Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS19180

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS19170 and ABIE51_RS19175 are separated by 43 nucleotidesABIE51_RS19175 and ABIE51_RS19180 are separated by 9 nucleotidesABIE51_RS19180 and ABIE51_RS19185 are separated by 66 nucleotidesABIE51_RS19185 and ABIE51_RS19190 are separated by 147 nucleotides ABIE51_RS19170: ABIE51_RS19170 - COX15/CtaA family protein, at 4,180,738 to 4,181,904 _RS19170 ABIE51_RS19175: ABIE51_RS19175 - hypothetical protein, at 4,181,948 to 4,182,580 _RS19175 ABIE51_RS19180: ABIE51_RS19180 - SURF1 family protein, at 4,182,590 to 4,183,312 _RS19180 ABIE51_RS19185: ABIE51_RS19185 - twin transmembrane helix small protein, at 4,183,379 to 4,183,594 _RS19185 ABIE51_RS19190: ABIE51_RS19190 - cytochrome c oxidase subunit 3, at 4,183,742 to 4,184,620 _RS19190 Position (kb) 4182 4183 4184Strain fitness (log2 ratio) -3 -2 -1 0 1at 4181.738 kb on + strand, within ABIE51_RS19170at 4182.013 kb on - strand, within ABIE51_RS19175at 4182.034 kb on - strand, within ABIE51_RS19175at 4182.048 kb on + strand, within ABIE51_RS19175at 4182.049 kb on - strand, within ABIE51_RS19175at 4182.363 kb on + strand, within ABIE51_RS19175at 4182.364 kb on - strand, within ABIE51_RS19175at 4182.364 kb on - strand, within ABIE51_RS19175at 4182.591 kb on + strandat 4182.592 kb on - strandat 4183.023 kb on + strand, within ABIE51_RS19180at 4183.024 kb on - strand, within ABIE51_RS19180at 4183.116 kb on + strand, within ABIE51_RS19180at 4183.297 kb on + strandat 4183.297 kb on + strandat 4183.298 kb on - strandat 4183.298 kb on - strandat 4183.336 kb on + strandat 4183.336 kb on + strandat 4183.337 kb on - strandat 4183.337 kb on - strandat 4183.454 kb on + strand, within ABIE51_RS19185at 4183.454 kb on + strand, within ABIE51_RS19185at 4183.454 kb on + strand, within ABIE51_RS19185at 4183.454 kb on + strand, within ABIE51_RS19185at 4183.455 kb on - strand, within ABIE51_RS19185at 4183.455 kb on - strand, within ABIE51_RS19185at 4183.457 kb on + strand, within ABIE51_RS19185at 4183.457 kb on + strand, within ABIE51_RS19185at 4183.457 kb on + strand, within ABIE51_RS19185at 4183.457 kb on + strand, within ABIE51_RS19185at 4183.457 kb on + strand, within ABIE51_RS19185at 4183.457 kb on + strand, within ABIE51_RS19185at 4183.457 kb on + strand, within ABIE51_RS19185at 4183.457 kb on + strand, within ABIE51_RS19185at 4183.457 kb on + strand, within ABIE51_RS19185at 4183.457 kb on + strand, within ABIE51_RS19185at 4183.457 kb on + strand, within ABIE51_RS19185at 4183.458 kb on - strand, within ABIE51_RS19185at 4183.458 kb on - strand, within ABIE51_RS19185at 4183.458 kb on - strand, within ABIE51_RS19185at 4183.458 kb on - strand, within ABIE51_RS19185at 4183.458 kb on - strand, within ABIE51_RS19185at 4183.458 kb on - strand, within ABIE51_RS19185at 4183.458 kb on - strand, within ABIE51_RS19185at 4183.458 kb on - strand, within ABIE51_RS19185at 4183.559 kb on + strand, within ABIE51_RS19185at 4183.559 kb on + strand, within ABIE51_RS19185at 4183.559 kb on + strand, within ABIE51_RS19185at 4183.559 kb on + strand, within ABIE51_RS19185at 4183.559 kb on + strand, within ABIE51_RS19185at 4183.559 kb on + strand, within ABIE51_RS19185at 4183.559 kb on + strand, within ABIE51_RS19185at 4183.559 kb on + strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.560 kb on - strand, within ABIE51_RS19185at 4183.627 kb on + strandat 4183.628 kb on - strandat 4183.634 kb on + strandat 4183.634 kb on + strandat 4183.635 kb on - strandat 4183.743 kb on + strandat 4183.743 kb on + strandat 4183.743 kb on + strandat 4183.743 kb on + strandat 4183.743 kb on + strandat 4183.743 kb on + strandat 4183.744 kb on - strandat 4183.744 kb on - strandat 4183.744 kb on - strandat 4183.744 kb on - strandat 4183.744 kb on - strandat 4183.752 kb on + strandat 4183.753 kb on - strandat 4183.753 kb on - strandat 4183.753 kb on - strandat 4183.753 kb on - strandat 4183.944 kb on + strand, within ABIE51_RS19190at 4183.944 kb on + strand, within ABIE51_RS19190at 4183.944 kb on + strand, within ABIE51_RS19190at 4183.944 kb on + strand, within ABIE51_RS19190at 4183.945 kb on - strand, within ABIE51_RS19190at 4183.945 kb on - strand, within ABIE51_RS19190at 4183.945 kb on - strand, within ABIE51_RS19190at 4183.945 kb on - strand, within ABIE51_RS19190at 4183.945 kb on - strand, within ABIE51_RS19190at 4183.945 kb on - strand, within ABIE51_RS19190at 4183.945 kb on - strand, within ABIE51_RS19190at 4183.992 kb on + strand, within ABIE51_RS19190at 4183.992 kb on + strand, within ABIE51_RS19190at 4183.992 kb on + strand, within ABIE51_RS19190at 4183.992 kb on + strand, within ABIE51_RS19190at 4183.992 kb on + strand, within ABIE51_RS19190at 4183.992 kb on + strand, within ABIE51_RS19190at 4183.992 kb on + strand, within ABIE51_RS19190at 4183.992 kb on + strand, within ABIE51_RS19190at 4183.993 kb on - strand, within ABIE51_RS19190at 4183.993 kb on - strand, within ABIE51_RS19190at 4183.993 kb on - strand, within ABIE51_RS19190at 4183.993 kb on - strand, within ABIE51_RS19190at 4183.993 kb on - strand, within ABIE51_RS19190at 4183.993 kb on - strand, within ABIE51_RS19190at 4184.172 kb on + strand, within ABIE51_RS19190at 4184.172 kb on + strand, within ABIE51_RS19190at 4184.172 kb on + strand, within ABIE51_RS19190at 4184.173 kb on - strand, within ABIE51_RS19190at 4184.286 kb on + strand, within ABIE51_RS19190at 4184.299 kb on - strand, within ABIE51_RS19190at 4184.299 kb on - strand, within ABIE51_RS19190at 4184.299 kb on - strand, within ABIE51_RS19190at 4184.299 kb on - strand, within ABIE51_RS19190

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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4,181,738 + ABIE51_RS19170 0.86 -0.5
4,182,013 - ABIE51_RS19175 0.10 -1.7
4,182,034 - ABIE51_RS19175 0.14 -2.5
4,182,048 + ABIE51_RS19175 0.16 -0.8
4,182,049 - ABIE51_RS19175 0.16 -1.1
4,182,363 + ABIE51_RS19175 0.66 -0.5
4,182,364 - ABIE51_RS19175 0.66 +0.1
4,182,364 - ABIE51_RS19175 0.66 -0.8
4,182,591 + -0.9
4,182,592 - -0.5
4,183,023 + ABIE51_RS19180 0.60 -1.1
4,183,024 - ABIE51_RS19180 0.60 -1.4
4,183,116 + ABIE51_RS19180 0.73 -1.2
4,183,297 + +0.0
4,183,297 + -0.1
4,183,298 - -1.5
4,183,298 - -3.3
4,183,336 + -1.4
4,183,336 + +1.1
4,183,337 - -0.9
4,183,337 - -2.6
4,183,454 + ABIE51_RS19185 0.35 -0.7
4,183,454 + ABIE51_RS19185 0.35 -0.1
4,183,454 + ABIE51_RS19185 0.35 -0.7
4,183,454 + ABIE51_RS19185 0.35 -0.3
4,183,455 - ABIE51_RS19185 0.35 -1.2
4,183,455 - ABIE51_RS19185 0.35 -0.9
4,183,457 + ABIE51_RS19185 0.36 -0.2
4,183,457 + ABIE51_RS19185 0.36 -0.1
4,183,457 + ABIE51_RS19185 0.36 -0.0
4,183,457 + ABIE51_RS19185 0.36 -0.2
4,183,457 + ABIE51_RS19185 0.36 -0.8
4,183,457 + ABIE51_RS19185 0.36 -0.6
4,183,457 + ABIE51_RS19185 0.36 -0.6
4,183,457 + ABIE51_RS19185 0.36 -0.0
4,183,457 + ABIE51_RS19185 0.36 -0.6
4,183,457 + ABIE51_RS19185 0.36 +0.2
4,183,457 + ABIE51_RS19185 0.36 -0.9
4,183,458 - ABIE51_RS19185 0.37 -1.4
4,183,458 - ABIE51_RS19185 0.37 -0.5
4,183,458 - ABIE51_RS19185 0.37 -1.2
4,183,458 - ABIE51_RS19185 0.37 -0.9
4,183,458 - ABIE51_RS19185 0.37 -1.1
4,183,458 - ABIE51_RS19185 0.37 -0.9
4,183,458 - ABIE51_RS19185 0.37 -0.8
4,183,458 - ABIE51_RS19185 0.37 -1.6
4,183,559 + ABIE51_RS19185 0.83 +0.3
4,183,559 + ABIE51_RS19185 0.83 -0.8
4,183,559 + ABIE51_RS19185 0.83 +0.0
4,183,559 + ABIE51_RS19185 0.83 +0.0
4,183,559 + ABIE51_RS19185 0.83 -0.9
4,183,559 + ABIE51_RS19185 0.83 -2.0
4,183,559 + ABIE51_RS19185 0.83 -1.0
4,183,559 + ABIE51_RS19185 0.83 -0.3
4,183,560 - ABIE51_RS19185 0.84 -0.1
4,183,560 - ABIE51_RS19185 0.84 -2.2
4,183,560 - ABIE51_RS19185 0.84 -0.3
4,183,560 - ABIE51_RS19185 0.84 -0.9
4,183,560 - ABIE51_RS19185 0.84 -0.9
4,183,560 - ABIE51_RS19185 0.84 -0.9
4,183,560 - ABIE51_RS19185 0.84 -1.1
4,183,560 - ABIE51_RS19185 0.84 -0.8
4,183,560 - ABIE51_RS19185 0.84 -1.1
4,183,560 - ABIE51_RS19185 0.84 -0.6
4,183,560 - ABIE51_RS19185 0.84 +0.1
4,183,560 - ABIE51_RS19185 0.84 -0.6
4,183,627 + +0.2
4,183,628 - -1.0
4,183,634 + -0.2
4,183,634 + +0.2
4,183,635 - -0.3
4,183,743 + +0.2
4,183,743 + -0.3
4,183,743 + +0.7
4,183,743 + +0.9
4,183,743 + -0.4
4,183,743 + -0.5
4,183,744 - -0.1
4,183,744 - -0.0
4,183,744 - -0.5
4,183,744 - -0.2
4,183,744 - +0.1
4,183,752 + +0.5
4,183,753 - -0.7
4,183,753 - +0.2
4,183,753 - -0.3
4,183,753 - -0.7
4,183,944 + ABIE51_RS19190 0.23 -0.8
4,183,944 + ABIE51_RS19190 0.23 -0.0
4,183,944 + ABIE51_RS19190 0.23 +0.4
4,183,944 + ABIE51_RS19190 0.23 -0.4
4,183,945 - ABIE51_RS19190 0.23 -0.7
4,183,945 - ABIE51_RS19190 0.23 -1.2
4,183,945 - ABIE51_RS19190 0.23 +0.6
4,183,945 - ABIE51_RS19190 0.23 -0.4
4,183,945 - ABIE51_RS19190 0.23 -3.0
4,183,945 - ABIE51_RS19190 0.23 -0.4
4,183,945 - ABIE51_RS19190 0.23 -0.9
4,183,992 + ABIE51_RS19190 0.28 -0.0
4,183,992 + ABIE51_RS19190 0.28 -0.0
4,183,992 + ABIE51_RS19190 0.28 +0.2
4,183,992 + ABIE51_RS19190 0.28 -1.5
4,183,992 + ABIE51_RS19190 0.28 -0.9
4,183,992 + ABIE51_RS19190 0.28 +0.2
4,183,992 + ABIE51_RS19190 0.28 -1.6
4,183,992 + ABIE51_RS19190 0.28 -0.3
4,183,993 - ABIE51_RS19190 0.29 -0.8
4,183,993 - ABIE51_RS19190 0.29 -0.7
4,183,993 - ABIE51_RS19190 0.29 -0.6
4,183,993 - ABIE51_RS19190 0.29 -0.5
4,183,993 - ABIE51_RS19190 0.29 -0.3
4,183,993 - ABIE51_RS19190 0.29 -0.2
4,184,172 + ABIE51_RS19190 0.49 -0.5
4,184,172 + ABIE51_RS19190 0.49 -1.0
4,184,172 + ABIE51_RS19190 0.49 -0.6
4,184,173 - ABIE51_RS19190 0.49 -1.3
4,184,286 + ABIE51_RS19190 0.62 -0.3
4,184,299 - ABIE51_RS19190 0.63 -0.8
4,184,299 - ABIE51_RS19190 0.63 -0.5
4,184,299 - ABIE51_RS19190 0.63 -0.9
4,184,299 - ABIE51_RS19190 0.63 +1.4

Or see this region's nucleotide sequence