Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS05275

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS05265 and ABIE51_RS05270 are separated by 90 nucleotidesABIE51_RS05270 and ABIE51_RS05275 overlap by 4 nucleotidesABIE51_RS05275 and ABIE51_RS05280 are separated by 51 nucleotidesABIE51_RS05280 and ABIE51_RS05285 are separated by 35 nucleotides ABIE51_RS05265: ABIE51_RS05265 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,144,502 to 1,145,911 _RS05265 ABIE51_RS05270: ABIE51_RS05270 - ADP compounds hydrolase NudE, at 1,146,002 to 1,146,553 _RS05270 ABIE51_RS05275: ABIE51_RS05275 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 1,146,550 to 1,147,362 _RS05275 ABIE51_RS05280: ABIE51_RS05280 - nucleoside triphosphate pyrophosphohydrolase, at 1,147,414 to 1,148,277 _RS05280 ABIE51_RS05285: ABIE51_RS05285 - DUF962 domain-containing protein, at 1,148,313 to 1,148,615 _RS05285 Position (kb) 1146 1147 1148Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1145.846 kb on + strandat 1145.846 kb on + strandat 1145.846 kb on + strandat 1145.847 kb on - strandat 1145.897 kb on + strandat 1145.897 kb on + strandat 1145.897 kb on + strandat 1145.898 kb on - strandat 1145.932 kb on - strandat 1146.108 kb on - strand, within ABIE51_RS05270at 1146.192 kb on - strand, within ABIE51_RS05270at 1146.299 kb on + strand, within ABIE51_RS05270at 1146.350 kb on + strand, within ABIE51_RS05270at 1146.350 kb on + strand, within ABIE51_RS05270at 1146.350 kb on + strand, within ABIE51_RS05270at 1146.350 kb on + strand, within ABIE51_RS05270at 1146.350 kb on + strand, within ABIE51_RS05270at 1146.350 kb on + strand, within ABIE51_RS05270at 1146.350 kb on + strand, within ABIE51_RS05270at 1146.350 kb on + strand, within ABIE51_RS05270at 1146.350 kb on + strand, within ABIE51_RS05270at 1146.351 kb on - strand, within ABIE51_RS05270at 1146.351 kb on - strand, within ABIE51_RS05270at 1146.351 kb on - strand, within ABIE51_RS05270at 1146.351 kb on - strand, within ABIE51_RS05270at 1146.351 kb on - strand, within ABIE51_RS05270at 1146.563 kb on + strandat 1146.563 kb on + strandat 1146.563 kb on + strandat 1146.563 kb on + strandat 1146.564 kb on - strandat 1146.564 kb on - strandat 1146.637 kb on + strand, within ABIE51_RS05275at 1146.637 kb on + strand, within ABIE51_RS05275at 1146.638 kb on - strand, within ABIE51_RS05275at 1146.638 kb on - strand, within ABIE51_RS05275at 1146.638 kb on - strand, within ABIE51_RS05275at 1146.638 kb on - strand, within ABIE51_RS05275at 1147.360 kb on + strandat 1147.361 kb on - strandat 1147.585 kb on + strand, within ABIE51_RS05280at 1147.585 kb on + strand, within ABIE51_RS05280at 1147.586 kb on - strand, within ABIE51_RS05280at 1147.586 kb on - strand, within ABIE51_RS05280at 1147.586 kb on - strand, within ABIE51_RS05280at 1147.586 kb on - strand, within ABIE51_RS05280at 1147.586 kb on - strand, within ABIE51_RS05280at 1147.586 kb on - strand, within ABIE51_RS05280at 1147.846 kb on - strand, within ABIE51_RS05280at 1148.343 kb on + strandat 1148.352 kb on + strand, within ABIE51_RS05285at 1148.352 kb on + strand, within ABIE51_RS05285at 1148.353 kb on - strand, within ABIE51_RS05285at 1148.353 kb on - strand, within ABIE51_RS05285at 1148.353 kb on - strand, within ABIE51_RS05285

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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1,145,846 + -0.3
1,145,846 + -0.6
1,145,846 + +0.0
1,145,847 - +0.0
1,145,897 + -0.5
1,145,897 + +1.2
1,145,897 + -0.6
1,145,898 - +0.3
1,145,932 - +0.9
1,146,108 - ABIE51_RS05270 0.19 -0.3
1,146,192 - ABIE51_RS05270 0.34 -0.0
1,146,299 + ABIE51_RS05270 0.54 -0.2
1,146,350 + ABIE51_RS05270 0.63 +0.0
1,146,350 + ABIE51_RS05270 0.63 -0.4
1,146,350 + ABIE51_RS05270 0.63 +0.1
1,146,350 + ABIE51_RS05270 0.63 -0.8
1,146,350 + ABIE51_RS05270 0.63 +0.8
1,146,350 + ABIE51_RS05270 0.63 -0.1
1,146,350 + ABIE51_RS05270 0.63 -0.2
1,146,350 + ABIE51_RS05270 0.63 -0.4
1,146,350 + ABIE51_RS05270 0.63 -0.2
1,146,351 - ABIE51_RS05270 0.63 -0.6
1,146,351 - ABIE51_RS05270 0.63 -1.6
1,146,351 - ABIE51_RS05270 0.63 -0.3
1,146,351 - ABIE51_RS05270 0.63 -0.4
1,146,351 - ABIE51_RS05270 0.63 +0.1
1,146,563 + -0.1
1,146,563 + -0.2
1,146,563 + +0.0
1,146,563 + -2.1
1,146,564 - +1.5
1,146,564 - +0.1
1,146,637 + ABIE51_RS05275 0.11 -3.3
1,146,637 + ABIE51_RS05275 0.11 -2.8
1,146,638 - ABIE51_RS05275 0.11 -1.8
1,146,638 - ABIE51_RS05275 0.11 -2.9
1,146,638 - ABIE51_RS05275 0.11 -4.0
1,146,638 - ABIE51_RS05275 0.11 -3.6
1,147,360 + -0.6
1,147,361 - -0.4
1,147,585 + ABIE51_RS05280 0.20 -0.3
1,147,585 + ABIE51_RS05280 0.20 -0.4
1,147,586 - ABIE51_RS05280 0.20 +1.0
1,147,586 - ABIE51_RS05280 0.20 +1.1
1,147,586 - ABIE51_RS05280 0.20 +0.4
1,147,586 - ABIE51_RS05280 0.20 -0.0
1,147,586 - ABIE51_RS05280 0.20 +0.5
1,147,586 - ABIE51_RS05280 0.20 -0.1
1,147,846 - ABIE51_RS05280 0.50 +0.5
1,148,343 + -0.0
1,148,352 + ABIE51_RS05285 0.13 -0.1
1,148,352 + ABIE51_RS05285 0.13 +0.2
1,148,353 - ABIE51_RS05285 0.13 -0.1
1,148,353 - ABIE51_RS05285 0.13 -1.7
1,148,353 - ABIE51_RS05285 0.13 +0.6

Or see this region's nucleotide sequence