Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS17505

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
3,821,585	+		ABIE51_RS17500	0.29	-0.7
3,821,585	+		ABIE51_RS17500	0.29	+0.0
3,821,585	+		ABIE51_RS17500	0.29	-0.9
3,821,585	+		ABIE51_RS17500	0.29	-1.6
3,821,585	+		ABIE51_RS17500	0.29	-1.2
3,821,585	+		ABIE51_RS17500	0.29	-1.2
3,821,586	-		ABIE51_RS17500	0.29	-1.2
3,821,586	-		ABIE51_RS17500	0.29	-0.8
3,821,586	-		ABIE51_RS17500	0.29	-0.6
3,821,586	-		ABIE51_RS17500	0.29	-1.0
3,821,586	-		ABIE51_RS17500	0.29	-1.6
3,821,586	-		ABIE51_RS17500	0.29	-1.2
3,821,586	-		ABIE51_RS17500	0.29	-0.6
3,821,586	-		ABIE51_RS17500	0.29	-1.2
3,821,612	+		ABIE51_RS17500	0.31	-0.5
3,821,612	+		ABIE51_RS17500	0.31	-1.5
3,821,612	+		ABIE51_RS17500	0.31	-0.3
3,821,612	+		ABIE51_RS17500	0.31	-1.1
3,821,612	+		ABIE51_RS17500	0.31	-0.7
3,821,612	+		ABIE51_RS17500	0.31	-0.8
3,821,612	+		ABIE51_RS17500	0.31	-1.1
3,821,612	+		ABIE51_RS17500	0.31	-0.6
3,821,612	+		ABIE51_RS17500	0.31	-0.7
3,821,612	+		ABIE51_RS17500	0.31	-1.0
3,821,612	+		ABIE51_RS17500	0.31	-0.6
3,821,612	+		ABIE51_RS17500	0.31	+0.6
3,821,613	-		ABIE51_RS17500	0.32	+0.3
3,821,613	-		ABIE51_RS17500	0.32	-0.4
3,821,613	-		ABIE51_RS17500	0.32	-0.8
3,821,613	-		ABIE51_RS17500	0.32	-1.1
3,821,613	-		ABIE51_RS17500	0.32	-0.9
3,821,613	-		ABIE51_RS17500	0.32	-1.4
3,821,613	-		ABIE51_RS17500	0.32	+0.3
3,821,613	-		ABIE51_RS17500	0.32	-1.2
3,821,613	-		ABIE51_RS17500	0.32	-0.1
3,821,613	-		ABIE51_RS17500	0.32	-0.4
3,821,613	-		ABIE51_RS17500	0.32	-0.8
3,821,613	-		ABIE51_RS17500	0.32	+0.8
3,821,613	-		ABIE51_RS17500	0.32	-0.3
3,821,613	-		ABIE51_RS17500	0.32	-0.9
3,821,684	+		ABIE51_RS17500	0.39	-0.7
3,821,684	+		ABIE51_RS17500	0.39	-0.8
3,821,684	+		ABIE51_RS17500	0.39	-0.8
3,821,684	+		ABIE51_RS17500	0.39	-0.9
3,821,684	+		ABIE51_RS17500	0.39	-1.2
3,821,684	+		ABIE51_RS17500	0.39	-0.9
3,821,684	+		ABIE51_RS17500	0.39	+1.3
3,821,684	+		ABIE51_RS17500	0.39	-1.0
3,821,684	+		ABIE51_RS17500	0.39	-0.8
3,821,685	-		ABIE51_RS17500	0.39	-1.2
3,821,685	-		ABIE51_RS17500	0.39	-0.7
3,821,685	-		ABIE51_RS17500	0.39	-0.4
3,821,685	-		ABIE51_RS17500	0.39	-0.7
3,821,685	-		ABIE51_RS17500	0.39	+0.8
3,821,685	-		ABIE51_RS17500	0.39	-0.7
3,821,924	+		ABIE51_RS17500	0.65	-1.4
3,821,925	-		ABIE51_RS17500	0.65	-1.1
3,821,925	-		ABIE51_RS17500	0.65	-0.9
3,821,925	-		ABIE51_RS17500	0.65	-1.0
3,821,925	-		ABIE51_RS17500	0.65	-1.0
3,821,925	-		ABIE51_RS17500	0.65	-0.5
3,821,925	-		ABIE51_RS17500	0.65	-1.0
3,821,925	-		ABIE51_RS17500	0.65	-1.9
3,822,289	-				-0.8
3,822,482	+				-1.1
3,822,482	+				-0.4
3,822,482	+				-1.3
3,822,483	-				-1.3
3,822,851	+		ABIE51_RS17505	0.20	-0.1
3,822,851	+		ABIE51_RS17505	0.20	-0.4
3,822,851	+		ABIE51_RS17505	0.20	-0.4
3,822,851	+		ABIE51_RS17505	0.20	-0.8
3,822,852	-		ABIE51_RS17505	0.20	-0.7
3,822,852	-		ABIE51_RS17505	0.20	-0.8
3,822,852	-		ABIE51_RS17505	0.20	-0.1
3,822,852	-		ABIE51_RS17505	0.20	-0.8
3,822,852	-		ABIE51_RS17505	0.20	-1.5
3,822,920	+		ABIE51_RS17505	0.23	-1.0
3,822,920	+		ABIE51_RS17505	0.23	-1.0
3,822,920	+		ABIE51_RS17505	0.23	-0.3
3,822,920	+		ABIE51_RS17505	0.23	-0.9
3,822,921	-		ABIE51_RS17505	0.23	-0.9
3,823,286	+		ABIE51_RS17505	0.38	-1.0
3,823,286	+		ABIE51_RS17505	0.38	-0.9
3,823,287	-		ABIE51_RS17505	0.38	-0.4
3,823,287	-		ABIE51_RS17505	0.38	+0.0
3,823,298	+		ABIE51_RS17505	0.39	-1.1
3,823,298	+		ABIE51_RS17505	0.39	-1.0
3,823,298	+		ABIE51_RS17505	0.39	-0.8
3,823,298	+		ABIE51_RS17505	0.39	-1.3
3,823,299	-		ABIE51_RS17505	0.39	-1.7
3,823,299	-		ABIE51_RS17505	0.39	-1.2
3,823,299	-		ABIE51_RS17505	0.39	-0.8
3,823,418	+		ABIE51_RS17505	0.44	-0.8
3,823,599	-		ABIE51_RS17505	0.52	-0.5
3,823,637	+		ABIE51_RS17505	0.53	-0.5
3,823,637	+		ABIE51_RS17505	0.53	-0.4
3,823,637	+		ABIE51_RS17505	0.53	+0.3
3,823,638	-		ABIE51_RS17505	0.53	-0.3
3,823,638	-		ABIE51_RS17505	0.53	-0.8
3,823,676	-		ABIE51_RS17505	0.55	-0.5
3,823,676	-		ABIE51_RS17505	0.55	-0.5
3,823,676	-		ABIE51_RS17505	0.55	-0.9
3,823,997	+		ABIE51_RS17505	0.69	-1.5
3,823,997	+		ABIE51_RS17505	0.69	-1.2
3,823,997	+		ABIE51_RS17505	0.69	-0.9
3,823,997	+		ABIE51_RS17505	0.69	-0.6
3,823,997	+		ABIE51_RS17505	0.69	-0.3
3,823,998	-		ABIE51_RS17505	0.69	-1.2
3,823,998	-		ABIE51_RS17505	0.69	-0.3
3,823,998	-		ABIE51_RS17505	0.69	-1.6
3,823,998	-		ABIE51_RS17505	0.69	+0.1
3,823,998	-		ABIE51_RS17505	0.69	-0.2
3,823,998	-		ABIE51_RS17505	0.69	-1.2
3,823,998	-		ABIE51_RS17505	0.69	-1.3
3,823,998	-		ABIE51_RS17505	0.69	-0.1
3,824,070	-		ABIE51_RS17505	0.72	-0.9
3,824,189	+		ABIE51_RS17505	0.77	-1.2
3,824,294	+		ABIE51_RS17505	0.81	-1.3
3,824,294	+		ABIE51_RS17505	0.81	-1.2
3,824,294	+		ABIE51_RS17505	0.81	-1.5
3,824,432	+		ABIE51_RS17505	0.87	-0.8
3,824,432	+		ABIE51_RS17505	0.87	-0.9
3,824,433	-		ABIE51_RS17505	0.87	-1.4
3,824,433	-		ABIE51_RS17505	0.87	-1.5
3,824,433	-		ABIE51_RS17505	0.87	-1.7
3,824,790	+				+1.3
3,824,790	+				-0.5
3,824,790	+				-0.1
3,824,791	-				+0.7
3,824,791	-				+0.6
3,824,791	-				+0.1
3,824,859	+				+0.0
3,824,859	+				-0.0
3,824,859	+				+0.4
3,824,860	-				-1.4
3,824,874	+				-1.0
3,824,874	+				+0.3
3,824,875	-				+0.3
3,824,920	+				-0.4
3,824,920	+				+0.3
3,824,921	-				-0.3
3,824,921	-				-0.7
3,824,921	-				-0.3
3,824,921	-				-0.4
3,824,921	-				-0.1
3,824,923	+				-0.1
3,824,923	+				+0.3
3,824,923	+				+0.4
3,824,923	+				-0.5
3,824,924	-				-0.5
3,824,924	-				-1.0
3,824,924	-				-0.2
3,824,924	-				-1.0
3,824,924	-				-0.4
3,824,924	-				-0.5
3,824,932	+				+1.0
3,824,933	-				+0.7
3,824,933	-				-0.6
3,824,933	-				-0.4
3,824,933	-				+0.0
3,824,933	-				-2.7
3,824,933	-				-0.9
3,824,933	-				-0.4
3,825,041	+				-0.1
3,825,041	+				+0.7
3,825,041	+				+0.7
3,825,041	+				+0.4
3,825,042	-				-0.0
3,825,042	-				-0.6
3,825,042	-				-0.2
3,825,042	-				-0.5
3,825,042	-				-1.1
3,825,055	+				-0.5
3,825,056	-				-0.7
3,825,066	+				-0.2
3,825,066	+				-0.5
3,825,067	-				-1.1
3,825,067	-				-1.6
3,825,105	+				+0.5
3,825,105	+				+0.6
3,825,105	+				-0.2
3,825,106	-				-0.4
3,825,106	-				-0.5
3,825,106	-				-0.0
3,825,106	-				-0.6
3,825,106	-				-0.4
3,825,162	+				-1.2
3,825,162	+				-1.5
3,825,163	-				-0.9
3,825,163	-				-0.5
3,825,163	-				+0.4
3,825,163	-				-0.2
3,825,163	-				-1.6
3,825,351	+		ABIE51_RS17510	0.36	+0.0
3,825,351	+		ABIE51_RS17510	0.36	-0.6
3,825,352	-		ABIE51_RS17510	0.36	-0.5
3,825,352	-		ABIE51_RS17510	0.36	-0.9
3,825,352	-		ABIE51_RS17510	0.36	-0.4
3,825,352	-		ABIE51_RS17510	0.36	-0.1
3,825,352	-		ABIE51_RS17510	0.36	-0.2
3,825,357	+		ABIE51_RS17510	0.37	+0.1
3,825,441	+		ABIE51_RS17510	0.49	-0.8
3,825,441	+		ABIE51_RS17510	0.49	-0.5
3,825,441	+		ABIE51_RS17510	0.49	-0.3
3,825,441	+		ABIE51_RS17510	0.49	+0.3
3,825,441	+		ABIE51_RS17510	0.49	+0.1
3,825,442	-		ABIE51_RS17510	0.49	-0.4
3,825,442	-		ABIE51_RS17510	0.49	-0.1
3,825,442	-		ABIE51_RS17510	0.49	-0.5
3,825,442	-		ABIE51_RS17510	0.49	-0.1
3,825,442	-		ABIE51_RS17510	0.49	-0.7
3,825,442	-		ABIE51_RS17510	0.49	+0.2
3,825,442	-		ABIE51_RS17510	0.49	-0.3
3,825,442	-		ABIE51_RS17510	0.49	-0.2
3,825,465	+		ABIE51_RS17510	0.53	-0.4
3,825,465	+		ABIE51_RS17510	0.53	+0.1
3,825,465	+		ABIE51_RS17510	0.53	-0.6
3,825,465	+		ABIE51_RS17510	0.53	-0.3
3,825,465	+		ABIE51_RS17510	0.53	+0.1
3,825,466	+		ABIE51_RS17510	0.53	+1.3
3,825,466	-		ABIE51_RS17510	0.53	+0.3
3,825,466	-		ABIE51_RS17510	0.53	-0.3
3,825,466	-		ABIE51_RS17510	0.53	+0.2
3,825,466	-		ABIE51_RS17510	0.53	-0.3
3,825,471	+		ABIE51_RS17510	0.53	-0.6
3,825,471	+		ABIE51_RS17510	0.53	+0.3
3,825,472	-		ABIE51_RS17510	0.54	-0.4
3,825,472	-		ABIE51_RS17510	0.54	+0.3
3,825,472	-		ABIE51_RS17510	0.54	-0.5
3,825,472	-		ABIE51_RS17510	0.54	+0.2
3,825,472	-		ABIE51_RS17510	0.54	-0.4
3,825,690	+		ABIE51_RS17510	0.85	-0.6
3,825,691	-		ABIE51_RS17510	0.85	+0.6