by 82 nucleotides ABIE51_RS04090 and ABIE51_RS04095 are separated by 72 nucleotides ABIE51_RS04095 and ABIE51_RS04100 are separated by 73 nucleotides
ABIE51_RS04085: ABIE51_RS04085 - homogentisate 1,2-dioxygenase, at 887,629 to 888,936
_RS04085
ABIE51_RS04090: ABIE51_RS04090 - hypothetical protein, at 889,019 to 889,654
_RS04090
ABIE51_RS04095: ABIE51_RS04095 - sodium:calcium antiporter, at 889,727 to 890,680
_RS04095
ABIE51_RS04100: ABIE51_RS04100 - Na+/H+ antiporter NhaA, at 890,754 to 891,974
_RS04100
Position (kb) 889
890
891 Strain fitness (log2 ratio) -2
-1
0
1 at 888.982 kb on + strand at 888.982 kb on + strand at 888.982 kb on + strand at 888.982 kb on + strand at 888.983 kb on - strand at 888.983 kb on - strand at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.323 kb on - strand, within ABIE51_RS04090 at 889.323 kb on - strand, within ABIE51_RS04090 at 889.475 kb on + strand, within ABIE51_RS04090 at 889.476 kb on - strand, within ABIE51_RS04090 at 889.476 kb on - strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.526 kb on + strand, within ABIE51_RS04090 at 889.526 kb on + strand, within ABIE51_RS04090 at 889.526 kb on + strand, within ABIE51_RS04090 at 889.527 kb on - strand, within ABIE51_RS04090 at 889.527 kb on - strand, within ABIE51_RS04090 at 889.634 kb on + strand at 889.668 kb on + strand at 889.691 kb on + strand at 889.691 kb on + strand at 889.692 kb on - strand at 889.692 kb on - strand at 889.740 kb on + strand at 889.741 kb on - strand at 889.741 kb on - strand at 889.753 kb on - strand at 890.150 kb on + strand, within ABIE51_RS04095 at 890.150 kb on + strand, within ABIE51_RS04095 at 890.151 kb on - strand, within ABIE51_RS04095 at 890.274 kb on - strand, within ABIE51_RS04095 at 890.274 kb on - strand, within ABIE51_RS04095 at 890.577 kb on - strand, within ABIE51_RS04095 at 890.577 kb on - strand, within ABIE51_RS04095 at 890.728 kb on - strand at 890.728 kb on - strand at 890.729 kb on + strand at 890.729 kb on + strand at 890.730 kb on - strand at 890.730 kb on - strand at 890.730 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 1 remove 888,982 + +0.9 888,982 + +0.8 888,982 + +0.8 888,982 + -1.1 888,983 - -0.4 888,983 - -0.1 889,319 + ABIE51_RS04090 0.47 +0.7 889,319 + ABIE51_RS04090 0.47 +1.3 889,319 + ABIE51_RS04090 0.47 -0.1 889,319 + ABIE51_RS04090 0.47 -0.3 889,319 + ABIE51_RS04090 0.47 +0.7 889,320 - ABIE51_RS04090 0.47 +0.3 889,320 - ABIE51_RS04090 0.47 -0.1 889,320 - ABIE51_RS04090 0.47 +0.3 889,320 - ABIE51_RS04090 0.47 +1.7 889,320 - ABIE51_RS04090 0.47 +0.3 889,322 + ABIE51_RS04090 0.48 +0.2 889,322 + ABIE51_RS04090 0.48 +0.1 889,322 + ABIE51_RS04090 0.48 +1.1 889,322 + ABIE51_RS04090 0.48 +0.6 889,323 - ABIE51_RS04090 0.48 +0.3 889,323 - ABIE51_RS04090 0.48 -0.2 889,475 + ABIE51_RS04090 0.72 +0.5 889,476 - ABIE51_RS04090 0.72 +0.1 889,476 - ABIE51_RS04090 0.72 -0.4 889,508 + ABIE51_RS04090 0.77 +0.6 889,508 + ABIE51_RS04090 0.77 +1.2 889,508 + ABIE51_RS04090 0.77 +0.3 889,508 + ABIE51_RS04090 0.77 +0.2 889,509 - ABIE51_RS04090 0.77 +0.2 889,509 - ABIE51_RS04090 0.77 +1.0 889,509 - ABIE51_RS04090 0.77 +0.8 889,509 - ABIE51_RS04090 0.77 +0.0 889,526 + ABIE51_RS04090 0.80 +0.2 889,526 + ABIE51_RS04090 0.80 +0.5 889,526 + ABIE51_RS04090 0.80 +0.4 889,527 - ABIE51_RS04090 0.80 +0.0 889,527 - ABIE51_RS04090 0.80 -0.3 889,634 + +0.6 889,668 + +1.7 889,691 + +0.3 889,691 + +0.1 889,692 - +0.2 889,692 - +0.1 889,740 + +0.9 889,741 - -0.1 889,741 - -0.3 889,753 - -0.0 890,150 + ABIE51_RS04095 0.44 -0.4 890,150 + ABIE51_RS04095 0.44 -1.8 890,151 - ABIE51_RS04095 0.44 +0.3 890,274 - ABIE51_RS04095 0.57 +0.7 890,274 - ABIE51_RS04095 0.57 +0.5 890,577 - ABIE51_RS04095 0.89 +0.8 890,577 - ABIE51_RS04095 0.89 -0.2 890,728 - +0.4 890,728 - +0.4 890,729 + +0.3 890,729 + -0.6 890,730 - +0.2 890,730 - -0.3 890,730 - -0.4
Or see this region's nucleotide sequence