Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS14060 and ABIE51_RS14065 are separated by 1 nucleotides ABIE51_RS14065 and ABIE51_RS14070 are separated by 22 nucleotides ABIE51_RS14070 and ABIE51_RS14075 overlap by 1 nucleotides ABIE51_RS14075 and ABIE51_RS14080 are separated by 259 nucleotides ABIE51_RS14080 and ABIE51_RS14085 are separated by 98 nucleotides
ABIE51_RS14060: ABIE51_RS14060 - MBL fold metallo-hydrolase, at 3,043,623 to 3,044,381
_RS14060
ABIE51_RS14065: ABIE51_RS14065 - 3-deoxy-D-manno-octulosonic acid kinase, at 3,044,383 to 3,045,132
_RS14065
ABIE51_RS14070: ABIE51_RS14070 - glycosyltransferase family 9 protein, at 3,045,155 to 3,046,258
_RS14070
ABIE51_RS14075: ABIE51_RS14075 - hypothetical protein, at 3,046,258 to 3,046,608
_RS14075
ABIE51_RS14080: ABIE51_RS14080 - tRNA-Ser, at 3,046,868 to 3,046,958
_RS14080
ABIE51_RS14085: ABIE51_RS14085 - DUF6165 family protein, at 3,047,057 to 3,047,464
_RS14085
Position (kb)
3045
3046
3047 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3044.201 kb on + strand, within ABIE51_RS14060 at 3044.201 kb on + strand, within ABIE51_RS14060 at 3044.202 kb on - strand, within ABIE51_RS14060 at 3044.239 kb on + strand, within ABIE51_RS14060 at 3044.240 kb on - strand, within ABIE51_RS14060 at 3044.248 kb on + strand, within ABIE51_RS14060 at 3044.387 kb on + strand at 3044.411 kb on + strand at 3045.144 kb on + strand at 3045.144 kb on + strand at 3045.515 kb on + strand, within ABIE51_RS14070 at 3046.058 kb on + strand, within ABIE51_RS14070 at 3046.059 kb on - strand, within ABIE51_RS14070 at 3046.074 kb on - strand, within ABIE51_RS14070 at 3046.074 kb on - strand, within ABIE51_RS14070 at 3046.088 kb on + strand, within ABIE51_RS14070 at 3046.088 kb on + strand, within ABIE51_RS14070 at 3046.089 kb on - strand, within ABIE51_RS14070 at 3046.109 kb on + strand, within ABIE51_RS14070 at 3046.109 kb on + strand, within ABIE51_RS14070 at 3046.214 kb on + strand at 3046.215 kb on - strand at 3046.591 kb on + strand at 3046.732 kb on + strand at 3046.982 kb on - strand at 3047.024 kb on + strand at 3047.024 kb on + strand at 3047.025 kb on - strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 3,044,201 + ABIE51_RS14060 0.76 -1.6 3,044,201 + ABIE51_RS14060 0.76 +1.2 3,044,202 - ABIE51_RS14060 0.76 -0.8 3,044,239 + ABIE51_RS14060 0.81 -0.0 3,044,240 - ABIE51_RS14060 0.81 -0.3 3,044,248 + ABIE51_RS14060 0.82 -1.0 3,044,387 + -0.5 3,044,411 + -0.0 3,045,144 + -0.7 3,045,144 + +0.2 3,045,515 + ABIE51_RS14070 0.33 -1.7 3,046,058 + ABIE51_RS14070 0.82 -3.5 3,046,059 - ABIE51_RS14070 0.82 -2.5 3,046,074 - ABIE51_RS14070 0.83 -2.7 3,046,074 - ABIE51_RS14070 0.83 -1.5 3,046,088 + ABIE51_RS14070 0.85 -0.8 3,046,088 + ABIE51_RS14070 0.85 -2.1 3,046,089 - ABIE51_RS14070 0.85 -3.3 3,046,109 + ABIE51_RS14070 0.86 -3.0 3,046,109 + ABIE51_RS14070 0.86 -3.4 3,046,214 + +0.2 3,046,215 - +0.1 3,046,591 + +0.3 3,046,732 + +0.3 3,046,982 - -1.3 3,047,024 + -0.5 3,047,024 + +0.1 3,047,025 - +0.3 3,047,031 + +0.2 3,047,031 + +0.3 3,047,031 + +0.1 3,047,031 + +0.8 3,047,031 + +0.1 3,047,031 + -0.1 3,047,031 + -0.6 3,047,031 + -0.2 3,047,032 - +0.6 3,047,032 - +0.7 3,047,032 - +0.4 3,047,032 - +0.9 3,047,032 - -0.1 3,047,032 - +0.7 3,047,032 - -0.0 3,047,032 - +2.2 3,047,032 - -0.0 3,047,032 - +0.4
Or see this region's nucleotide sequence