Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS10080

Experiment: Ying_AminoAcid20 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS10075 and ABIE51_RS10080 are separated by 16 nucleotidesABIE51_RS10080 and ABIE51_RS10085 are separated by 142 nucleotides ABIE51_RS10075: ABIE51_RS10075 - basic amino acid/polyamine antiporter, at 2,169,518 to 2,170,942 _RS10075 ABIE51_RS10080: ABIE51_RS10080 - arginine deiminase, at 2,170,959 to 2,172,212 _RS10080 ABIE51_RS10085: ABIE51_RS10085 - efflux RND transporter periplasmic adaptor subunit, at 2,172,355 to 2,173,461 _RS10085 Position (kb) 2170 2171 2172 2173Strain fitness (log2 ratio) -1 0 1at 2170.226 kb on - strand, within ABIE51_RS10075at 2170.556 kb on + strand, within ABIE51_RS10075at 2170.556 kb on + strand, within ABIE51_RS10075at 2170.557 kb on - strand, within ABIE51_RS10075at 2170.670 kb on + strand, within ABIE51_RS10075at 2170.730 kb on + strand, within ABIE51_RS10075at 2170.730 kb on + strand, within ABIE51_RS10075at 2170.738 kb on - strand, within ABIE51_RS10075at 2170.738 kb on - strand, within ABIE51_RS10075at 2170.790 kb on + strand, within ABIE51_RS10075at 2170.811 kb on + strandat 2170.856 kb on - strandat 2171.289 kb on + strand, within ABIE51_RS10080at 2171.418 kb on + strand, within ABIE51_RS10080at 2171.475 kb on + strand, within ABIE51_RS10080at 2171.864 kb on + strand, within ABIE51_RS10080at 2171.865 kb on - strand, within ABIE51_RS10080at 2171.865 kb on - strand, within ABIE51_RS10080at 2171.874 kb on + strand, within ABIE51_RS10080at 2172.064 kb on - strand, within ABIE51_RS10080at 2172.064 kb on - strand, within ABIE51_RS10080at 2172.084 kb on + strand, within ABIE51_RS10080at 2172.085 kb on - strand, within ABIE51_RS10080at 2172.210 kb on + strandat 2172.211 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1
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2,170,226 - ABIE51_RS10075 0.50 -0.5
2,170,556 + ABIE51_RS10075 0.73 -1.4
2,170,556 + ABIE51_RS10075 0.73 -0.4
2,170,557 - ABIE51_RS10075 0.73 -0.6
2,170,670 + ABIE51_RS10075 0.81 -0.3
2,170,730 + ABIE51_RS10075 0.85 +0.0
2,170,730 + ABIE51_RS10075 0.85 -0.2
2,170,738 - ABIE51_RS10075 0.86 -0.4
2,170,738 - ABIE51_RS10075 0.86 -0.4
2,170,790 + ABIE51_RS10075 0.89 +0.6
2,170,811 + +0.1
2,170,856 - +0.1
2,171,289 + ABIE51_RS10080 0.26 +0.1
2,171,418 + ABIE51_RS10080 0.37 +0.4
2,171,475 + ABIE51_RS10080 0.41 -0.1
2,171,864 + ABIE51_RS10080 0.72 -0.0
2,171,865 - ABIE51_RS10080 0.72 +0.8
2,171,865 - ABIE51_RS10080 0.72 -0.2
2,171,874 + ABIE51_RS10080 0.73 -0.3
2,172,064 - ABIE51_RS10080 0.88 -0.3
2,172,064 - ABIE51_RS10080 0.88 +0.2
2,172,084 + ABIE51_RS10080 0.90 +0.2
2,172,085 - ABIE51_RS10080 0.90 -0.6
2,172,210 + +0.2
2,172,211 - +0.2

Or see this region's nucleotide sequence