Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00630 and ABIE51_RS00635 are separated by 232 nucleotides ABIE51_RS00635 and ABIE51_RS00640 are separated by 91 nucleotides ABIE51_RS00640 and ABIE51_RS00645 are separated by 133 nucleotides
ABIE51_RS00630: ABIE51_RS00630 - aldo/keto reductase, at 130,796 to 131,749
_RS00630
ABIE51_RS00635: ABIE51_RS00635 - hybrid sensor histidine kinase/response regulator, at 131,982 to 133,091
_RS00635
ABIE51_RS00640: ABIE51_RS00640 - hypothetical protein, at 133,183 to 133,590
_RS00640
ABIE51_RS00645: ABIE51_RS00645 - Fe2+-dependent dioxygenase, at 133,724 to 134,389
_RS00645
Position (kb) 131
132
133
134 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 131.025 kb on + strand, within ABIE51_RS00630 at 131.025 kb on + strand, within ABIE51_RS00630 at 131.026 kb on - strand, within ABIE51_RS00630 at 131.026 kb on - strand, within ABIE51_RS00630 at 131.082 kb on + strand, within ABIE51_RS00630 at 131.082 kb on + strand, within ABIE51_RS00630 at 131.082 kb on + strand, within ABIE51_RS00630 at 131.083 kb on - strand, within ABIE51_RS00630 at 131.083 kb on - strand, within ABIE51_RS00630 at 131.115 kb on + strand, within ABIE51_RS00630 at 131.115 kb on + strand, within ABIE51_RS00630 at 131.115 kb on + strand, within ABIE51_RS00630 at 131.116 kb on - strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.119 kb on - strand, within ABIE51_RS00630 at 131.119 kb on - strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.188 kb on - strand, within ABIE51_RS00630 at 131.188 kb on - strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.277 kb on + strand, within ABIE51_RS00630 at 131.277 kb on + strand, within ABIE51_RS00630 at 131.278 kb on - strand, within ABIE51_RS00630 at 131.382 kb on + strand, within ABIE51_RS00630 at 131.382 kb on + strand, within ABIE51_RS00630 at 131.383 kb on - strand, within ABIE51_RS00630 at 131.383 kb on - strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.581 kb on - strand, within ABIE51_RS00630 at 131.768 kb on + strand at 131.768 kb on + strand at 131.768 kb on + strand at 131.769 kb on - strand at 131.769 kb on - strand at 131.796 kb on - strand at 131.796 kb on - strand at 131.820 kb on - strand at 131.820 kb on - strand at 131.820 kb on - strand at 131.915 kb on + strand at 131.915 kb on + strand at 131.990 kb on - strand at 132.078 kb on + strand at 132.078 kb on + strand at 132.123 kb on + strand, within ABIE51_RS00635 at 132.123 kb on + strand, within ABIE51_RS00635 at 132.124 kb on - strand, within ABIE51_RS00635 at 132.129 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.558 kb on + strand, within ABIE51_RS00635 at 132.558 kb on + strand, within ABIE51_RS00635 at 132.558 kb on + strand, within ABIE51_RS00635 at 132.559 kb on - strand, within ABIE51_RS00635 at 132.570 kb on + strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.664 kb on - strand, within ABIE51_RS00635 at 132.792 kb on + strand, within ABIE51_RS00635 at 132.792 kb on + strand, within ABIE51_RS00635 at 132.792 kb on + strand, within ABIE51_RS00635 at 132.792 kb on + strand, within ABIE51_RS00635 at 132.793 kb on - strand, within ABIE51_RS00635 at 132.942 kb on + strand, within ABIE51_RS00635 at 133.017 kb on + strand at 133.018 kb on - strand at 133.176 kb on + strand at 133.343 kb on + strand, within ABIE51_RS00640 at 133.344 kb on - strand, within ABIE51_RS00640 at 133.344 kb on - strand, within ABIE51_RS00640 at 133.442 kb on - strand, within ABIE51_RS00640 at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.595 kb on + strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.596 kb on - strand at 133.976 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.994 kb on + strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 133.995 kb on - strand, within ABIE51_RS00645 at 134.087 kb on + strand, within ABIE51_RS00645
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 131,025 + ABIE51_RS00630 0.24 +0.2 131,025 + ABIE51_RS00630 0.24 +0.1 131,026 - ABIE51_RS00630 0.24 -0.4 131,026 - ABIE51_RS00630 0.24 -0.3 131,082 + ABIE51_RS00630 0.30 +0.0 131,082 + ABIE51_RS00630 0.30 +0.1 131,082 + ABIE51_RS00630 0.30 +0.2 131,083 - ABIE51_RS00630 0.30 -0.6 131,083 - ABIE51_RS00630 0.30 +0.6 131,115 + ABIE51_RS00630 0.33 -0.9 131,115 + ABIE51_RS00630 0.33 -0.6 131,115 + ABIE51_RS00630 0.33 +0.3 131,116 - ABIE51_RS00630 0.34 -0.3 131,118 + ABIE51_RS00630 0.34 -0.2 131,118 + ABIE51_RS00630 0.34 +0.0 131,118 + ABIE51_RS00630 0.34 -1.3 131,118 + ABIE51_RS00630 0.34 -0.5 131,119 - ABIE51_RS00630 0.34 -0.5 131,119 - ABIE51_RS00630 0.34 +0.0 131,187 + ABIE51_RS00630 0.41 -0.5 131,187 + ABIE51_RS00630 0.41 +0.7 131,187 + ABIE51_RS00630 0.41 -0.4 131,187 + ABIE51_RS00630 0.41 -0.1 131,188 - ABIE51_RS00630 0.41 +1.3 131,188 - ABIE51_RS00630 0.41 -0.3 131,196 + ABIE51_RS00630 0.42 +0.5 131,196 + ABIE51_RS00630 0.42 -0.7 131,196 + ABIE51_RS00630 0.42 -1.1 131,196 + ABIE51_RS00630 0.42 -0.3 131,196 + ABIE51_RS00630 0.42 +0.2 131,197 - ABIE51_RS00630 0.42 -0.2 131,197 - ABIE51_RS00630 0.42 -0.3 131,197 - ABIE51_RS00630 0.42 -0.5 131,197 - ABIE51_RS00630 0.42 -0.2 131,197 - ABIE51_RS00630 0.42 -1.9 131,277 + ABIE51_RS00630 0.50 +0.1 131,277 + ABIE51_RS00630 0.50 -1.3 131,278 - ABIE51_RS00630 0.51 -1.0 131,382 + ABIE51_RS00630 0.61 -0.0 131,382 + ABIE51_RS00630 0.61 -0.9 131,383 - ABIE51_RS00630 0.62 -0.3 131,383 - ABIE51_RS00630 0.62 -0.5 131,580 + ABIE51_RS00630 0.82 -0.1 131,580 + ABIE51_RS00630 0.82 -0.6 131,580 + ABIE51_RS00630 0.82 -0.4 131,580 + ABIE51_RS00630 0.82 +0.1 131,580 + ABIE51_RS00630 0.82 -0.6 131,581 - ABIE51_RS00630 0.82 -0.5 131,768 + -0.4 131,768 + -1.7 131,768 + -0.9 131,769 - -0.7 131,769 - -0.2 131,796 - -0.3 131,796 - +0.1 131,820 - +0.7 131,820 - +0.7 131,820 - +0.4 131,915 + -2.4 131,915 + -1.1 131,990 - +0.7 132,078 + -0.6 132,078 + -0.5 132,123 + ABIE51_RS00635 0.13 -1.9 132,123 + ABIE51_RS00635 0.13 -0.3 132,124 - ABIE51_RS00635 0.13 +0.1 132,129 + ABIE51_RS00635 0.13 +0.1 132,300 + ABIE51_RS00635 0.29 -3.0 132,300 + ABIE51_RS00635 0.29 -1.3 132,300 + ABIE51_RS00635 0.29 -2.9 132,300 + ABIE51_RS00635 0.29 -1.6 132,301 - ABIE51_RS00635 0.29 +0.7 132,301 - ABIE51_RS00635 0.29 -2.0 132,301 - ABIE51_RS00635 0.29 +1.7 132,301 - ABIE51_RS00635 0.29 -0.3 132,301 - ABIE51_RS00635 0.29 -2.3 132,301 - ABIE51_RS00635 0.29 -1.6 132,558 + ABIE51_RS00635 0.52 +0.7 132,558 + ABIE51_RS00635 0.52 -0.9 132,558 + ABIE51_RS00635 0.52 -1.3 132,559 - ABIE51_RS00635 0.52 -2.5 132,570 + ABIE51_RS00635 0.53 +0.7 132,571 - ABIE51_RS00635 0.53 -0.3 132,571 - ABIE51_RS00635 0.53 +0.1 132,571 - ABIE51_RS00635 0.53 -1.1 132,571 - ABIE51_RS00635 0.53 +0.4 132,571 - ABIE51_RS00635 0.53 -2.6 132,664 - ABIE51_RS00635 0.61 -1.7 132,792 + ABIE51_RS00635 0.73 -2.5 132,792 + ABIE51_RS00635 0.73 -0.6 132,792 + ABIE51_RS00635 0.73 -2.3 132,792 + ABIE51_RS00635 0.73 +1.7 132,793 - ABIE51_RS00635 0.73 -1.6 132,942 + ABIE51_RS00635 0.86 -1.7 133,017 + -2.4 133,018 - +0.7 133,176 + +1.3 133,343 + ABIE51_RS00640 0.39 -0.1 133,344 - ABIE51_RS00640 0.39 -0.3 133,344 - ABIE51_RS00640 0.39 +0.0 133,442 - ABIE51_RS00640 0.63 -0.8 133,595 + +0.3 133,595 + +1.0 133,595 + -0.4 133,595 + +0.3 133,595 + +0.5 133,595 + +0.2 133,595 + -0.0 133,595 + +0.1 133,595 + -0.3 133,595 + +0.4 133,596 - -0.3 133,596 - -0.1 133,596 - -0.2 133,596 - +0.2 133,596 - +0.5 133,596 - +0.6 133,596 - +2.0 133,596 - +0.0 133,596 - +0.6 133,596 - -0.5 133,596 - +0.7 133,596 - +0.0 133,596 - -0.1 133,596 - +0.2 133,596 - +0.5 133,596 - +0.2 133,596 - +0.7 133,976 + ABIE51_RS00645 0.38 -0.5 133,994 + ABIE51_RS00645 0.41 +0.3 133,994 + ABIE51_RS00645 0.41 +0.0 133,994 + ABIE51_RS00645 0.41 -0.3 133,994 + ABIE51_RS00645 0.41 +1.3 133,994 + ABIE51_RS00645 0.41 -0.1 133,994 + ABIE51_RS00645 0.41 -0.1 133,994 + ABIE51_RS00645 0.41 -0.3 133,994 + ABIE51_RS00645 0.41 +0.9 133,995 - ABIE51_RS00645 0.41 +0.4 133,995 - ABIE51_RS00645 0.41 -0.1 133,995 - ABIE51_RS00645 0.41 +0.0 133,995 - ABIE51_RS00645 0.41 -0.0 133,995 - ABIE51_RS00645 0.41 -0.2 133,995 - ABIE51_RS00645 0.41 -0.1 134,087 + ABIE51_RS00645 0.55 +0.1
Or see this region's nucleotide sequence