Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS01630

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS01625 and ABIE51_RS01630 are separated by 49 nucleotidesABIE51_RS01630 and ABIE51_RS01635 are separated by 8 nucleotides ABIE51_RS01625: ABIE51_RS01625 - GntR family transcriptional regulator, at 357,006 to 357,749 _RS01625 ABIE51_RS01630: ABIE51_RS01630 - SIS domain-containing protein, at 357,799 to 358,809 _RS01630 ABIE51_RS01635: ABIE51_RS01635 - N-acetylglucosamine-6-phosphate deacetylase, at 358,818 to 359,951 _RS01635 Position (kb) 357 358 359Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 356.867 kb on + strandat 356.868 kb on - strandat 356.928 kb on + strandat 356.929 kb on - strandat 356.983 kb on + strandat 356.984 kb on - strandat 356.994 kb on + strandat 356.995 kb on - strandat 356.995 kb on - strandat 357.015 kb on + strandat 357.015 kb on + strandat 357.015 kb on + strandat 357.015 kb on + strandat 357.015 kb on + strandat 357.015 kb on + strandat 357.015 kb on + strandat 357.015 kb on + strandat 357.016 kb on - strandat 357.016 kb on - strandat 357.016 kb on - strandat 357.016 kb on - strandat 357.016 kb on - strandat 357.066 kb on + strandat 357.067 kb on - strandat 357.420 kb on + strand, within ABIE51_RS01625at 357.420 kb on + strand, within ABIE51_RS01625at 357.420 kb on + strand, within ABIE51_RS01625at 357.420 kb on + strand, within ABIE51_RS01625at 357.420 kb on + strand, within ABIE51_RS01625at 357.421 kb on - strand, within ABIE51_RS01625at 357.421 kb on - strand, within ABIE51_RS01625at 357.421 kb on - strand, within ABIE51_RS01625at 357.421 kb on - strand, within ABIE51_RS01625at 357.423 kb on + strand, within ABIE51_RS01625at 357.424 kb on - strand, within ABIE51_RS01625at 357.424 kb on - strand, within ABIE51_RS01625at 357.522 kb on + strand, within ABIE51_RS01625at 357.687 kb on + strandat 357.687 kb on + strandat 357.687 kb on + strandat 357.688 kb on - strandat 357.688 kb on - strandat 357.718 kb on - strandat 357.718 kb on - strandat 357.747 kb on + strandat 357.748 kb on - strandat 357.748 kb on - strandat 357.748 kb on - strandat 357.953 kb on - strand, within ABIE51_RS01630at 357.961 kb on + strand, within ABIE51_RS01630at 357.961 kb on + strand, within ABIE51_RS01630at 357.961 kb on + strand, within ABIE51_RS01630at 357.962 kb on - strand, within ABIE51_RS01630at 357.962 kb on - strand, within ABIE51_RS01630at 357.962 kb on - strand, within ABIE51_RS01630at 358.024 kb on + strand, within ABIE51_RS01630at 358.025 kb on - strand, within ABIE51_RS01630at 358.240 kb on + strand, within ABIE51_RS01630at 358.240 kb on + strand, within ABIE51_RS01630at 358.240 kb on + strand, within ABIE51_RS01630at 358.240 kb on + strand, within ABIE51_RS01630at 358.240 kb on + strand, within ABIE51_RS01630at 358.241 kb on - strand, within ABIE51_RS01630at 358.241 kb on - strand, within ABIE51_RS01630at 358.241 kb on - strand, within ABIE51_RS01630at 358.241 kb on - strand, within ABIE51_RS01630at 358.241 kb on - strand, within ABIE51_RS01630at 358.723 kb on + strandat 358.723 kb on + strandat 358.723 kb on + strandat 358.723 kb on + strandat 358.724 kb on - strandat 358.724 kb on - strandat 358.968 kb on + strand, within ABIE51_RS01635at 358.969 kb on - strand, within ABIE51_RS01635at 358.969 kb on - strand, within ABIE51_RS01635at 359.079 kb on + strand, within ABIE51_RS01635at 359.079 kb on + strand, within ABIE51_RS01635at 359.079 kb on + strand, within ABIE51_RS01635at 359.080 kb on - strand, within ABIE51_RS01635at 359.212 kb on - strand, within ABIE51_RS01635at 359.399 kb on + strand, within ABIE51_RS01635at 359.399 kb on + strand, within ABIE51_RS01635at 359.400 kb on - strand, within ABIE51_RS01635at 359.412 kb on + strand, within ABIE51_RS01635at 359.412 kb on + strand, within ABIE51_RS01635at 359.412 kb on + strand, within ABIE51_RS01635at 359.412 kb on + strand, within ABIE51_RS01635at 359.412 kb on + strand, within ABIE51_RS01635at 359.413 kb on - strand, within ABIE51_RS01635at 359.413 kb on - strand, within ABIE51_RS01635at 359.413 kb on - strand, within ABIE51_RS01635at 359.562 kb on + strand, within ABIE51_RS01635at 359.679 kb on + strand, within ABIE51_RS01635at 359.679 kb on + strand, within ABIE51_RS01635at 359.679 kb on + strand, within ABIE51_RS01635at 359.680 kb on - strand, within ABIE51_RS01635

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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356,867 + -1.1
356,868 - -0.4
356,928 + -0.0
356,929 - +0.1
356,983 + +0.3
356,984 - -0.4
356,994 + +0.0
356,995 - -0.2
356,995 - -0.2
357,015 + -0.6
357,015 + -2.9
357,015 + -2.1
357,015 + -3.3
357,015 + -0.3
357,015 + -2.5
357,015 + -1.9
357,015 + +0.2
357,016 - -2.0
357,016 - -4.3
357,016 - -4.3
357,016 - -3.6
357,016 - -3.4
357,066 + -0.2
357,067 - -1.9
357,420 + ABIE51_RS01625 0.56 +0.3
357,420 + ABIE51_RS01625 0.56 -0.1
357,420 + ABIE51_RS01625 0.56 +0.7
357,420 + ABIE51_RS01625 0.56 +0.4
357,420 + ABIE51_RS01625 0.56 +0.9
357,421 - ABIE51_RS01625 0.56 -0.6
357,421 - ABIE51_RS01625 0.56 -4.2
357,421 - ABIE51_RS01625 0.56 -1.9
357,421 - ABIE51_RS01625 0.56 -3.5
357,423 + ABIE51_RS01625 0.56 +0.1
357,424 - ABIE51_RS01625 0.56 -3.4
357,424 - ABIE51_RS01625 0.56 -2.2
357,522 + ABIE51_RS01625 0.69 -0.0
357,687 + +0.8
357,687 + +0.1
357,687 + +0.2
357,688 - -0.7
357,688 - -2.8
357,718 - -2.2
357,718 - -3.2
357,747 + -2.6
357,748 - -3.9
357,748 - -2.6
357,748 - -3.8
357,953 - ABIE51_RS01630 0.15 -1.9
357,961 + ABIE51_RS01630 0.16 -0.6
357,961 + ABIE51_RS01630 0.16 -3.1
357,961 + ABIE51_RS01630 0.16 -3.1
357,962 - ABIE51_RS01630 0.16 -3.4
357,962 - ABIE51_RS01630 0.16 -3.1
357,962 - ABIE51_RS01630 0.16 -2.6
358,024 + ABIE51_RS01630 0.22 -3.1
358,025 - ABIE51_RS01630 0.22 -3.7
358,240 + ABIE51_RS01630 0.44 -1.3
358,240 + ABIE51_RS01630 0.44 -3.0
358,240 + ABIE51_RS01630 0.44 -3.4
358,240 + ABIE51_RS01630 0.44 -2.7
358,240 + ABIE51_RS01630 0.44 -0.9
358,241 - ABIE51_RS01630 0.44 -4.0
358,241 - ABIE51_RS01630 0.44 -3.2
358,241 - ABIE51_RS01630 0.44 -0.4
358,241 - ABIE51_RS01630 0.44 -2.8
358,241 - ABIE51_RS01630 0.44 -3.2
358,723 + -3.5
358,723 + -2.8
358,723 + -3.2
358,723 + -3.0
358,724 - -1.0
358,724 - -3.4
358,968 + ABIE51_RS01635 0.13 +0.1
358,969 - ABIE51_RS01635 0.13 -1.3
358,969 - ABIE51_RS01635 0.13 -1.6
359,079 + ABIE51_RS01635 0.23 -1.9
359,079 + ABIE51_RS01635 0.23 -0.5
359,079 + ABIE51_RS01635 0.23 -2.5
359,080 - ABIE51_RS01635 0.23 -1.7
359,212 - ABIE51_RS01635 0.35 -0.9
359,399 + ABIE51_RS01635 0.51 -1.7
359,399 + ABIE51_RS01635 0.51 -1.9
359,400 - ABIE51_RS01635 0.51 -1.9
359,412 + ABIE51_RS01635 0.52 -1.7
359,412 + ABIE51_RS01635 0.52 -1.8
359,412 + ABIE51_RS01635 0.52 -1.3
359,412 + ABIE51_RS01635 0.52 -2.0
359,412 + ABIE51_RS01635 0.52 -3.4
359,413 - ABIE51_RS01635 0.52 -3.9
359,413 - ABIE51_RS01635 0.52 -2.2
359,413 - ABIE51_RS01635 0.52 -2.1
359,562 + ABIE51_RS01635 0.66 -1.9
359,679 + ABIE51_RS01635 0.76 -0.9
359,679 + ABIE51_RS01635 0.76 -1.6
359,679 + ABIE51_RS01635 0.76 -3.6
359,680 - ABIE51_RS01635 0.76 -2.9

Or see this region's nucleotide sequence