Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS01855

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS01850 and ABIE51_RS01855 are separated by 221 nucleotidesABIE51_RS01855 and ABIE51_RS01860 are separated by 27 nucleotides ABIE51_RS01850: ABIE51_RS01850 - sulfate ABC transporter permease subunit CysT, at 410,461 to 411,330 _RS01850 ABIE51_RS01855: ABIE51_RS01855 - sulfate ABC transporter substrate-binding protein, at 411,552 to 412,562 _RS01855 ABIE51_RS01860: ABIE51_RS01860 - porin, at 412,590 to 414,050 _RS01860 Position (kb) 411 412 413Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 410.636 kb on + strand, within ABIE51_RS01850at 410.637 kb on - strand, within ABIE51_RS01850at 410.672 kb on + strand, within ABIE51_RS01850at 410.673 kb on - strand, within ABIE51_RS01850at 410.894 kb on + strand, within ABIE51_RS01850at 410.894 kb on + strand, within ABIE51_RS01850at 410.894 kb on + strand, within ABIE51_RS01850at 410.894 kb on + strand, within ABIE51_RS01850at 410.894 kb on + strand, within ABIE51_RS01850at 410.895 kb on - strand, within ABIE51_RS01850at 410.895 kb on - strand, within ABIE51_RS01850at 410.926 kb on - strand, within ABIE51_RS01850at 410.951 kb on + strand, within ABIE51_RS01850at 410.952 kb on - strand, within ABIE51_RS01850at 410.952 kb on - strand, within ABIE51_RS01850at 411.339 kb on - strandat 411.345 kb on + strandat 411.345 kb on + strandat 411.345 kb on + strandat 411.345 kb on + strandat 411.345 kb on + strandat 411.346 kb on - strandat 411.367 kb on + strandat 411.367 kb on + strandat 411.368 kb on - strandat 411.368 kb on - strandat 411.510 kb on + strandat 411.511 kb on - strandat 411.511 kb on - strandat 411.511 kb on - strandat 411.511 kb on - strandat 411.511 kb on - strandat 411.511 kb on - strandat 411.565 kb on + strandat 411.565 kb on + strandat 411.712 kb on + strand, within ABIE51_RS01855at 411.752 kb on - strand, within ABIE51_RS01855at 411.752 kb on - strand, within ABIE51_RS01855at 411.757 kb on + strand, within ABIE51_RS01855at 411.766 kb on + strand, within ABIE51_RS01855at 411.766 kb on + strand, within ABIE51_RS01855at 411.767 kb on - strand, within ABIE51_RS01855at 412.021 kb on + strand, within ABIE51_RS01855at 412.081 kb on + strand, within ABIE51_RS01855at 412.081 kb on + strand, within ABIE51_RS01855at 412.082 kb on - strand, within ABIE51_RS01855at 412.082 kb on - strand, within ABIE51_RS01855at 412.082 kb on - strand, within ABIE51_RS01855at 412.213 kb on + strand, within ABIE51_RS01855at 412.444 kb on + strand, within ABIE51_RS01855at 412.465 kb on + strandat 412.466 kb on - strandat 412.466 kb on - strandat 412.681 kb on + strandat 412.682 kb on - strandat 412.714 kb on + strandat 412.813 kb on + strand, within ABIE51_RS01860at 412.814 kb on - strand, within ABIE51_RS01860at 412.814 kb on - strand, within ABIE51_RS01860at 412.871 kb on + strand, within ABIE51_RS01860at 412.871 kb on + strand, within ABIE51_RS01860at 412.872 kb on - strand, within ABIE51_RS01860at 412.918 kb on + strand, within ABIE51_RS01860at 413.005 kb on + strand, within ABIE51_RS01860at 413.006 kb on - strand, within ABIE51_RS01860at 413.035 kb on + strand, within ABIE51_RS01860at 413.038 kb on + strand, within ABIE51_RS01860at 413.038 kb on + strand, within ABIE51_RS01860at 413.038 kb on + strand, within ABIE51_RS01860at 413.039 kb on - strand, within ABIE51_RS01860at 413.039 kb on - strand, within ABIE51_RS01860at 413.041 kb on + strand, within ABIE51_RS01860at 413.041 kb on + strand, within ABIE51_RS01860at 413.042 kb on - strand, within ABIE51_RS01860at 413.042 kb on - strand, within ABIE51_RS01860at 413.042 kb on - strand, within ABIE51_RS01860at 413.096 kb on - strand, within ABIE51_RS01860at 413.096 kb on - strand, within ABIE51_RS01860at 413.096 kb on - strand, within ABIE51_RS01860at 413.311 kb on + strand, within ABIE51_RS01860at 413.311 kb on + strand, within ABIE51_RS01860at 413.311 kb on + strand, within ABIE51_RS01860at 413.312 kb on - strand, within ABIE51_RS01860at 413.312 kb on - strand, within ABIE51_RS01860at 413.312 kb on - strand, within ABIE51_RS01860at 413.312 kb on - strand, within ABIE51_RS01860at 413.326 kb on + strand, within ABIE51_RS01860at 413.326 kb on + strand, within ABIE51_RS01860at 413.327 kb on - strand, within ABIE51_RS01860at 413.327 kb on - strand, within ABIE51_RS01860

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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410,636 + ABIE51_RS01850 0.20 -2.8
410,637 - ABIE51_RS01850 0.20 -3.2
410,672 + ABIE51_RS01850 0.24 -4.2
410,673 - ABIE51_RS01850 0.24 -3.7
410,894 + ABIE51_RS01850 0.50 -2.4
410,894 + ABIE51_RS01850 0.50 -1.6
410,894 + ABIE51_RS01850 0.50 -5.0
410,894 + ABIE51_RS01850 0.50 -2.7
410,894 + ABIE51_RS01850 0.50 -2.3
410,895 - ABIE51_RS01850 0.50 -2.2
410,895 - ABIE51_RS01850 0.50 -3.1
410,926 - ABIE51_RS01850 0.53 -2.0
410,951 + ABIE51_RS01850 0.56 -3.7
410,952 - ABIE51_RS01850 0.56 -2.9
410,952 - ABIE51_RS01850 0.56 -2.2
411,339 - +1.0
411,345 + -0.8
411,345 + -0.5
411,345 + -0.3
411,345 + -0.0
411,345 + -0.3
411,346 - +0.8
411,367 + -0.4
411,367 + -1.1
411,368 - +0.9
411,368 - +1.1
411,510 + -1.2
411,511 - +1.1
411,511 - +1.2
411,511 - +2.2
411,511 - +0.9
411,511 - +1.1
411,511 - +1.0
411,565 + -2.2
411,565 + -3.1
411,712 + ABIE51_RS01855 0.16 -2.8
411,752 - ABIE51_RS01855 0.20 -3.1
411,752 - ABIE51_RS01855 0.20 -2.5
411,757 + ABIE51_RS01855 0.20 -3.6
411,766 + ABIE51_RS01855 0.21 -4.4
411,766 + ABIE51_RS01855 0.21 -3.5
411,767 - ABIE51_RS01855 0.21 -1.1
412,021 + ABIE51_RS01855 0.46 -3.0
412,081 + ABIE51_RS01855 0.52 -1.5
412,081 + ABIE51_RS01855 0.52 -4.1
412,082 - ABIE51_RS01855 0.52 -3.8
412,082 - ABIE51_RS01855 0.52 -4.0
412,082 - ABIE51_RS01855 0.52 -3.5
412,213 + ABIE51_RS01855 0.65 -2.3
412,444 + ABIE51_RS01855 0.88 -2.0
412,465 + -4.1
412,466 - -3.6
412,466 - -3.5
412,681 + -2.3
412,682 - +1.0
412,714 + -3.4
412,813 + ABIE51_RS01860 0.15 -4.4
412,814 - ABIE51_RS01860 0.15 +0.4
412,814 - ABIE51_RS01860 0.15 +0.2
412,871 + ABIE51_RS01860 0.19 -0.8
412,871 + ABIE51_RS01860 0.19 -1.6
412,872 - ABIE51_RS01860 0.19 +0.5
412,918 + ABIE51_RS01860 0.22 -2.2
413,005 + ABIE51_RS01860 0.28 -2.3
413,006 - ABIE51_RS01860 0.28 +0.1
413,035 + ABIE51_RS01860 0.30 -0.6
413,038 + ABIE51_RS01860 0.31 -3.0
413,038 + ABIE51_RS01860 0.31 -2.8
413,038 + ABIE51_RS01860 0.31 -1.6
413,039 - ABIE51_RS01860 0.31 +0.3
413,039 - ABIE51_RS01860 0.31 +0.5
413,041 + ABIE51_RS01860 0.31 -1.2
413,041 + ABIE51_RS01860 0.31 -1.9
413,042 - ABIE51_RS01860 0.31 +1.4
413,042 - ABIE51_RS01860 0.31 +0.5
413,042 - ABIE51_RS01860 0.31 +0.5
413,096 - ABIE51_RS01860 0.35 -0.1
413,096 - ABIE51_RS01860 0.35 -0.1
413,096 - ABIE51_RS01860 0.35 +0.0
413,311 + ABIE51_RS01860 0.49 -2.2
413,311 + ABIE51_RS01860 0.49 -1.2
413,311 + ABIE51_RS01860 0.49 -3.2
413,312 - ABIE51_RS01860 0.49 -1.4
413,312 - ABIE51_RS01860 0.49 -0.4
413,312 - ABIE51_RS01860 0.49 -1.9
413,312 - ABIE51_RS01860 0.49 -1.8
413,326 + ABIE51_RS01860 0.50 -3.1
413,326 + ABIE51_RS01860 0.50 -3.4
413,327 - ABIE51_RS01860 0.50 -0.7
413,327 - ABIE51_RS01860 0.50 +0.3

Or see this region's nucleotide sequence