Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10780 and HMPREF1078_RS10785 are separated by 1 nucleotides HMPREF1078_RS10785 and HMPREF1078_RS19630 are separated by 137 nucleotides HMPREF1078_RS19630 and HMPREF1078_RS10795 are separated by 65 nucleotides HMPREF1078_RS10795 and HMPREF1078_RS10800 are separated by 338 nucleotides
HMPREF1078_RS10780: HMPREF1078_RS10780 - capsule assembly Wzi family protein, at 65,508 to 66,989
_RS10780
HMPREF1078_RS10785: HMPREF1078_RS10785 - lysophospholipid acyltransferase family protein, at 66,991 to 67,728
_RS10785
HMPREF1078_RS19630: HMPREF1078_RS19630 - hypothetical protein, at 67,866 to 68,036
_RS19630
HMPREF1078_RS10795: HMPREF1078_RS10795 - DUF3467 domain-containing protein, at 68,102 to 68,410
_RS10795
HMPREF1078_RS10800: HMPREF1078_RS10800 - AraC family transcriptional regulator, at 68,749 to 69,630
_RS10800
Position (kb) 67
68
69 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 66.973 kb on + strand at 66.974 kb on - strand at 66.987 kb on + strand at 66.992 kb on + strand at 66.993 kb on - strand at 66.996 kb on + strand at 66.997 kb on - strand at 66.997 kb on - strand at 66.997 kb on - strand at 66.998 kb on + strand at 66.999 kb on - strand at 67.063 kb on - strand at 67.154 kb on - strand, within HMPREF1078_RS10785 at 67.193 kb on - strand, within HMPREF1078_RS10785 at 67.217 kb on + strand, within HMPREF1078_RS10785 at 67.230 kb on + strand, within HMPREF1078_RS10785 at 67.251 kb on + strand, within HMPREF1078_RS10785 at 67.253 kb on + strand, within HMPREF1078_RS10785 at 67.253 kb on + strand, within HMPREF1078_RS10785 at 67.253 kb on + strand, within HMPREF1078_RS10785 at 67.254 kb on - strand, within HMPREF1078_RS10785 at 67.257 kb on + strand, within HMPREF1078_RS10785 at 67.257 kb on + strand, within HMPREF1078_RS10785 at 67.277 kb on - strand, within HMPREF1078_RS10785 at 67.277 kb on - strand, within HMPREF1078_RS10785 at 67.305 kb on + strand, within HMPREF1078_RS10785 at 67.305 kb on + strand, within HMPREF1078_RS10785 at 67.326 kb on + strand, within HMPREF1078_RS10785 at 67.365 kb on + strand, within HMPREF1078_RS10785 at 67.365 kb on + strand, within HMPREF1078_RS10785 at 67.442 kb on - strand, within HMPREF1078_RS10785 at 67.442 kb on - strand, within HMPREF1078_RS10785 at 67.457 kb on + strand, within HMPREF1078_RS10785 at 67.458 kb on - strand, within HMPREF1078_RS10785 at 67.458 kb on - strand, within HMPREF1078_RS10785 at 67.459 kb on + strand, within HMPREF1078_RS10785 at 67.459 kb on + strand, within HMPREF1078_RS10785 at 67.459 kb on + strand, within HMPREF1078_RS10785 at 67.460 kb on - strand, within HMPREF1078_RS10785 at 67.460 kb on - strand, within HMPREF1078_RS10785 at 67.460 kb on - strand, within HMPREF1078_RS10785 at 67.461 kb on + strand, within HMPREF1078_RS10785 at 67.461 kb on + strand, within HMPREF1078_RS10785 at 67.461 kb on + strand, within HMPREF1078_RS10785 at 67.461 kb on + strand, within HMPREF1078_RS10785 at 67.462 kb on - strand, within HMPREF1078_RS10785 at 67.462 kb on - strand, within HMPREF1078_RS10785 at 67.468 kb on + strand, within HMPREF1078_RS10785 at 67.468 kb on + strand, within HMPREF1078_RS10785 at 67.469 kb on - strand, within HMPREF1078_RS10785 at 67.469 kb on - strand, within HMPREF1078_RS10785 at 67.501 kb on + strand, within HMPREF1078_RS10785 at 67.501 kb on + strand, within HMPREF1078_RS10785 at 67.501 kb on + strand, within HMPREF1078_RS10785 at 67.502 kb on - strand, within HMPREF1078_RS10785 at 67.502 kb on - strand, within HMPREF1078_RS10785 at 67.506 kb on - strand, within HMPREF1078_RS10785 at 67.522 kb on + strand, within HMPREF1078_RS10785 at 67.598 kb on + strand, within HMPREF1078_RS10785 at 67.602 kb on - strand, within HMPREF1078_RS10785 at 67.602 kb on - strand, within HMPREF1078_RS10785 at 67.610 kb on - strand, within HMPREF1078_RS10785 at 67.642 kb on - strand, within HMPREF1078_RS10785 at 67.661 kb on - strand at 67.661 kb on - strand at 67.670 kb on - strand at 67.700 kb on - strand at 67.700 kb on - strand at 67.703 kb on + strand at 67.704 kb on - strand at 67.710 kb on + strand at 67.710 kb on + strand at 67.710 kb on + strand at 67.710 kb on + strand at 67.710 kb on + strand at 67.710 kb on + strand at 67.711 kb on - strand at 67.711 kb on - strand at 67.711 kb on - strand at 67.711 kb on - strand at 67.712 kb on + strand at 67.712 kb on + strand at 67.712 kb on + strand at 67.712 kb on + strand at 67.713 kb on - strand at 67.713 kb on - strand at 67.713 kb on - strand at 67.713 kb on - strand at 67.713 kb on - strand at 67.723 kb on + strand at 67.723 kb on + strand at 67.723 kb on + strand at 67.723 kb on + strand at 67.723 kb on + strand at 67.723 kb on + strand at 67.724 kb on - strand at 67.724 kb on - strand at 67.728 kb on + strand at 67.728 kb on + strand at 67.728 kb on + strand at 67.728 kb on + strand at 67.729 kb on - strand at 67.729 kb on - strand at 67.729 kb on - strand at 67.729 kb on - strand at 67.729 kb on - strand at 67.729 kb on - strand at 67.730 kb on - strand at 67.731 kb on - strand at 67.731 kb on - strand at 67.731 kb on - strand at 67.731 kb on - strand at 67.731 kb on - strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.732 kb on + strand at 67.733 kb on - strand at 67.733 kb on - strand at 67.733 kb on - strand at 67.733 kb on - strand at 67.753 kb on - strand at 67.762 kb on - strand at 67.815 kb on + strand at 67.815 kb on + strand at 67.815 kb on + strand at 67.815 kb on + strand at 67.846 kb on + strand at 67.846 kb on + strand at 67.850 kb on + strand at 67.855 kb on + strand at 67.958 kb on + strand, within HMPREF1078_RS19630 at 67.959 kb on - strand, within HMPREF1078_RS19630 at 68.009 kb on + strand, within HMPREF1078_RS19630 at 68.009 kb on + strand, within HMPREF1078_RS19630 at 68.010 kb on - strand, within HMPREF1078_RS19630 at 68.016 kb on - strand, within HMPREF1078_RS19630 at 68.016 kb on - strand, within HMPREF1078_RS19630 at 68.017 kb on + strand, within HMPREF1078_RS19630 at 68.018 kb on - strand, within HMPREF1078_RS19630 at 68.046 kb on + strand at 68.046 kb on + strand at 68.046 kb on + strand at 68.047 kb on - strand at 68.053 kb on - strand at 68.085 kb on + strand at 68.086 kb on - strand at 68.161 kb on + strand, within HMPREF1078_RS10795 at 68.161 kb on + strand, within HMPREF1078_RS10795 at 68.161 kb on + strand, within HMPREF1078_RS10795 at 68.161 kb on + strand, within HMPREF1078_RS10795 at 68.194 kb on + strand, within HMPREF1078_RS10795 at 68.301 kb on - strand, within HMPREF1078_RS10795 at 68.301 kb on - strand, within HMPREF1078_RS10795 at 68.324 kb on + strand, within HMPREF1078_RS10795 at 68.324 kb on + strand, within HMPREF1078_RS10795 at 68.324 kb on + strand, within HMPREF1078_RS10795 at 68.325 kb on - strand, within HMPREF1078_RS10795 at 68.326 kb on + strand, within HMPREF1078_RS10795 at 68.326 kb on + strand, within HMPREF1078_RS10795 at 68.326 kb on + strand, within HMPREF1078_RS10795 at 68.326 kb on + strand, within HMPREF1078_RS10795 at 68.327 kb on - strand, within HMPREF1078_RS10795 at 68.327 kb on - strand, within HMPREF1078_RS10795 at 68.343 kb on + strand, within HMPREF1078_RS10795 at 68.343 kb on + strand, within HMPREF1078_RS10795 at 68.344 kb on - strand, within HMPREF1078_RS10795 at 68.344 kb on - strand, within HMPREF1078_RS10795 at 68.344 kb on - strand, within HMPREF1078_RS10795 at 68.344 kb on - strand, within HMPREF1078_RS10795 at 68.375 kb on + strand, within HMPREF1078_RS10795 at 68.375 kb on + strand, within HMPREF1078_RS10795 at 68.401 kb on + strand at 68.401 kb on + strand at 68.411 kb on - strand at 68.416 kb on + strand at 68.419 kb on + strand at 68.427 kb on + strand at 68.427 kb on + strand at 68.428 kb on - strand at 68.428 kb on - strand at 68.430 kb on - strand at 68.430 kb on - strand at 68.447 kb on + strand at 68.447 kb on + strand at 68.447 kb on + strand at 68.447 kb on + strand at 68.448 kb on - strand at 68.448 kb on - strand at 68.448 kb on - strand at 68.448 kb on - strand at 68.450 kb on - strand at 68.450 kb on - strand at 68.471 kb on - strand at 68.477 kb on + strand at 68.522 kb on + strand at 68.538 kb on - strand at 68.578 kb on + strand at 68.579 kb on - strand at 68.616 kb on + strand at 68.617 kb on - strand at 68.617 kb on - strand at 68.640 kb on - strand at 68.648 kb on - strand at 68.648 kb on - strand at 68.648 kb on - strand at 68.648 kb on - strand at 68.648 kb on - strand at 68.688 kb on - strand at 68.688 kb on - strand at 68.690 kb on - strand at 68.690 kb on - strand at 68.690 kb on - strand at 68.694 kb on + strand at 68.697 kb on + strand at 68.698 kb on - strand at 68.698 kb on - strand at 68.711 kb on + strand at 68.721 kb on - strand at 68.733 kb on - strand at 68.774 kb on + strand at 68.799 kb on + strand at 68.799 kb on + strand at 68.799 kb on + strand at 68.800 kb on - strand at 68.800 kb on - strand at 68.818 kb on - strand at 68.845 kb on - strand, within HMPREF1078_RS10800 at 68.859 kb on + strand, within HMPREF1078_RS10800 at 68.861 kb on + strand, within HMPREF1078_RS10800 at 68.866 kb on + strand, within HMPREF1078_RS10800 at 68.875 kb on + strand, within HMPREF1078_RS10800 at 68.876 kb on - strand, within HMPREF1078_RS10800 at 68.880 kb on + strand, within HMPREF1078_RS10800 at 68.880 kb on + strand, within HMPREF1078_RS10800 at 68.917 kb on + strand, within HMPREF1078_RS10800 at 68.918 kb on - strand, within HMPREF1078_RS10800 at 68.997 kb on + strand, within HMPREF1078_RS10800 at 69.001 kb on + strand, within HMPREF1078_RS10800 at 69.002 kb on - strand, within HMPREF1078_RS10800
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 66,973 + +0.2 66,974 - -0.9 66,987 + -0.7 66,992 + -0.5 66,993 - -1.0 66,996 + -1.3 66,997 - +0.1 66,997 - -0.9 66,997 - -0.9 66,998 + -1.9 66,999 - -2.2 67,063 - -0.5 67,154 - HMPREF1078_RS10785 0.22 -3.6 67,193 - HMPREF1078_RS10785 0.27 -1.6 67,217 + HMPREF1078_RS10785 0.31 +0.7 67,230 + HMPREF1078_RS10785 0.32 -4.8 67,251 + HMPREF1078_RS10785 0.35 -2.4 67,253 + HMPREF1078_RS10785 0.36 -2.6 67,253 + HMPREF1078_RS10785 0.36 +0.7 67,253 + HMPREF1078_RS10785 0.36 -1.3 67,254 - HMPREF1078_RS10785 0.36 -1.4 67,257 + HMPREF1078_RS10785 0.36 -0.5 67,257 + HMPREF1078_RS10785 0.36 -2.9 67,277 - HMPREF1078_RS10785 0.39 -0.3 67,277 - HMPREF1078_RS10785 0.39 -1.0 67,305 + HMPREF1078_RS10785 0.43 -2.7 67,305 + HMPREF1078_RS10785 0.43 -1.3 67,326 + HMPREF1078_RS10785 0.45 -3.2 67,365 + HMPREF1078_RS10785 0.51 -2.3 67,365 + HMPREF1078_RS10785 0.51 -0.3 67,442 - HMPREF1078_RS10785 0.61 -0.5 67,442 - HMPREF1078_RS10785 0.61 -1.9 67,457 + HMPREF1078_RS10785 0.63 -1.6 67,458 - HMPREF1078_RS10785 0.63 +0.7 67,458 - HMPREF1078_RS10785 0.63 -1.3 67,459 + HMPREF1078_RS10785 0.63 -2.0 67,459 + HMPREF1078_RS10785 0.63 -2.2 67,459 + HMPREF1078_RS10785 0.63 +0.7 67,460 - HMPREF1078_RS10785 0.64 -2.6 67,460 - HMPREF1078_RS10785 0.64 +0.7 67,460 - HMPREF1078_RS10785 0.64 -2.6 67,461 + HMPREF1078_RS10785 0.64 -3.0 67,461 + HMPREF1078_RS10785 0.64 -1.9 67,461 + HMPREF1078_RS10785 0.64 -2.6 67,461 + HMPREF1078_RS10785 0.64 -0.5 67,462 - HMPREF1078_RS10785 0.64 -1.0 67,462 - HMPREF1078_RS10785 0.64 -1.2 67,468 + HMPREF1078_RS10785 0.65 -2.2 67,468 + HMPREF1078_RS10785 0.65 -0.3 67,469 - HMPREF1078_RS10785 0.65 -3.6 67,469 - HMPREF1078_RS10785 0.65 -3.1 67,501 + HMPREF1078_RS10785 0.69 -2.3 67,501 + HMPREF1078_RS10785 0.69 -3.2 67,501 + HMPREF1078_RS10785 0.69 -1.5 67,502 - HMPREF1078_RS10785 0.69 -2.7 67,502 - HMPREF1078_RS10785 0.69 -2.5 67,506 - HMPREF1078_RS10785 0.70 -0.6 67,522 + HMPREF1078_RS10785 0.72 -1.7 67,598 + HMPREF1078_RS10785 0.82 -1.7 67,602 - HMPREF1078_RS10785 0.83 -3.3 67,602 - HMPREF1078_RS10785 0.83 -2.9 67,610 - HMPREF1078_RS10785 0.84 -0.9 67,642 - HMPREF1078_RS10785 0.88 -0.7 67,661 - -1.8 67,661 - -2.4 67,670 - -1.9 67,700 - -2.7 67,700 - -0.0 67,703 + -1.6 67,704 - +0.8 67,710 + -2.3 67,710 + -1.9 67,710 + -0.4 67,710 + +1.3 67,710 + -0.7 67,710 + -1.8 67,711 - -1.2 67,711 - -0.5 67,711 - -0.9 67,711 - -0.8 67,712 + -1.3 67,712 + -2.1 67,712 + -2.7 67,712 + -0.5 67,713 - -2.2 67,713 - -0.0 67,713 - -2.4 67,713 - -2.2 67,713 - -2.2 67,723 + -1.3 67,723 + +0.3 67,723 + -0.9 67,723 + -1.8 67,723 + -1.3 67,723 + -3.9 67,724 - -1.6 67,724 - -1.4 67,728 + -3.6 67,728 + -2.2 67,728 + -3.5 67,728 + -0.7 67,729 - +2.3 67,729 - +0.3 67,729 - +0.3 67,729 - -1.6 67,729 - +0.1 67,729 - -1.3 67,730 - -2.0 67,731 - -1.2 67,731 - -2.4 67,731 - +1.0 67,731 - -1.8 67,731 - -1.9 67,732 + -2.1 67,732 + -0.9 67,732 + -2.8 67,732 + -1.3 67,732 + -2.9 67,733 - -1.0 67,733 - -0.2 67,733 - -1.8 67,733 - -1.7 67,753 - -1.3 67,762 - -2.1 67,815 + -1.7 67,815 + -1.9 67,815 + -4.9 67,815 + -2.7 67,846 + -2.6 67,846 + -2.7 67,850 + -1.2 67,855 + -0.0 67,958 + HMPREF1078_RS19630 0.54 -0.3 67,959 - HMPREF1078_RS19630 0.54 +2.3 68,009 + HMPREF1078_RS19630 0.84 +1.3 68,009 + HMPREF1078_RS19630 0.84 -1.2 68,010 - HMPREF1078_RS19630 0.84 -1.3 68,016 - HMPREF1078_RS19630 0.88 -0.5 68,016 - HMPREF1078_RS19630 0.88 -1.0 68,017 + HMPREF1078_RS19630 0.88 -1.7 68,018 - HMPREF1078_RS19630 0.89 -2.3 68,046 + -2.6 68,046 + -3.0 68,046 + -2.6 68,047 - -2.6 68,053 - -0.9 68,085 + -0.2 68,086 - -0.3 68,161 + HMPREF1078_RS10795 0.19 -1.5 68,161 + HMPREF1078_RS10795 0.19 -0.8 68,161 + HMPREF1078_RS10795 0.19 +0.9 68,161 + HMPREF1078_RS10795 0.19 -1.4 68,194 + HMPREF1078_RS10795 0.30 -0.6 68,301 - HMPREF1078_RS10795 0.64 +0.9 68,301 - HMPREF1078_RS10795 0.64 -1.6 68,324 + HMPREF1078_RS10795 0.72 -2.0 68,324 + HMPREF1078_RS10795 0.72 -0.4 68,324 + HMPREF1078_RS10795 0.72 -1.6 68,325 - HMPREF1078_RS10795 0.72 +1.4 68,326 + HMPREF1078_RS10795 0.72 +0.9 68,326 + HMPREF1078_RS10795 0.72 -0.8 68,326 + HMPREF1078_RS10795 0.72 +0.3 68,326 + HMPREF1078_RS10795 0.72 -0.8 68,327 - HMPREF1078_RS10795 0.73 -0.5 68,327 - HMPREF1078_RS10795 0.73 -0.2 68,343 + HMPREF1078_RS10795 0.78 +0.3 68,343 + HMPREF1078_RS10795 0.78 -1.9 68,344 - HMPREF1078_RS10795 0.78 -1.6 68,344 - HMPREF1078_RS10795 0.78 -1.7 68,344 - HMPREF1078_RS10795 0.78 -0.5 68,344 - HMPREF1078_RS10795 0.78 -0.5 68,375 + HMPREF1078_RS10795 0.88 +1.3 68,375 + HMPREF1078_RS10795 0.88 -0.6 68,401 + +0.4 68,401 + +0.3 68,411 - +0.7 68,416 + -2.4 68,419 + +0.9 68,427 + -1.5 68,427 + -1.3 68,428 - +1.1 68,428 - -0.5 68,430 - -1.2 68,430 - -2.1 68,447 + +1.8 68,447 + -0.4 68,447 + +2.3 68,447 + -1.4 68,448 - +1.1 68,448 - -2.0 68,448 - -0.4 68,448 - -1.2 68,450 - +1.3 68,450 - +0.6 68,471 - -1.2 68,477 + -1.2 68,522 + +1.1 68,538 - +0.2 68,578 + +0.7 68,579 - -2.9 68,616 + +0.1 68,617 - +0.6 68,617 - +0.1 68,640 - -1.1 68,648 - +1.3 68,648 - +1.3 68,648 - -0.3 68,648 - +2.4 68,648 - +0.4 68,688 - -2.0 68,688 - +2.3 68,690 - -0.2 68,690 - -2.3 68,690 - +2.7 68,694 + +0.4 68,697 + +0.3 68,698 - -0.6 68,698 - -1.7 68,711 + -2.1 68,721 - -0.2 68,733 - -2.8 68,774 + +0.8 68,799 + -0.9 68,799 + +1.3 68,799 + -1.9 68,800 - -1.5 68,800 - +1.3 68,818 - +1.0 68,845 - HMPREF1078_RS10800 0.11 -0.2 68,859 + HMPREF1078_RS10800 0.12 +2.1 68,861 + HMPREF1078_RS10800 0.13 +0.1 68,866 + HMPREF1078_RS10800 0.13 -0.7 68,875 + HMPREF1078_RS10800 0.14 +1.6 68,876 - HMPREF1078_RS10800 0.14 +0.3 68,880 + HMPREF1078_RS10800 0.15 +2.8 68,880 + HMPREF1078_RS10800 0.15 -0.0 68,917 + HMPREF1078_RS10800 0.19 +0.6 68,918 - HMPREF1078_RS10800 0.19 +0.4 68,997 + HMPREF1078_RS10800 0.28 -1.2 69,001 + HMPREF1078_RS10800 0.29 +1.6 69,002 - HMPREF1078_RS10800 0.29 -0.6
Or see this region's nucleotide sequence