Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04575 and ABIE51_RS04580 overlap by 4 nucleotides ABIE51_RS04580 and ABIE51_RS04585 overlap by 14 nucleotides ABIE51_RS04585 and ABIE51_RS04590 are separated by 3 nucleotides
ABIE51_RS04575: ABIE51_RS04575 - type II secretion system secretin GspD, at 988,423 to 990,649
_RS04575
ABIE51_RS04580: ABIE51_RS04580 - glycosyltransferase, at 990,646 to 991,503
_RS04580
ABIE51_RS04585: ABIE51_RS04585 - glycosyltransferase family 2 protein, at 991,490 to 992,353
_RS04585
ABIE51_RS04590: ABIE51_RS04590 - NCS2 family permease, at 992,357 to 993,700
_RS04590
Position (kb) 990
991
992 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 989.879 kb on + strand, within ABIE51_RS04575 at 989.880 kb on - strand, within ABIE51_RS04575 at 989.880 kb on - strand, within ABIE51_RS04575 at 990.191 kb on + strand, within ABIE51_RS04575 at 990.191 kb on + strand, within ABIE51_RS04575 at 990.191 kb on + strand, within ABIE51_RS04575 at 990.192 kb on - strand, within ABIE51_RS04575 at 990.581 kb on + strand at 990.582 kb on - strand at 990.859 kb on + strand, within ABIE51_RS04580 at 990.860 kb on - strand, within ABIE51_RS04580 at 991.228 kb on + strand, within ABIE51_RS04580 at 991.228 kb on + strand, within ABIE51_RS04580 at 991.228 kb on + strand, within ABIE51_RS04580 at 991.228 kb on + strand, within ABIE51_RS04580 at 991.228 kb on + strand, within ABIE51_RS04580 at 991.229 kb on - strand, within ABIE51_RS04580 at 991.229 kb on - strand, within ABIE51_RS04580 at 991.240 kb on + strand, within ABIE51_RS04580 at 991.405 kb on + strand, within ABIE51_RS04580 at 991.405 kb on + strand, within ABIE51_RS04580 at 991.405 kb on + strand, within ABIE51_RS04580 at 991.406 kb on - strand, within ABIE51_RS04580 at 991.538 kb on + strand at 992.455 kb on - strand at 992.494 kb on - strand, within ABIE51_RS04590
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 989,879 + ABIE51_RS04575 0.65 -0.9 989,880 - ABIE51_RS04575 0.65 -0.6 989,880 - ABIE51_RS04575 0.65 -0.7 990,191 + ABIE51_RS04575 0.79 -0.4 990,191 + ABIE51_RS04575 0.79 -0.4 990,191 + ABIE51_RS04575 0.79 -1.1 990,192 - ABIE51_RS04575 0.79 -0.1 990,581 + +0.2 990,582 - -0.7 990,859 + ABIE51_RS04580 0.25 +1.0 990,860 - ABIE51_RS04580 0.25 -0.0 991,228 + ABIE51_RS04580 0.68 -0.6 991,228 + ABIE51_RS04580 0.68 -0.6 991,228 + ABIE51_RS04580 0.68 +0.4 991,228 + ABIE51_RS04580 0.68 -0.1 991,228 + ABIE51_RS04580 0.68 +1.1 991,229 - ABIE51_RS04580 0.68 +0.5 991,229 - ABIE51_RS04580 0.68 +0.4 991,240 + ABIE51_RS04580 0.69 +0.4 991,405 + ABIE51_RS04580 0.88 +0.1 991,405 + ABIE51_RS04580 0.88 +0.1 991,405 + ABIE51_RS04580 0.88 +0.2 991,406 - ABIE51_RS04580 0.89 +0.2 991,538 + -4.6 992,455 - -1.0 992,494 - ABIE51_RS04590 0.10 +0.2
Or see this region's nucleotide sequence