Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02890 and ABIE51_RS02895 are separated by 191 nucleotides ABIE51_RS02895 and ABIE51_RS02900 are separated by 185 nucleotides ABIE51_RS02900 and ABIE51_RS02905 overlap by 4 nucleotides
ABIE51_RS02890: ABIE51_RS02890 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 641,945 to 642,580
_RS02890
ABIE51_RS02895: ABIE51_RS02895 - HU family DNA-binding protein, at 642,772 to 643,155
_RS02895
ABIE51_RS02900: ABIE51_RS02900 - nucleotidyltransferase family protein, at 643,341 to 643,949
_RS02900
ABIE51_RS02905: ABIE51_RS02905 - XdhC family protein, at 643,946 to 644,974
_RS02905
Position (kb) 643
644 Strain fitness (log2 ratio) -1
0
1
2
3 at 642.452 kb on + strand, within ABIE51_RS02890 at 642.452 kb on + strand, within ABIE51_RS02890 at 642.453 kb on - strand, within ABIE51_RS02890 at 642.453 kb on - strand, within ABIE51_RS02890 at 642.453 kb on - strand, within ABIE51_RS02890 at 642.453 kb on - strand, within ABIE51_RS02890 at 642.654 kb on + strand at 642.708 kb on - strand at 642.708 kb on - strand at 642.722 kb on + strand at 642.722 kb on + strand at 642.722 kb on + strand at 642.722 kb on + strand at 642.723 kb on - strand at 642.723 kb on - strand at 642.723 kb on - strand at 642.723 kb on - strand at 642.733 kb on + strand at 642.757 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.771 kb on + strand at 642.772 kb on - strand at 642.772 kb on - strand at 642.772 kb on - strand at 642.772 kb on - strand at 642.772 kb on - strand at 643.243 kb on + strand at 643.286 kb on + strand at 643.286 kb on + strand at 643.287 kb on - strand at 643.292 kb on + strand at 643.292 kb on + strand at 643.292 kb on + strand at 643.293 kb on - strand at 643.293 kb on - strand at 643.293 kb on - strand at 644.390 kb on + strand, within ABIE51_RS02905 at 644.390 kb on + strand, within ABIE51_RS02905 at 644.391 kb on - strand, within ABIE51_RS02905 at 644.391 kb on - strand, within ABIE51_RS02905 at 644.808 kb on + strand, within ABIE51_RS02905 at 644.808 kb on + strand, within ABIE51_RS02905 at 644.808 kb on + strand, within ABIE51_RS02905 at 644.808 kb on + strand, within ABIE51_RS02905 at 644.809 kb on - strand, within ABIE51_RS02905
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 642,452 + ABIE51_RS02890 0.80 -0.2 642,452 + ABIE51_RS02890 0.80 -0.8 642,453 - ABIE51_RS02890 0.80 +0.1 642,453 - ABIE51_RS02890 0.80 -0.4 642,453 - ABIE51_RS02890 0.80 +0.0 642,453 - ABIE51_RS02890 0.80 +1.0 642,654 + -1.4 642,708 - +1.3 642,708 - +0.8 642,722 + +0.9 642,722 + +0.0 642,722 + +0.3 642,722 + +0.9 642,723 - +1.8 642,723 - +2.2 642,723 - +1.4 642,723 - +1.4 642,733 + +0.8 642,757 + +1.2 642,771 + +1.4 642,771 + +1.1 642,771 + +1.0 642,771 + +2.1 642,771 + +0.8 642,771 + +2.0 642,771 + +0.2 642,771 + +2.3 642,771 + +1.7 642,772 - +2.7 642,772 - +3.1 642,772 - +0.4 642,772 - +0.2 642,772 - +1.8 643,243 + -0.0 643,286 + +0.8 643,286 + -0.7 643,287 - -0.4 643,292 + -0.2 643,292 + -0.7 643,292 + +0.2 643,293 - +0.5 643,293 - -0.9 643,293 - +0.3 644,390 + ABIE51_RS02905 0.43 -0.1 644,390 + ABIE51_RS02905 0.43 +0.6 644,391 - ABIE51_RS02905 0.43 -0.3 644,391 - ABIE51_RS02905 0.43 -0.4 644,808 + ABIE51_RS02905 0.84 -1.3 644,808 + ABIE51_RS02905 0.84 -0.8 644,808 + ABIE51_RS02905 0.84 +1.0 644,808 + ABIE51_RS02905 0.84 +1.6 644,809 - ABIE51_RS02905 0.84 +0.2
Or see this region's nucleotide sequence