Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08035

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08030 and ABIE51_RS08035 are separated by 148 nucleotidesABIE51_RS08035 and ABIE51_RS08040 are separated by 6 nucleotides ABIE51_RS08030: ABIE51_RS08030 - pantoate--beta-alanine ligase, at 1,707,944 to 1,708,792 _RS08030 ABIE51_RS08035: ABIE51_RS08035 - aspartate 1-decarboxylase, at 1,708,941 to 1,709,321 _RS08035 ABIE51_RS08040: ABIE51_RS08040 - glucose-6-phosphate isomerase, at 1,709,328 to 1,710,839 _RS08040 Position (kb) 1708 1709 1710Strain fitness (log2 ratio) -3 -2 -1 0 1at 1708.880 kb on + strandat 1708.880 kb on + strandat 1708.880 kb on + strandat 1708.880 kb on + strandat 1708.880 kb on + strandat 1708.881 kb on - strandat 1708.881 kb on - strandat 1709.458 kb on - strandat 1709.481 kb on + strand, within ABIE51_RS08040at 1709.481 kb on + strand, within ABIE51_RS08040at 1709.481 kb on + strand, within ABIE51_RS08040at 1709.482 kb on - strand, within ABIE51_RS08040at 1709.979 kb on + strand, within ABIE51_RS08040at 1709.979 kb on + strand, within ABIE51_RS08040at 1709.979 kb on + strand, within ABIE51_RS08040at 1710.073 kb on - strand, within ABIE51_RS08040at 1710.303 kb on + strand, within ABIE51_RS08040at 1710.304 kb on - strand, within ABIE51_RS08040at 1710.304 kb on - strand, within ABIE51_RS08040

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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1,708,880 + +0.1
1,708,880 + +0.2
1,708,880 + -1.6
1,708,880 + +0.7
1,708,880 + -0.1
1,708,881 - -0.5
1,708,881 - -0.8
1,709,458 - -0.1
1,709,481 + ABIE51_RS08040 0.10 -1.8
1,709,481 + ABIE51_RS08040 0.10 -3.7
1,709,481 + ABIE51_RS08040 0.10 -2.7
1,709,482 - ABIE51_RS08040 0.10 -1.8
1,709,979 + ABIE51_RS08040 0.43 -2.9
1,709,979 + ABIE51_RS08040 0.43 -2.2
1,709,979 + ABIE51_RS08040 0.43 -3.6
1,710,073 - ABIE51_RS08040 0.49 -0.6
1,710,303 + ABIE51_RS08040 0.64 -2.3
1,710,304 - ABIE51_RS08040 0.65 -2.5
1,710,304 - ABIE51_RS08040 0.65 -2.2

Or see this region's nucleotide sequence