Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS07165 and ABIE51_RS07170 are separated by 0 nucleotides ABIE51_RS07170 and ABIE51_RS07175 are separated by 89 nucleotides ABIE51_RS07175 and ABIE51_RS07180 overlap by 4 nucleotides ABIE51_RS07180 and ABIE51_RS07185 overlap by 1 nucleotides
ABIE51_RS07165: ABIE51_RS07165 - DnaB-like helicase C-terminal domain-containing protein, at 1,531,331 to 1,532,596
_RS07165
ABIE51_RS07170: ABIE51_RS07170 - hypothetical protein, at 1,532,597 to 1,532,800
_RS07170
ABIE51_RS07175: ABIE51_RS07175 - HNH endonuclease signature motif containing protein, at 1,532,890 to 1,533,228
_RS07175
ABIE51_RS07180: ABIE51_RS07180 - DNA cytosine methyltransferase, at 1,533,225 to 1,533,980
_RS07180
ABIE51_RS07185: ABIE51_RS07185 - DUF968 domain-containing protein, at 1,533,980 to 1,534,315
_RS07185
Position (kb) 1532
1533
1534 Strain fitness (log2 ratio) -1
0
1
2 at 1531.913 kb on - strand, within ABIE51_RS07165 at 1532.103 kb on + strand, within ABIE51_RS07165 at 1532.104 kb on - strand, within ABIE51_RS07165 at 1532.104 kb on - strand, within ABIE51_RS07165 at 1532.135 kb on + strand, within ABIE51_RS07165 at 1532.136 kb on - strand, within ABIE51_RS07165 at 1532.136 kb on - strand, within ABIE51_RS07165 at 1532.152 kb on - strand, within ABIE51_RS07165 at 1532.226 kb on - strand, within ABIE51_RS07165 at 1532.226 kb on - strand, within ABIE51_RS07165 at 1532.460 kb on - strand, within ABIE51_RS07165 at 1532.460 kb on - strand, within ABIE51_RS07165 at 1532.460 kb on - strand, within ABIE51_RS07165 at 1532.688 kb on - strand, within ABIE51_RS07170 at 1532.771 kb on - strand, within ABIE51_RS07170 at 1532.806 kb on - strand at 1532.823 kb on - strand at 1532.835 kb on - strand at 1532.894 kb on - strand at 1533.004 kb on - strand, within ABIE51_RS07175 at 1533.004 kb on - strand, within ABIE51_RS07175 at 1533.004 kb on - strand, within ABIE51_RS07175 at 1533.027 kb on - strand, within ABIE51_RS07175 at 1533.152 kb on - strand, within ABIE51_RS07175 at 1533.152 kb on - strand, within ABIE51_RS07175 at 1533.152 kb on - strand, within ABIE51_RS07175 at 1533.234 kb on + strand at 1533.234 kb on + strand at 1533.235 kb on - strand at 1533.238 kb on - strand at 1533.402 kb on + strand, within ABIE51_RS07180 at 1533.403 kb on - strand, within ABIE51_RS07180 at 1533.403 kb on - strand, within ABIE51_RS07180 at 1533.517 kb on + strand, within ABIE51_RS07180 at 1533.518 kb on - strand, within ABIE51_RS07180 at 1533.518 kb on - strand, within ABIE51_RS07180 at 1533.518 kb on - strand, within ABIE51_RS07180 at 1533.759 kb on - strand, within ABIE51_RS07180 at 1533.995 kb on + strand at 1534.041 kb on - strand, within ABIE51_RS07185 at 1534.105 kb on - strand, within ABIE51_RS07185 at 1534.105 kb on - strand, within ABIE51_RS07185 at 1534.105 kb on - strand, within ABIE51_RS07185
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 1,531,913 - ABIE51_RS07165 0.46 +0.4 1,532,103 + ABIE51_RS07165 0.61 +0.1 1,532,104 - ABIE51_RS07165 0.61 +0.9 1,532,104 - ABIE51_RS07165 0.61 -0.4 1,532,135 + ABIE51_RS07165 0.64 +1.1 1,532,136 - ABIE51_RS07165 0.64 -0.7 1,532,136 - ABIE51_RS07165 0.64 -0.8 1,532,152 - ABIE51_RS07165 0.65 -1.2 1,532,226 - ABIE51_RS07165 0.71 -0.4 1,532,226 - ABIE51_RS07165 0.71 -1.0 1,532,460 - ABIE51_RS07165 0.89 +0.2 1,532,460 - ABIE51_RS07165 0.89 +0.0 1,532,460 - ABIE51_RS07165 0.89 +1.9 1,532,688 - ABIE51_RS07170 0.45 +0.4 1,532,771 - ABIE51_RS07170 0.85 -0.2 1,532,806 - +0.4 1,532,823 - -0.1 1,532,835 - +0.3 1,532,894 - -0.3 1,533,004 - ABIE51_RS07175 0.34 +0.1 1,533,004 - ABIE51_RS07175 0.34 -1.4 1,533,004 - ABIE51_RS07175 0.34 +0.3 1,533,027 - ABIE51_RS07175 0.40 +0.7 1,533,152 - ABIE51_RS07175 0.77 +0.2 1,533,152 - ABIE51_RS07175 0.77 +0.4 1,533,152 - ABIE51_RS07175 0.77 +0.1 1,533,234 + -0.8 1,533,234 + +0.1 1,533,235 - +0.0 1,533,238 - +0.0 1,533,402 + ABIE51_RS07180 0.23 +0.1 1,533,403 - ABIE51_RS07180 0.24 +0.2 1,533,403 - ABIE51_RS07180 0.24 +0.3 1,533,517 + ABIE51_RS07180 0.39 -0.9 1,533,518 - ABIE51_RS07180 0.39 +0.5 1,533,518 - ABIE51_RS07180 0.39 -0.0 1,533,518 - ABIE51_RS07180 0.39 +0.2 1,533,759 - ABIE51_RS07180 0.71 +0.4 1,533,995 + -0.5 1,534,041 - ABIE51_RS07185 0.18 -0.1 1,534,105 - ABIE51_RS07185 0.37 +0.4 1,534,105 - ABIE51_RS07185 0.37 +0.2 1,534,105 - ABIE51_RS07185 0.37 +0.2
Or see this region's nucleotide sequence