Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS05975

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
1,268,735	+				+0.5
1,268,735	+				+0.2
1,268,736	-				-0.3
1,268,736	-				-0.6
1,268,736	-				+0.0
1,268,736	-				-0.5
1,268,736	-				-0.2
1,268,756	+				+0.1
1,268,804	+				-0.3
1,268,804	+				+0.2
1,268,804	+				-0.2
1,268,805	-				+0.1
1,268,805	-				+0.1
1,269,330	+				-0.3
1,269,330	+				+0.1
1,269,331	-				-0.4
1,269,331	-				-0.2
1,269,411	-				-3.8
1,269,411	-				-3.4
1,269,445	+				-2.2
1,269,445	+				-3.9
1,269,445	+				-3.3
1,269,445	+				-1.7
1,269,446	-				-3.2
1,269,598	+		ABIE51_RS05975	0.11	-2.5
1,269,599	-		ABIE51_RS05975	0.11	-2.5
1,269,599	-		ABIE51_RS05975	0.11	-1.4
1,269,599	-		ABIE51_RS05975	0.11	-1.1
1,269,599	-		ABIE51_RS05975	0.11	-0.7
1,269,813	-		ABIE51_RS05975	0.27	-1.3
1,269,813	-		ABIE51_RS05975	0.27	-2.7
1,269,869	+		ABIE51_RS05975	0.31	-3.4
1,269,869	+		ABIE51_RS05975	0.31	-3.4
1,269,869	+		ABIE51_RS05975	0.31	-3.0
1,269,870	-		ABIE51_RS05975	0.31	-1.6
1,269,870	-		ABIE51_RS05975	0.31	-0.3
1,269,870	-		ABIE51_RS05975	0.31	-1.7
1,269,870	-		ABIE51_RS05975	0.31	-0.9
1,269,870	-		ABIE51_RS05975	0.31	-3.2
1,270,025	+		ABIE51_RS05975	0.42	-1.7
1,270,071	-		ABIE51_RS05975	0.45	-2.7
1,270,163	+		ABIE51_RS05975	0.52	-1.5
1,270,163	+		ABIE51_RS05975	0.52	-0.6
1,270,163	+		ABIE51_RS05975	0.52	-3.2
1,270,164	-		ABIE51_RS05975	0.52	-1.9
1,270,164	-		ABIE51_RS05975	0.52	-4.3
1,270,193	+		ABIE51_RS05975	0.54	-1.5
1,270,193	+		ABIE51_RS05975	0.54	-3.9
1,270,256	+		ABIE51_RS05975	0.59	-1.1
1,270,257	-		ABIE51_RS05975	0.59	-2.0
1,270,257	-		ABIE51_RS05975	0.59	-2.6
1,270,308	-		ABIE51_RS05975	0.62	-2.3
1,270,308	-		ABIE51_RS05975	0.62	-2.7
1,270,560	-		ABIE51_RS05975	0.81	-1.1
1,270,730	+				-2.1
1,270,730	+				-1.7
1,270,760	+				-2.9
1,270,760	+				+1.1
1,270,761	-				-2.9
1,270,761	-				-4.1
1,270,826	+				+0.2
1,270,835	+				+0.1
1,270,835	+				-0.1
1,270,835	+				-0.2
1,270,836	-				+0.8
1,270,836	-				+0.5
1,270,978	+				+0.2
1,270,978	+				-0.6
1,270,978	+				+0.0
1,270,978	+				-1.1
1,270,979	-				-0.2
1,271,050	+				-0.3
1,271,050	+				+0.9
1,271,050	+				-0.1
1,271,050	+				-0.0
1,271,050	+				+2.3
1,271,050	+				-0.2
1,271,051	-				-0.1
1,271,051	-				+0.7
1,271,051	-				-0.1
1,271,051	-				-0.5
1,271,051	-				-0.2
1,271,104	+		ABIE51_RS05980	0.12	+0.2
1,271,104	+		ABIE51_RS05980	0.12	+0.1
1,271,104	+		ABIE51_RS05980	0.12	+0.1
1,271,199	+		ABIE51_RS05980	0.18	-0.2
1,271,199	+		ABIE51_RS05980	0.18	+0.2
1,271,199	+		ABIE51_RS05980	0.18	+0.0
1,271,199	+		ABIE51_RS05980	0.18	+0.0
1,271,199	+		ABIE51_RS05980	0.18	-0.2
1,271,199	+		ABIE51_RS05980	0.18	-0.0
1,271,200	-		ABIE51_RS05980	0.18	+0.3
1,271,200	-		ABIE51_RS05980	0.18	-0.5
1,271,200	-		ABIE51_RS05980	0.18	-0.5
1,271,200	-		ABIE51_RS05980	0.18	+0.1
1,271,200	-		ABIE51_RS05980	0.18	+0.3
1,271,200	-		ABIE51_RS05980	0.18	-0.3
1,271,200	-		ABIE51_RS05980	0.18	-0.0
1,271,200	-		ABIE51_RS05980	0.18	+0.5
1,271,260	+		ABIE51_RS05980	0.22	-0.2
1,271,260	+		ABIE51_RS05980	0.22	-0.4
1,271,260	+		ABIE51_RS05980	0.22	+0.1
1,271,260	+		ABIE51_RS05980	0.22	-0.2
1,271,261	-		ABIE51_RS05980	0.22	-0.7
1,271,261	-		ABIE51_RS05980	0.22	-0.6
1,271,353	+		ABIE51_RS05980	0.27	+1.4
1,271,353	+		ABIE51_RS05980	0.27	+0.7
1,271,353	+		ABIE51_RS05980	0.27	+0.5
1,271,353	+		ABIE51_RS05980	0.27	-0.0
1,271,354	-		ABIE51_RS05980	0.28	-0.3
1,271,354	-		ABIE51_RS05980	0.28	-0.3
1,271,354	-		ABIE51_RS05980	0.28	-0.2
1,271,405	-		ABIE51_RS05980	0.31	-0.2
1,271,431	+		ABIE51_RS05980	0.32	-0.1
1,271,432	-		ABIE51_RS05980	0.32	-0.3
1,271,432	-		ABIE51_RS05980	0.32	-0.1
1,271,432	-		ABIE51_RS05980	0.32	+0.2
1,271,432	-		ABIE51_RS05980	0.32	-0.1
1,271,629	+		ABIE51_RS05980	0.44	+1.5