Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS05530 and ABIE51_RS05535 are separated by 149 nucleotides ABIE51_RS05535 and ABIE51_RS05540 are separated by 1 nucleotides ABIE51_RS05540 and ABIE51_RS05545 are separated by 19 nucleotides ABIE51_RS05545 and ABIE51_RS05550 are separated by 126 nucleotides
ABIE51_RS05530: ABIE51_RS05530 - NAD(P) transhydrogenase subunit alpha, at 1,195,258 to 1,196,400
_RS05530
ABIE51_RS05535: ABIE51_RS05535 - DUF3106 domain-containing protein, at 1,196,550 to 1,197,011
_RS05535
ABIE51_RS05540: ABIE51_RS05540 - hypothetical protein, at 1,197,013 to 1,197,405
_RS05540
ABIE51_RS05545: ABIE51_RS05545 - RNA polymerase sigma factor, at 1,197,425 to 1,197,940
_RS05545
ABIE51_RS05550: ABIE51_RS05550 - hypothetical protein, at 1,198,067 to 1,198,423
_RS05550
Position (kb) 1197
1198 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1196.243 kb on + strand, within ABIE51_RS05530 at 1196.243 kb on + strand, within ABIE51_RS05530 at 1196.243 kb on + strand, within ABIE51_RS05530 at 1196.244 kb on - strand, within ABIE51_RS05530 at 1196.244 kb on - strand, within ABIE51_RS05530 at 1196.256 kb on + strand, within ABIE51_RS05530 at 1196.256 kb on + strand, within ABIE51_RS05530 at 1196.256 kb on + strand, within ABIE51_RS05530 at 1196.433 kb on + strand at 1197.031 kb on + strand at 1197.032 kb on - strand at 1197.032 kb on - strand at 1197.032 kb on - strand at 1197.032 kb on - strand at 1197.062 kb on + strand, within ABIE51_RS05540 at 1197.062 kb on + strand, within ABIE51_RS05540 at 1197.063 kb on - strand, within ABIE51_RS05540 at 1197.612 kb on + strand, within ABIE51_RS05545 at 1197.612 kb on + strand, within ABIE51_RS05545 at 1197.612 kb on + strand, within ABIE51_RS05545 at 1197.613 kb on - strand, within ABIE51_RS05545 at 1197.613 kb on - strand, within ABIE51_RS05545 at 1197.805 kb on - strand, within ABIE51_RS05545 at 1198.385 kb on + strand, within ABIE51_RS05550
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 1,196,243 + ABIE51_RS05530 0.86 -0.1 1,196,243 + ABIE51_RS05530 0.86 +0.3 1,196,243 + ABIE51_RS05530 0.86 -0.6 1,196,244 - ABIE51_RS05530 0.86 +0.5 1,196,244 - ABIE51_RS05530 0.86 +0.0 1,196,256 + ABIE51_RS05530 0.87 -1.0 1,196,256 + ABIE51_RS05530 0.87 -0.0 1,196,256 + ABIE51_RS05530 0.87 +1.0 1,196,433 + -0.2 1,197,031 + -1.0 1,197,032 - -0.9 1,197,032 - -0.1 1,197,032 - -0.3 1,197,032 - -1.3 1,197,062 + ABIE51_RS05540 0.12 -2.3 1,197,062 + ABIE51_RS05540 0.12 -3.5 1,197,063 - ABIE51_RS05540 0.13 -1.4 1,197,612 + ABIE51_RS05545 0.36 +0.0 1,197,612 + ABIE51_RS05545 0.36 -0.1 1,197,612 + ABIE51_RS05545 0.36 +0.4 1,197,613 - ABIE51_RS05545 0.36 -0.4 1,197,613 - ABIE51_RS05545 0.36 +0.1 1,197,805 - ABIE51_RS05545 0.74 +0.5 1,198,385 + ABIE51_RS05550 0.89 +0.5
Or see this region's nucleotide sequence