Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS13265

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,863,595	+		ABIE51_RS13260	0.45	-2.6
2,863,596	-		ABIE51_RS13260	0.45	-2.9
2,863,596	-		ABIE51_RS13260	0.45	-0.2
2,863,596	-		ABIE51_RS13260	0.45	-1.6
2,863,596	-		ABIE51_RS13260	0.45	-1.8
2,863,596	-		ABIE51_RS13260	0.45	-1.5
2,863,653	-		ABIE51_RS13260	0.49	-2.8
2,863,700	+		ABIE51_RS13260	0.52	-1.3
2,863,700	+		ABIE51_RS13260	0.52	-2.4
2,863,701	-		ABIE51_RS13260	0.52	-2.7
2,863,805	+		ABIE51_RS13260	0.59	-2.5
2,863,805	+		ABIE51_RS13260	0.59	-3.7
2,863,805	+		ABIE51_RS13260	0.59	-2.1
2,863,805	+		ABIE51_RS13260	0.59	-0.1
2,863,806	-		ABIE51_RS13260	0.59	-2.6
2,863,806	-		ABIE51_RS13260	0.59	-2.6
2,863,806	-		ABIE51_RS13260	0.59	-4.3
2,863,806	-		ABIE51_RS13260	0.59	-2.1
2,863,806	-		ABIE51_RS13260	0.59	-3.4
2,863,845	-		ABIE51_RS13260	0.62	-3.7
2,863,995	-		ABIE51_RS13260	0.72	-3.1
2,864,063	+		ABIE51_RS13260	0.77	-2.6
2,864,063	+		ABIE51_RS13260	0.77	-0.5
2,864,063	+		ABIE51_RS13260	0.77	-2.8
2,864,063	+		ABIE51_RS13260	0.77	-2.0
2,864,063	+		ABIE51_RS13260	0.77	-2.5
2,864,064	-		ABIE51_RS13260	0.77	-2.8
2,864,064	-		ABIE51_RS13260	0.77	-1.1
2,864,064	-		ABIE51_RS13260	0.77	-4.2
2,864,064	-		ABIE51_RS13260	0.77	-1.7
2,864,078	+		ABIE51_RS13260	0.78	-1.0
2,864,079	-		ABIE51_RS13260	0.78	-2.0
2,864,282	+				-1.0
2,864,283	-				-1.3
2,864,354	+				-1.5
2,864,354	+				-2.8
2,864,354	+				-2.4
2,864,355	-				-0.3
2,864,363	+				-2.9
2,864,363	+				-1.1
2,864,364	-				-2.7
2,864,418	+				+0.4
2,864,418	+				+0.1
2,864,740	-		ABIE51_RS13265	0.16	-1.9
2,864,781	+		ABIE51_RS13265	0.19	-1.4
2,864,782	-		ABIE51_RS13265	0.19	-1.8
2,864,782	-		ABIE51_RS13265	0.19	-1.3
2,864,782	-		ABIE51_RS13265	0.19	-1.2
2,864,787	+		ABIE51_RS13265	0.20	-0.8
2,864,787	+		ABIE51_RS13265	0.20	-1.0
2,864,787	+		ABIE51_RS13265	0.20	+0.9
2,864,788	-		ABIE51_RS13265	0.20	-0.2
2,864,788	-		ABIE51_RS13265	0.20	-1.8
2,864,793	+		ABIE51_RS13265	0.20	-0.9
2,864,793	+		ABIE51_RS13265	0.20	-0.8
2,864,843	-		ABIE51_RS13265	0.24	-1.6
2,864,850	+		ABIE51_RS13265	0.24	-0.3
2,864,993	+		ABIE51_RS13265	0.34	-0.1
2,864,994	-		ABIE51_RS13265	0.34	-1.2
2,865,036	+		ABIE51_RS13265	0.37	-0.9
2,865,129	+		ABIE51_RS13265	0.44	-0.5
2,865,129	+		ABIE51_RS13265	0.44	-0.5
2,865,129	+		ABIE51_RS13265	0.44	-0.8
2,865,130	-		ABIE51_RS13265	0.44	-2.7
2,865,130	-		ABIE51_RS13265	0.44	-0.4
2,865,130	-		ABIE51_RS13265	0.44	-0.4
2,865,130	-		ABIE51_RS13265	0.44	-0.6
2,865,130	-		ABIE51_RS13265	0.44	-0.7
2,865,130	-		ABIE51_RS13265	0.44	-0.9
2,865,145	-		ABIE51_RS13265	0.45	-1.2
2,865,186	+		ABIE51_RS13265	0.48	-0.9
2,865,186	+		ABIE51_RS13265	0.48	-0.7
2,865,186	+		ABIE51_RS13265	0.48	-0.6
2,865,187	-		ABIE51_RS13265	0.48	-1.4
2,865,187	-		ABIE51_RS13265	0.48	-0.2
2,865,187	-		ABIE51_RS13265	0.48	-1.1
2,865,187	-		ABIE51_RS13265	0.48	-0.8
2,865,235	-		ABIE51_RS13265	0.51	-0.9
2,865,339	+		ABIE51_RS13265	0.58	-0.7
2,865,339	+		ABIE51_RS13265	0.58	-1.3
2,865,339	+		ABIE51_RS13265	0.58	-0.8
2,865,339	+		ABIE51_RS13265	0.58	-1.5
2,865,339	+		ABIE51_RS13265	0.58	-1.5
2,865,340	-		ABIE51_RS13265	0.58	-0.5
2,865,340	-		ABIE51_RS13265	0.58	-1.8
2,865,340	-		ABIE51_RS13265	0.58	-1.1
2,865,340	-		ABIE51_RS13265	0.58	-0.7
2,865,525	+		ABIE51_RS13265	0.71	-0.8
2,865,863	-				-2.1
2,865,888	+				-1.1
2,865,888	+				-0.6
2,865,888	+				-0.8
2,865,889	-				-1.7
2,865,889	-				-2.1
2,865,889	-				-1.2
2,865,889	-				-0.9
2,865,889	-				-0.5
2,865,897	+				-1.0
2,865,897	+				-0.4
2,865,897	+				-0.9
2,866,070	+				-0.1
2,866,071	-				-0.3
2,866,116	-				-1.1
2,866,370	+		ABIE51_RS13270	0.43	-0.1
2,866,371	-		ABIE51_RS13270	0.43	-0.9
2,866,371	-		ABIE51_RS13270	0.43	+0.7
2,866,475	+		ABIE51_RS13270	0.59	-0.0
2,866,476	-		ABIE51_RS13270	0.59	-0.0
2,866,476	-		ABIE51_RS13270	0.59	-1.2
2,866,476	-		ABIE51_RS13270	0.59	-0.1
2,866,557	+		ABIE51_RS13270	0.72	-0.8
2,866,614	-		ABIE51_RS13270	0.81	-1.1
2,866,637	+		ABIE51_RS13270	0.85	-1.1
2,866,637	+		ABIE51_RS13270	0.85	-0.7
2,866,638	-		ABIE51_RS13270	0.85	-1.7
2,866,638	-		ABIE51_RS13270	0.85	-0.5
2,866,903	+		ABIE51_RS13275	0.31	+0.1