Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08260

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08250 and ABIE51_RS08255 are separated by 9 nucleotidesABIE51_RS08255 and ABIE51_RS08260 are separated by 79 nucleotidesABIE51_RS08260 and ABIE51_RS08265 are separated by 144 nucleotides ABIE51_RS08250: ABIE51_RS08250 - phosphoribosylanthranilate isomerase, at 1,754,683 to 1,755,324 _RS08250 ABIE51_RS08255: ABIE51_RS08255 - LysR family transcriptional regulator, at 1,755,334 to 1,756,221 _RS08255 ABIE51_RS08260: ABIE51_RS08260 - tryptophan synthase subunit beta, at 1,756,301 to 1,757,509 _RS08260 ABIE51_RS08265: ABIE51_RS08265 - tryptophan synthase subunit alpha, at 1,757,654 to 1,758,472 _RS08265 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1755.539 kb on + strand, within ABIE51_RS08255at 1755.539 kb on + strand, within ABIE51_RS08255at 1755.539 kb on + strand, within ABIE51_RS08255at 1755.540 kb on - strand, within ABIE51_RS08255at 1755.540 kb on - strand, within ABIE51_RS08255at 1755.542 kb on + strand, within ABIE51_RS08255at 1755.542 kb on + strand, within ABIE51_RS08255at 1755.542 kb on + strand, within ABIE51_RS08255at 1755.543 kb on - strand, within ABIE51_RS08255at 1755.543 kb on - strand, within ABIE51_RS08255at 1755.543 kb on - strand, within ABIE51_RS08255at 1755.543 kb on - strand, within ABIE51_RS08255at 1755.543 kb on - strand, within ABIE51_RS08255at 1755.543 kb on - strand, within ABIE51_RS08255at 1756.112 kb on - strand, within ABIE51_RS08255at 1756.112 kb on - strand, within ABIE51_RS08255at 1756.112 kb on - strand, within ABIE51_RS08255at 1756.112 kb on - strand, within ABIE51_RS08255at 1756.208 kb on - strandat 1756.260 kb on + strandat 1756.260 kb on + strandat 1756.290 kb on - strandat 1756.290 kb on - strandat 1756.475 kb on + strand, within ABIE51_RS08260at 1756.475 kb on + strand, within ABIE51_RS08260at 1756.475 kb on + strand, within ABIE51_RS08260at 1756.475 kb on + strand, within ABIE51_RS08260at 1756.475 kb on + strand, within ABIE51_RS08260at 1756.476 kb on - strand, within ABIE51_RS08260at 1756.476 kb on - strand, within ABIE51_RS08260at 1756.476 kb on - strand, within ABIE51_RS08260at 1756.476 kb on - strand, within ABIE51_RS08260at 1756.499 kb on + strand, within ABIE51_RS08260at 1756.500 kb on - strand, within ABIE51_RS08260at 1756.721 kb on + strand, within ABIE51_RS08260at 1756.721 kb on + strand, within ABIE51_RS08260at 1756.721 kb on + strand, within ABIE51_RS08260at 1756.722 kb on - strand, within ABIE51_RS08260at 1756.722 kb on - strand, within ABIE51_RS08260at 1756.722 kb on - strand, within ABIE51_RS08260at 1756.722 kb on - strand, within ABIE51_RS08260at 1756.880 kb on + strand, within ABIE51_RS08260at 1756.880 kb on + strand, within ABIE51_RS08260at 1756.880 kb on + strand, within ABIE51_RS08260at 1756.880 kb on + strand, within ABIE51_RS08260at 1756.881 kb on - strand, within ABIE51_RS08260at 1756.881 kb on - strand, within ABIE51_RS08260at 1756.881 kb on - strand, within ABIE51_RS08260at 1756.881 kb on - strand, within ABIE51_RS08260at 1756.881 kb on - strand, within ABIE51_RS08260at 1756.881 kb on - strand, within ABIE51_RS08260at 1756.881 kb on - strand, within ABIE51_RS08260at 1756.974 kb on + strand, within ABIE51_RS08260at 1756.982 kb on + strand, within ABIE51_RS08260at 1756.983 kb on - strand, within ABIE51_RS08260at 1757.177 kb on + strand, within ABIE51_RS08260at 1757.177 kb on + strand, within ABIE51_RS08260at 1757.177 kb on + strand, within ABIE51_RS08260at 1757.177 kb on + strand, within ABIE51_RS08260at 1757.177 kb on + strand, within ABIE51_RS08260at 1757.178 kb on - strand, within ABIE51_RS08260at 1757.178 kb on - strand, within ABIE51_RS08260at 1757.178 kb on - strand, within ABIE51_RS08260at 1757.178 kb on - strand, within ABIE51_RS08260at 1757.295 kb on - strand, within ABIE51_RS08260at 1757.295 kb on - strand, within ABIE51_RS08260at 1757.507 kb on + strandat 1757.507 kb on + strandat 1757.507 kb on + strandat 1757.508 kb on - strandat 1757.508 kb on - strandat 1758.170 kb on + strand, within ABIE51_RS08265at 1758.170 kb on + strand, within ABIE51_RS08265at 1758.170 kb on + strand, within ABIE51_RS08265at 1758.171 kb on - strand, within ABIE51_RS08265at 1758.176 kb on + strand, within ABIE51_RS08265at 1758.176 kb on + strand, within ABIE51_RS08265at 1758.176 kb on + strand, within ABIE51_RS08265at 1758.176 kb on + strand, within ABIE51_RS08265at 1758.177 kb on - strand, within ABIE51_RS08265at 1758.177 kb on - strand, within ABIE51_RS08265at 1758.177 kb on - strand, within ABIE51_RS08265at 1758.177 kb on - strand, within ABIE51_RS08265at 1758.179 kb on + strand, within ABIE51_RS08265at 1758.179 kb on + strand, within ABIE51_RS08265at 1758.179 kb on + strand, within ABIE51_RS08265at 1758.179 kb on + strand, within ABIE51_RS08265at 1758.180 kb on - strand, within ABIE51_RS08265at 1758.180 kb on - strand, within ABIE51_RS08265at 1758.180 kb on - strand, within ABIE51_RS08265at 1758.180 kb on - strand, within ABIE51_RS08265at 1758.180 kb on - strand, within ABIE51_RS08265at 1758.180 kb on - strand, within ABIE51_RS08265at 1758.399 kb on + strandat 1758.400 kb on - strandat 1758.400 kb on - strandat 1758.471 kb on - strandat 1758.504 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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1,755,539 + ABIE51_RS08255 0.23 -1.4
1,755,539 + ABIE51_RS08255 0.23 -0.4
1,755,539 + ABIE51_RS08255 0.23 -0.3
1,755,540 - ABIE51_RS08255 0.23 -0.2
1,755,540 - ABIE51_RS08255 0.23 -1.0
1,755,542 + ABIE51_RS08255 0.23 -1.1
1,755,542 + ABIE51_RS08255 0.23 -0.0
1,755,542 + ABIE51_RS08255 0.23 -0.1
1,755,543 - ABIE51_RS08255 0.24 +0.1
1,755,543 - ABIE51_RS08255 0.24 -1.6
1,755,543 - ABIE51_RS08255 0.24 -0.4
1,755,543 - ABIE51_RS08255 0.24 +0.2
1,755,543 - ABIE51_RS08255 0.24 -1.1
1,755,543 - ABIE51_RS08255 0.24 +0.9
1,756,112 - ABIE51_RS08255 0.88 -1.4
1,756,112 - ABIE51_RS08255 0.88 -0.4
1,756,112 - ABIE51_RS08255 0.88 -0.8
1,756,112 - ABIE51_RS08255 0.88 -0.9
1,756,208 - +0.1
1,756,260 + +0.2
1,756,260 + +0.4
1,756,290 - +0.4
1,756,290 - +0.0
1,756,475 + ABIE51_RS08260 0.14 -3.2
1,756,475 + ABIE51_RS08260 0.14 -3.6
1,756,475 + ABIE51_RS08260 0.14 -0.8
1,756,475 + ABIE51_RS08260 0.14 -2.5
1,756,475 + ABIE51_RS08260 0.14 -3.8
1,756,476 - ABIE51_RS08260 0.14 -1.6
1,756,476 - ABIE51_RS08260 0.14 -0.8
1,756,476 - ABIE51_RS08260 0.14 -2.0
1,756,476 - ABIE51_RS08260 0.14 -1.0
1,756,499 + ABIE51_RS08260 0.16 -2.4
1,756,500 - ABIE51_RS08260 0.16 -1.3
1,756,721 + ABIE51_RS08260 0.35 -3.8
1,756,721 + ABIE51_RS08260 0.35 -1.3
1,756,721 + ABIE51_RS08260 0.35 +0.7
1,756,722 - ABIE51_RS08260 0.35 -2.2
1,756,722 - ABIE51_RS08260 0.35 -2.2
1,756,722 - ABIE51_RS08260 0.35 -2.3
1,756,722 - ABIE51_RS08260 0.35 -1.8
1,756,880 + ABIE51_RS08260 0.48 -2.5
1,756,880 + ABIE51_RS08260 0.48 -2.9
1,756,880 + ABIE51_RS08260 0.48 -3.3
1,756,880 + ABIE51_RS08260 0.48 -2.5
1,756,881 - ABIE51_RS08260 0.48 -2.2
1,756,881 - ABIE51_RS08260 0.48 -3.3
1,756,881 - ABIE51_RS08260 0.48 -2.7
1,756,881 - ABIE51_RS08260 0.48 -2.5
1,756,881 - ABIE51_RS08260 0.48 -1.7
1,756,881 - ABIE51_RS08260 0.48 -1.5
1,756,881 - ABIE51_RS08260 0.48 -0.8
1,756,974 + ABIE51_RS08260 0.56 -0.8
1,756,982 + ABIE51_RS08260 0.56 -2.6
1,756,983 - ABIE51_RS08260 0.56 -3.7
1,757,177 + ABIE51_RS08260 0.72 -0.7
1,757,177 + ABIE51_RS08260 0.72 -2.1
1,757,177 + ABIE51_RS08260 0.72 -1.8
1,757,177 + ABIE51_RS08260 0.72 -1.8
1,757,177 + ABIE51_RS08260 0.72 -1.6
1,757,178 - ABIE51_RS08260 0.73 -2.3
1,757,178 - ABIE51_RS08260 0.73 -1.3
1,757,178 - ABIE51_RS08260 0.73 -1.6
1,757,178 - ABIE51_RS08260 0.73 -2.2
1,757,295 - ABIE51_RS08260 0.82 -0.6
1,757,295 - ABIE51_RS08260 0.82 -1.1
1,757,507 + +0.2
1,757,507 + +0.3
1,757,507 + +1.0
1,757,508 - +0.4
1,757,508 - -1.1
1,758,170 + ABIE51_RS08265 0.63 -3.2
1,758,170 + ABIE51_RS08265 0.63 -2.3
1,758,170 + ABIE51_RS08265 0.63 -2.0
1,758,171 - ABIE51_RS08265 0.63 -2.7
1,758,176 + ABIE51_RS08265 0.64 -3.7
1,758,176 + ABIE51_RS08265 0.64 -1.7
1,758,176 + ABIE51_RS08265 0.64 -4.0
1,758,176 + ABIE51_RS08265 0.64 -2.1
1,758,177 - ABIE51_RS08265 0.64 -3.3
1,758,177 - ABIE51_RS08265 0.64 -2.6
1,758,177 - ABIE51_RS08265 0.64 -4.0
1,758,177 - ABIE51_RS08265 0.64 -2.0
1,758,179 + ABIE51_RS08265 0.64 -2.6
1,758,179 + ABIE51_RS08265 0.64 -2.0
1,758,179 + ABIE51_RS08265 0.64 -2.1
1,758,179 + ABIE51_RS08265 0.64 -3.3
1,758,180 - ABIE51_RS08265 0.64 -1.9
1,758,180 - ABIE51_RS08265 0.64 -3.4
1,758,180 - ABIE51_RS08265 0.64 -1.1
1,758,180 - ABIE51_RS08265 0.64 -2.9
1,758,180 - ABIE51_RS08265 0.64 -2.1
1,758,180 - ABIE51_RS08265 0.64 -0.3
1,758,399 + -3.3
1,758,400 - -3.0
1,758,400 - -2.0
1,758,471 - +0.1
1,758,504 - +0.0

Or see this region's nucleotide sequence