Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01720 and ABIE51_RS01725 are separated by 24 nucleotides ABIE51_RS01725 and ABIE51_RS01730 are separated by 17 nucleotides ABIE51_RS01730 and ABIE51_RS01735 overlap by 4 nucleotides
ABIE51_RS01720: ABIE51_RS01720 - NAD-dependent epimerase/dehydratase family protein, at 385,378 to 386,361
_RS01720
ABIE51_RS01725: ABIE51_RS01725 - hypothetical protein, at 386,386 to 386,811
_RS01725
ABIE51_RS01730: ABIE51_RS01730 - ParB/RepB/Spo0J family partition protein, at 386,829 to 387,737
_RS01730
ABIE51_RS01735: ABIE51_RS01735 - AAA family ATPase, at 387,734 to 388,546
_RS01735
Position (kb) 386
387
388 Strain fitness (log2 ratio) -1
0
1
2 at 385.841 kb on + strand, within ABIE51_RS01720 at 385.854 kb on - strand, within ABIE51_RS01720 at 385.854 kb on - strand, within ABIE51_RS01720 at 385.895 kb on + strand, within ABIE51_RS01720 at 385.896 kb on - strand, within ABIE51_RS01720 at 386.054 kb on + strand, within ABIE51_RS01720 at 386.055 kb on - strand, within ABIE51_RS01720 at 386.055 kb on - strand, within ABIE51_RS01720 at 386.234 kb on + strand, within ABIE51_RS01720 at 386.234 kb on + strand, within ABIE51_RS01720 at 386.234 kb on + strand, within ABIE51_RS01720 at 386.234 kb on + strand, within ABIE51_RS01720 at 386.234 kb on + strand, within ABIE51_RS01720 at 386.234 kb on + strand, within ABIE51_RS01720 at 386.235 kb on - strand, within ABIE51_RS01720 at 386.235 kb on - strand, within ABIE51_RS01720 at 386.235 kb on - strand, within ABIE51_RS01720 at 386.238 kb on - strand, within ABIE51_RS01720 at 386.238 kb on - strand, within ABIE51_RS01720 at 386.300 kb on + strand at 386.300 kb on + strand at 386.300 kb on + strand at 386.301 kb on - strand at 386.301 kb on - strand at 386.528 kb on + strand, within ABIE51_RS01725 at 386.528 kb on + strand, within ABIE51_RS01725 at 386.528 kb on + strand, within ABIE51_RS01725 at 386.528 kb on + strand, within ABIE51_RS01725 at 386.529 kb on - strand, within ABIE51_RS01725 at 386.529 kb on - strand, within ABIE51_RS01725 at 386.529 kb on - strand, within ABIE51_RS01725 at 386.529 kb on - strand, within ABIE51_RS01725 at 386.529 kb on - strand, within ABIE51_RS01725 at 386.529 kb on - strand, within ABIE51_RS01725 at 386.529 kb on - strand, within ABIE51_RS01725 at 386.529 kb on - strand, within ABIE51_RS01725 at 386.529 kb on - strand, within ABIE51_RS01725 at 386.585 kb on + strand, within ABIE51_RS01725 at 386.585 kb on + strand, within ABIE51_RS01725 at 386.586 kb on - strand, within ABIE51_RS01725 at 386.586 kb on - strand, within ABIE51_RS01725 at 386.586 kb on - strand, within ABIE51_RS01725 at 386.586 kb on - strand, within ABIE51_RS01725 at 386.639 kb on + strand, within ABIE51_RS01725 at 386.640 kb on - strand, within ABIE51_RS01725 at 386.640 kb on - strand, within ABIE51_RS01725 at 386.640 kb on - strand, within ABIE51_RS01725 at 386.640 kb on - strand, within ABIE51_RS01725 at 386.645 kb on + strand, within ABIE51_RS01725 at 386.645 kb on + strand, within ABIE51_RS01725 at 386.645 kb on + strand, within ABIE51_RS01725 at 386.645 kb on + strand, within ABIE51_RS01725 at 386.646 kb on - strand, within ABIE51_RS01725 at 386.646 kb on - strand, within ABIE51_RS01725 at 386.657 kb on + strand, within ABIE51_RS01725 at 386.802 kb on - strand at 386.890 kb on + strand at 388.564 kb on - strand at 388.564 kb on - strand at 388.564 kb on - strand at 388.564 kb on - strand at 388.571 kb on - strand at 388.571 kb on - strand at 388.571 kb on - strand at 388.590 kb on + strand at 388.590 kb on + strand at 388.590 kb on + strand at 388.591 kb on - strand at 388.591 kb on - strand at 388.591 kb on - strand at 388.619 kb on + strand at 388.619 kb on + strand at 388.619 kb on + strand at 388.620 kb on - strand at 388.620 kb on - strand at 388.620 kb on - strand at 388.655 kb on + strand at 388.655 kb on + strand at 388.656 kb on - strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.662 kb on - strand at 388.662 kb on - strand at 388.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 385,841 + ABIE51_RS01720 0.47 -0.6 385,854 - ABIE51_RS01720 0.48 -0.6 385,854 - ABIE51_RS01720 0.48 -0.2 385,895 + ABIE51_RS01720 0.53 +0.7 385,896 - ABIE51_RS01720 0.53 -0.5 386,054 + ABIE51_RS01720 0.69 -0.9 386,055 - ABIE51_RS01720 0.69 -0.4 386,055 - ABIE51_RS01720 0.69 -0.3 386,234 + ABIE51_RS01720 0.87 -0.7 386,234 + ABIE51_RS01720 0.87 +0.6 386,234 + ABIE51_RS01720 0.87 -0.4 386,234 + ABIE51_RS01720 0.87 -0.7 386,234 + ABIE51_RS01720 0.87 -1.2 386,234 + ABIE51_RS01720 0.87 -0.6 386,235 - ABIE51_RS01720 0.87 -0.5 386,235 - ABIE51_RS01720 0.87 -0.5 386,235 - ABIE51_RS01720 0.87 -0.6 386,238 - ABIE51_RS01720 0.87 +0.0 386,238 - ABIE51_RS01720 0.87 +0.0 386,300 + -0.8 386,300 + -0.4 386,300 + -0.2 386,301 - -0.5 386,301 - -0.6 386,528 + ABIE51_RS01725 0.33 +0.1 386,528 + ABIE51_RS01725 0.33 +0.1 386,528 + ABIE51_RS01725 0.33 +0.2 386,528 + ABIE51_RS01725 0.33 -0.5 386,529 - ABIE51_RS01725 0.34 -0.7 386,529 - ABIE51_RS01725 0.34 +0.6 386,529 - ABIE51_RS01725 0.34 +0.3 386,529 - ABIE51_RS01725 0.34 -0.2 386,529 - ABIE51_RS01725 0.34 -0.2 386,529 - ABIE51_RS01725 0.34 -0.6 386,529 - ABIE51_RS01725 0.34 -0.1 386,529 - ABIE51_RS01725 0.34 -0.6 386,529 - ABIE51_RS01725 0.34 +0.2 386,585 + ABIE51_RS01725 0.47 -0.1 386,585 + ABIE51_RS01725 0.47 +0.0 386,586 - ABIE51_RS01725 0.47 +0.5 386,586 - ABIE51_RS01725 0.47 -0.2 386,586 - ABIE51_RS01725 0.47 +0.3 386,586 - ABIE51_RS01725 0.47 -0.5 386,639 + ABIE51_RS01725 0.59 +0.7 386,640 - ABIE51_RS01725 0.60 -0.2 386,640 - ABIE51_RS01725 0.60 +0.4 386,640 - ABIE51_RS01725 0.60 +0.8 386,640 - ABIE51_RS01725 0.60 -1.3 386,645 + ABIE51_RS01725 0.61 -0.2 386,645 + ABIE51_RS01725 0.61 -0.9 386,645 + ABIE51_RS01725 0.61 -0.2 386,645 + ABIE51_RS01725 0.61 +1.0 386,646 - ABIE51_RS01725 0.61 -0.1 386,646 - ABIE51_RS01725 0.61 +0.5 386,657 + ABIE51_RS01725 0.64 +0.5 386,802 - -0.1 386,890 + -0.5 388,564 - +0.7 388,564 - -0.1 388,564 - +0.5 388,564 - -0.1 388,571 - +0.1 388,571 - +1.6 388,571 - +0.6 388,590 + +0.0 388,590 + -0.2 388,590 + +0.2 388,591 - +0.3 388,591 - -0.9 388,591 - +0.6 388,619 + +0.6 388,619 + +0.6 388,619 + +0.2 388,620 - +1.9 388,620 - +0.8 388,620 - +0.6 388,655 + -0.4 388,655 + -0.1 388,656 - +0.3 388,661 + -0.1 388,661 + +0.2 388,661 + -0.1 388,661 + -0.6 388,661 + -0.2 388,661 + -0.1 388,661 + +0.0 388,661 + +0.0 388,662 - +1.5 388,662 - +0.5 388,662 - +0.4
Or see this region's nucleotide sequence