Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS17580

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS17575 and ABIE51_RS17580 overlap by 1 nucleotidesABIE51_RS17580 and ABIE51_RS17585 overlap by 11 nucleotides ABIE51_RS17575: ABIE51_RS17575 - 3-isopropylmalate dehydratase large subunit, at 3,841,896 to 3,843,344 _RS17575 ABIE51_RS17580: ABIE51_RS17580 - 3-isopropylmalate dehydratase small subunit, at 3,843,344 to 3,843,943 _RS17580 ABIE51_RS17585: ABIE51_RS17585 - 3-isopropylmalate dehydrogenase, at 3,843,933 to 3,845,021 _RS17585 Position (kb) 3843 3844Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3842.871 kb on + strand, within ABIE51_RS17575at 3843.172 kb on + strand, within ABIE51_RS17575at 3843.292 kb on - strandat 3843.705 kb on + strand, within ABIE51_RS17580at 3843.705 kb on + strand, within ABIE51_RS17580at 3843.705 kb on + strand, within ABIE51_RS17580at 3844.237 kb on - strand, within ABIE51_RS17585at 3844.404 kb on + strand, within ABIE51_RS17585at 3844.627 kb on - strand, within ABIE51_RS17585at 3844.747 kb on - strand, within ABIE51_RS17585at 3844.852 kb on + strand, within ABIE51_RS17585at 3844.853 kb on - strand, within ABIE51_RS17585

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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3,842,871 + ABIE51_RS17575 0.67 -4.4
3,843,172 + ABIE51_RS17575 0.88 -2.6
3,843,292 - -1.1
3,843,705 + ABIE51_RS17580 0.60 -2.4
3,843,705 + ABIE51_RS17580 0.60 -4.6
3,843,705 + ABIE51_RS17580 0.60 -0.9
3,844,237 - ABIE51_RS17585 0.28 -2.6
3,844,404 + ABIE51_RS17585 0.43 -2.4
3,844,627 - ABIE51_RS17585 0.64 -3.4
3,844,747 - ABIE51_RS17585 0.75 -4.0
3,844,852 + ABIE51_RS17585 0.84 -4.5
3,844,853 - ABIE51_RS17585 0.84 -2.8

Or see this region's nucleotide sequence