Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01105 and ABIE51_RS01110 are separated by 154 nucleotides ABIE51_RS01110 and ABIE51_RS01115 are separated by 301 nucleotides ABIE51_RS01115 and ABIE51_RS01120 are separated by 156 nucleotides
ABIE51_RS01105: ABIE51_RS01105 - ExeM/NucH family extracellular endonuclease, at 236,977 to 238,665
_RS01105
ABIE51_RS01110: ABIE51_RS01110 - c-type cytochrome, at 238,820 to 239,335
_RS01110
ABIE51_RS01115: ABIE51_RS01115 - tRNA-Arg, at 239,637 to 239,713
_RS01115
ABIE51_RS01120: ABIE51_RS01120 - 4-hydroxybenzoate octaprenyltransferase, at 239,870 to 240,778
_RS01120
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2 at 237.872 kb on - strand, within ABIE51_RS01105 at 238.202 kb on + strand, within ABIE51_RS01105 at 238.202 kb on + strand, within ABIE51_RS01105 at 238.202 kb on + strand, within ABIE51_RS01105 at 238.203 kb on - strand, within ABIE51_RS01105 at 238.203 kb on - strand, within ABIE51_RS01105 at 238.379 kb on - strand, within ABIE51_RS01105 at 238.396 kb on + strand, within ABIE51_RS01105 at 238.396 kb on + strand, within ABIE51_RS01105 at 238.396 kb on + strand, within ABIE51_RS01105 at 238.396 kb on + strand, within ABIE51_RS01105 at 238.396 kb on + strand, within ABIE51_RS01105 at 238.397 kb on - strand, within ABIE51_RS01105 at 238.397 kb on - strand, within ABIE51_RS01105 at 238.397 kb on - strand, within ABIE51_RS01105 at 238.397 kb on - strand, within ABIE51_RS01105 at 238.397 kb on - strand, within ABIE51_RS01105 at 238.397 kb on - strand, within ABIE51_RS01105 at 238.397 kb on - strand, within ABIE51_RS01105 at 238.397 kb on - strand, within ABIE51_RS01105 at 238.695 kb on + strand at 238.695 kb on + strand at 238.821 kb on + strand at 238.821 kb on + strand at 238.822 kb on - strand at 238.822 kb on - strand at 238.822 kb on - strand at 238.822 kb on - strand at 238.822 kb on - strand at 239.079 kb on + strand, within ABIE51_RS01110 at 239.079 kb on + strand, within ABIE51_RS01110 at 239.080 kb on - strand, within ABIE51_RS01110 at 239.080 kb on - strand, within ABIE51_RS01110 at 239.157 kb on + strand, within ABIE51_RS01110 at 239.157 kb on + strand, within ABIE51_RS01110 at 239.157 kb on + strand, within ABIE51_RS01110 at 239.157 kb on + strand, within ABIE51_RS01110 at 239.158 kb on - strand, within ABIE51_RS01110 at 239.158 kb on - strand, within ABIE51_RS01110 at 239.158 kb on - strand, within ABIE51_RS01110 at 239.158 kb on - strand, within ABIE51_RS01110 at 239.158 kb on - strand, within ABIE51_RS01110 at 239.158 kb on - strand, within ABIE51_RS01110 at 239.158 kb on - strand, within ABIE51_RS01110 at 239.325 kb on + strand at 239.325 kb on + strand at 239.325 kb on + strand at 239.325 kb on + strand at 239.325 kb on + strand at 239.325 kb on + strand at 239.325 kb on + strand at 239.326 kb on - strand at 239.326 kb on - strand at 239.326 kb on - strand at 239.326 kb on - strand at 239.326 kb on - strand at 239.326 kb on - strand at 239.345 kb on + strand at 239.345 kb on + strand at 239.345 kb on + strand at 239.345 kb on + strand at 239.345 kb on + strand at 239.346 kb on - strand at 239.346 kb on - strand at 239.346 kb on - strand at 239.346 kb on - strand at 239.346 kb on - strand at 239.346 kb on - strand at 239.346 kb on - strand at 239.412 kb on + strand at 239.412 kb on + strand at 239.413 kb on - strand at 239.413 kb on - strand at 239.413 kb on - strand at 239.414 kb on + strand at 239.414 kb on + strand at 239.414 kb on + strand at 239.414 kb on + strand at 239.414 kb on + strand at 239.414 kb on + strand at 239.414 kb on + strand at 239.414 kb on + strand at 239.414 kb on + strand at 239.414 kb on + strand at 239.415 kb on - strand at 239.415 kb on - strand at 239.425 kb on - strand at 239.437 kb on + strand at 239.437 kb on + strand at 239.438 kb on - strand at 239.438 kb on - strand at 239.438 kb on - strand at 239.438 kb on - strand at 239.438 kb on - strand at 239.438 kb on - strand at 239.438 kb on - strand at 239.438 kb on - strand at 239.500 kb on + strand at 239.501 kb on - strand at 239.501 kb on - strand at 239.556 kb on + strand at 239.556 kb on + strand at 239.556 kb on + strand at 239.556 kb on + strand at 239.556 kb on + strand at 239.556 kb on + strand at 239.557 kb on - strand at 239.557 kb on - strand at 239.557 kb on - strand at 239.557 kb on - strand at 239.557 kb on - strand at 239.557 kb on - strand at 239.557 kb on - strand at 239.558 kb on + strand at 239.559 kb on - strand at 239.559 kb on - strand at 239.568 kb on + strand at 239.568 kb on + strand at 239.569 kb on - strand at 239.569 kb on - strand at 239.569 kb on - strand at 239.569 kb on - strand at 239.569 kb on - strand at 239.569 kb on - strand at 239.569 kb on - strand at 239.569 kb on - strand at 239.632 kb on + strand at 239.632 kb on + strand at 239.632 kb on + strand at 239.632 kb on + strand at 239.632 kb on + strand at 239.633 kb on - strand at 239.633 kb on - strand at 239.633 kb on - strand at 239.633 kb on - strand at 239.633 kb on - strand at 239.633 kb on - strand at 239.633 kb on - strand at 239.633 kb on - strand at 239.633 kb on - strand at 239.633 kb on - strand at 239.776 kb on + strand at 239.777 kb on - strand at 239.876 kb on + strand at 239.876 kb on + strand at 239.876 kb on + strand at 239.876 kb on + strand at 239.876 kb on + strand at 239.930 kb on + strand at 239.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 237,872 - ABIE51_RS01105 0.53 +0.2 238,202 + ABIE51_RS01105 0.73 -0.3 238,202 + ABIE51_RS01105 0.73 +0.1 238,202 + ABIE51_RS01105 0.73 +0.1 238,203 - ABIE51_RS01105 0.73 +0.3 238,203 - ABIE51_RS01105 0.73 -0.4 238,379 - ABIE51_RS01105 0.83 -0.1 238,396 + ABIE51_RS01105 0.84 -1.1 238,396 + ABIE51_RS01105 0.84 -0.1 238,396 + ABIE51_RS01105 0.84 -1.3 238,396 + ABIE51_RS01105 0.84 -0.1 238,396 + ABIE51_RS01105 0.84 -0.5 238,397 - ABIE51_RS01105 0.84 +0.1 238,397 - ABIE51_RS01105 0.84 +0.7 238,397 - ABIE51_RS01105 0.84 +0.7 238,397 - ABIE51_RS01105 0.84 +0.2 238,397 - ABIE51_RS01105 0.84 -0.8 238,397 - ABIE51_RS01105 0.84 +0.3 238,397 - ABIE51_RS01105 0.84 -0.7 238,397 - ABIE51_RS01105 0.84 +0.0 238,695 + +0.8 238,695 + +0.2 238,821 + -0.6 238,821 + -0.4 238,822 - +0.4 238,822 - -0.7 238,822 - -0.1 238,822 - -0.1 238,822 - +0.1 239,079 + ABIE51_RS01110 0.50 -0.9 239,079 + ABIE51_RS01110 0.50 -0.6 239,080 - ABIE51_RS01110 0.50 -0.4 239,080 - ABIE51_RS01110 0.50 -0.7 239,157 + ABIE51_RS01110 0.65 -2.0 239,157 + ABIE51_RS01110 0.65 -2.7 239,157 + ABIE51_RS01110 0.65 -0.4 239,157 + ABIE51_RS01110 0.65 -1.1 239,158 - ABIE51_RS01110 0.66 -0.9 239,158 - ABIE51_RS01110 0.66 -1.1 239,158 - ABIE51_RS01110 0.66 -0.5 239,158 - ABIE51_RS01110 0.66 -1.2 239,158 - ABIE51_RS01110 0.66 +0.0 239,158 - ABIE51_RS01110 0.66 -0.2 239,158 - ABIE51_RS01110 0.66 -1.3 239,325 + -2.7 239,325 + -1.4 239,325 + -1.0 239,325 + -1.2 239,325 + -0.7 239,325 + -1.6 239,325 + -0.8 239,326 - +0.0 239,326 - -0.5 239,326 - -1.1 239,326 - +0.3 239,326 - -0.6 239,326 - -0.3 239,345 + -0.6 239,345 + +0.1 239,345 + -0.7 239,345 + +1.1 239,345 + -0.9 239,346 - -1.8 239,346 - +0.1 239,346 - -0.1 239,346 - -0.6 239,346 - -0.1 239,346 - +0.7 239,346 - -0.7 239,412 + -1.0 239,412 + -0.5 239,413 - -0.0 239,413 - +0.2 239,413 - -0.3 239,414 + -0.7 239,414 + +0.2 239,414 + +0.3 239,414 + +0.1 239,414 + +0.5 239,414 + -1.5 239,414 + -0.4 239,414 + +0.1 239,414 + +0.5 239,414 + -0.5 239,415 - +0.1 239,415 - -0.3 239,425 - -0.3 239,437 + -0.3 239,437 + -2.1 239,438 - -0.2 239,438 - +0.1 239,438 - +0.5 239,438 - +0.4 239,438 - -0.3 239,438 - -0.4 239,438 - -0.4 239,438 - -1.0 239,500 + -0.6 239,501 - -0.5 239,501 - -0.5 239,556 + -0.6 239,556 + -0.7 239,556 + -0.5 239,556 + -0.0 239,556 + -1.2 239,556 + -0.4 239,557 - -0.9 239,557 - -0.4 239,557 - +0.2 239,557 - -1.5 239,557 - -0.0 239,557 - +0.1 239,557 - -0.4 239,558 + +0.1 239,559 - +0.5 239,559 - +0.2 239,568 + -0.0 239,568 + -0.0 239,569 - -0.0 239,569 - -0.0 239,569 - +0.1 239,569 - -0.3 239,569 - -0.6 239,569 - -0.1 239,569 - +0.3 239,569 - -0.7 239,632 + +0.2 239,632 + -0.7 239,632 + -0.1 239,632 + -0.1 239,632 + -0.3 239,633 - +1.8 239,633 - -0.3 239,633 - -0.5 239,633 - -0.3 239,633 - -0.4 239,633 - -0.8 239,633 - -0.4 239,633 - -0.2 239,633 - -0.1 239,633 - +0.3 239,776 + -0.9 239,777 - +0.5 239,876 + -0.5 239,876 + -0.1 239,876 + +0.4 239,876 + +0.7 239,876 + +0.5 239,930 + +0.2 239,930 + +0.5
Or see this region's nucleotide sequence