Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08765 and HMPREF1078_RS19190 are separated by 91 nucleotides HMPREF1078_RS19190 and HMPREF1078_RS19195 are separated by 30 nucleotides HMPREF1078_RS19195 and HMPREF1078_RS08780 are separated by 18 nucleotides HMPREF1078_RS08780 and HMPREF1078_RS08785 are separated by 156 nucleotides
HMPREF1078_RS08765: HMPREF1078_RS08765 - tRNA-Lys, at 338,894 to 338,966
_RS08765
HMPREF1078_RS19190: HMPREF1078_RS19190 - MBL fold metallo-hydrolase, at 339,058 to 339,861
_RS19190
HMPREF1078_RS19195: HMPREF1078_RS19195 - type I asparaginase, at 339,892 to 340,962
_RS19195
HMPREF1078_RS08780: HMPREF1078_RS08780 - trimeric intracellular cation channel family protein, at 340,981 to 341,592
_RS08780
HMPREF1078_RS08785: HMPREF1078_RS08785 - DUF3943 domain-containing protein, at 341,749 to 343,227
_RS08785
Position (kb) 339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 338.958 kb on + strand, within HMPREF1078_RS08765 at 338.975 kb on + strand at 339.074 kb on - strand at 339.165 kb on + strand, within HMPREF1078_RS19190 at 339.165 kb on + strand, within HMPREF1078_RS19190 at 339.166 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.186 kb on + strand, within HMPREF1078_RS19190 at 339.186 kb on + strand, within HMPREF1078_RS19190 at 339.217 kb on - strand, within HMPREF1078_RS19190 at 339.223 kb on + strand, within HMPREF1078_RS19190 at 339.224 kb on - strand, within HMPREF1078_RS19190 at 339.320 kb on + strand, within HMPREF1078_RS19190 at 339.361 kb on + strand, within HMPREF1078_RS19190 at 339.389 kb on + strand, within HMPREF1078_RS19190 at 339.390 kb on - strand, within HMPREF1078_RS19190 at 339.390 kb on - strand, within HMPREF1078_RS19190 at 339.393 kb on + strand, within HMPREF1078_RS19190 at 339.411 kb on + strand, within HMPREF1078_RS19190 at 339.436 kb on - strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.461 kb on + strand, within HMPREF1078_RS19190 at 339.461 kb on + strand, within HMPREF1078_RS19190 at 339.462 kb on - strand, within HMPREF1078_RS19190 at 339.462 kb on - strand, within HMPREF1078_RS19190 at 339.481 kb on - strand, within HMPREF1078_RS19190 at 339.483 kb on + strand, within HMPREF1078_RS19190 at 339.484 kb on - strand, within HMPREF1078_RS19190 at 339.508 kb on - strand, within HMPREF1078_RS19190 at 339.528 kb on + strand, within HMPREF1078_RS19190 at 339.637 kb on - strand, within HMPREF1078_RS19190 at 339.661 kb on + strand, within HMPREF1078_RS19190 at 339.661 kb on + strand, within HMPREF1078_RS19190 at 339.672 kb on + strand, within HMPREF1078_RS19190 at 339.757 kb on - strand, within HMPREF1078_RS19190 at 339.812 kb on + strand at 339.838 kb on + strand at 339.839 kb on - strand at 339.894 kb on - strand at 340.036 kb on + strand, within HMPREF1078_RS19195 at 340.037 kb on - strand, within HMPREF1078_RS19195 at 340.060 kb on - strand, within HMPREF1078_RS19195 at 340.060 kb on - strand, within HMPREF1078_RS19195 at 340.112 kb on - strand, within HMPREF1078_RS19195 at 340.117 kb on + strand, within HMPREF1078_RS19195 at 340.118 kb on - strand, within HMPREF1078_RS19195 at 340.173 kb on - strand, within HMPREF1078_RS19195 at 340.173 kb on - strand, within HMPREF1078_RS19195 at 340.343 kb on + strand, within HMPREF1078_RS19195 at 340.344 kb on - strand, within HMPREF1078_RS19195 at 340.344 kb on - strand, within HMPREF1078_RS19195 at 340.344 kb on - strand, within HMPREF1078_RS19195 at 340.362 kb on - strand, within HMPREF1078_RS19195 at 340.362 kb on - strand, within HMPREF1078_RS19195 at 340.366 kb on + strand, within HMPREF1078_RS19195 at 340.366 kb on + strand, within HMPREF1078_RS19195 at 340.366 kb on + strand, within HMPREF1078_RS19195 at 340.366 kb on + strand, within HMPREF1078_RS19195 at 340.366 kb on + strand, within HMPREF1078_RS19195 at 340.367 kb on - strand, within HMPREF1078_RS19195 at 340.367 kb on - strand, within HMPREF1078_RS19195 at 340.367 kb on - strand, within HMPREF1078_RS19195 at 340.370 kb on + strand, within HMPREF1078_RS19195 at 340.371 kb on - strand, within HMPREF1078_RS19195 at 340.371 kb on - strand, within HMPREF1078_RS19195 at 340.375 kb on - strand, within HMPREF1078_RS19195 at 340.375 kb on - strand, within HMPREF1078_RS19195 at 340.446 kb on + strand, within HMPREF1078_RS19195 at 340.575 kb on + strand, within HMPREF1078_RS19195 at 340.615 kb on - strand, within HMPREF1078_RS19195 at 340.618 kb on + strand, within HMPREF1078_RS19195 at 340.619 kb on - strand, within HMPREF1078_RS19195 at 340.697 kb on + strand, within HMPREF1078_RS19195 at 340.726 kb on + strand, within HMPREF1078_RS19195 at 340.727 kb on - strand, within HMPREF1078_RS19195 at 340.802 kb on + strand, within HMPREF1078_RS19195 at 340.828 kb on - strand, within HMPREF1078_RS19195 at 340.828 kb on - strand, within HMPREF1078_RS19195 at 340.828 kb on - strand, within HMPREF1078_RS19195 at 340.830 kb on + strand, within HMPREF1078_RS19195 at 340.891 kb on - strand at 340.911 kb on - strand at 340.911 kb on - strand at 340.911 kb on - strand at 340.948 kb on + strand at 340.949 kb on - strand at 340.977 kb on - strand at 340.983 kb on - strand at 340.997 kb on - strand at 340.997 kb on - strand at 341.011 kb on + strand at 341.011 kb on + strand at 341.011 kb on + strand at 341.012 kb on - strand at 341.014 kb on - strand at 341.014 kb on - strand at 341.018 kb on + strand at 341.064 kb on + strand, within HMPREF1078_RS08780 at 341.099 kb on - strand, within HMPREF1078_RS08780 at 341.112 kb on - strand, within HMPREF1078_RS08780 at 341.116 kb on - strand, within HMPREF1078_RS08780 at 341.116 kb on - strand, within HMPREF1078_RS08780 at 341.149 kb on - strand, within HMPREF1078_RS08780 at 341.218 kb on - strand, within HMPREF1078_RS08780 at 341.329 kb on - strand, within HMPREF1078_RS08780 at 341.340 kb on + strand, within HMPREF1078_RS08780 at 341.341 kb on - strand, within HMPREF1078_RS08780 at 341.341 kb on - strand, within HMPREF1078_RS08780 at 341.356 kb on + strand, within HMPREF1078_RS08780 at 341.390 kb on - strand, within HMPREF1078_RS08780 at 341.399 kb on + strand, within HMPREF1078_RS08780 at 341.399 kb on + strand, within HMPREF1078_RS08780 at 341.400 kb on - strand, within HMPREF1078_RS08780 at 341.400 kb on - strand, within HMPREF1078_RS08780 at 341.400 kb on - strand, within HMPREF1078_RS08780 at 341.400 kb on - strand, within HMPREF1078_RS08780 at 341.455 kb on - strand, within HMPREF1078_RS08780 at 341.464 kb on + strand, within HMPREF1078_RS08780 at 341.489 kb on + strand, within HMPREF1078_RS08780 at 341.489 kb on + strand, within HMPREF1078_RS08780 at 341.490 kb on - strand, within HMPREF1078_RS08780 at 341.577 kb on + strand at 341.578 kb on - strand at 341.578 kb on - strand at 341.587 kb on + strand at 341.588 kb on - strand at 341.613 kb on + strand at 341.643 kb on + strand at 341.644 kb on - strand at 341.660 kb on - strand at 341.660 kb on - strand at 341.663 kb on + strand at 341.664 kb on - strand at 341.692 kb on - strand at 341.695 kb on + strand at 341.696 kb on - strand at 341.696 kb on - strand at 341.696 kb on - strand at 341.701 kb on + strand at 341.701 kb on + strand at 341.701 kb on + strand at 341.732 kb on - strand at 341.736 kb on - strand at 341.736 kb on - strand at 341.736 kb on - strand at 341.760 kb on + strand at 341.815 kb on + strand at 341.815 kb on + strand at 341.815 kb on + strand at 341.815 kb on + strand at 341.815 kb on + strand at 341.815 kb on + strand at 341.815 kb on + strand at 341.815 kb on + strand at 341.816 kb on - strand at 341.816 kb on - strand at 341.816 kb on - strand at 341.816 kb on - strand at 341.817 kb on + strand at 341.817 kb on + strand at 341.817 kb on + strand at 341.818 kb on - strand at 341.818 kb on - strand at 341.818 kb on - strand at 341.819 kb on + strand at 341.820 kb on - strand at 341.830 kb on - strand at 341.844 kb on + strand at 341.844 kb on + strand at 341.844 kb on + strand at 341.845 kb on - strand at 341.845 kb on - strand at 341.861 kb on + strand at 341.862 kb on - strand at 341.913 kb on + strand, within HMPREF1078_RS08785 at 341.914 kb on - strand, within HMPREF1078_RS08785 at 341.938 kb on + strand, within HMPREF1078_RS08785 at 341.940 kb on + strand, within HMPREF1078_RS08785 at 341.940 kb on + strand, within HMPREF1078_RS08785 at 341.945 kb on + strand, within HMPREF1078_RS08785
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 338,958 + HMPREF1078_RS08765 0.88 +1.0 338,975 + +0.8 339,074 - -1.0 339,165 + HMPREF1078_RS19190 0.13 -0.6 339,165 + HMPREF1078_RS19190 0.13 -1.4 339,166 - HMPREF1078_RS19190 0.13 -1.6 339,168 - HMPREF1078_RS19190 0.14 +2.4 339,168 - HMPREF1078_RS19190 0.14 -1.5 339,168 - HMPREF1078_RS19190 0.14 -1.8 339,168 - HMPREF1078_RS19190 0.14 +0.3 339,186 + HMPREF1078_RS19190 0.16 +0.1 339,186 + HMPREF1078_RS19190 0.16 +1.4 339,217 - HMPREF1078_RS19190 0.20 -1.2 339,223 + HMPREF1078_RS19190 0.21 -1.5 339,224 - HMPREF1078_RS19190 0.21 -2.0 339,320 + HMPREF1078_RS19190 0.33 -0.9 339,361 + HMPREF1078_RS19190 0.38 +0.8 339,389 + HMPREF1078_RS19190 0.41 -0.6 339,390 - HMPREF1078_RS19190 0.41 -1.0 339,390 - HMPREF1078_RS19190 0.41 -1.0 339,393 + HMPREF1078_RS19190 0.42 -1.2 339,411 + HMPREF1078_RS19190 0.44 +0.8 339,436 - HMPREF1078_RS19190 0.47 +2.4 339,441 + HMPREF1078_RS19190 0.48 +0.8 339,441 + HMPREF1078_RS19190 0.48 +0.2 339,441 + HMPREF1078_RS19190 0.48 +2.4 339,441 + HMPREF1078_RS19190 0.48 +0.4 339,461 + HMPREF1078_RS19190 0.50 -0.9 339,461 + HMPREF1078_RS19190 0.50 -0.6 339,462 - HMPREF1078_RS19190 0.50 -0.2 339,462 - HMPREF1078_RS19190 0.50 +0.1 339,481 - HMPREF1078_RS19190 0.53 -0.4 339,483 + HMPREF1078_RS19190 0.53 -0.8 339,484 - HMPREF1078_RS19190 0.53 -1.2 339,508 - HMPREF1078_RS19190 0.56 +0.8 339,528 + HMPREF1078_RS19190 0.58 +1.2 339,637 - HMPREF1078_RS19190 0.72 +1.4 339,661 + HMPREF1078_RS19190 0.75 -0.8 339,661 + HMPREF1078_RS19190 0.75 +0.7 339,672 + HMPREF1078_RS19190 0.76 -0.5 339,757 - HMPREF1078_RS19190 0.87 +0.6 339,812 + +1.4 339,838 + -1.8 339,839 - -1.0 339,894 - -2.2 340,036 + HMPREF1078_RS19195 0.13 -1.4 340,037 - HMPREF1078_RS19195 0.14 +1.6 340,060 - HMPREF1078_RS19195 0.16 +0.8 340,060 - HMPREF1078_RS19195 0.16 +1.0 340,112 - HMPREF1078_RS19195 0.21 -0.5 340,117 + HMPREF1078_RS19195 0.21 -0.2 340,118 - HMPREF1078_RS19195 0.21 -1.0 340,173 - HMPREF1078_RS19195 0.26 -0.6 340,173 - HMPREF1078_RS19195 0.26 +1.4 340,343 + HMPREF1078_RS19195 0.42 -0.6 340,344 - HMPREF1078_RS19195 0.42 -0.1 340,344 - HMPREF1078_RS19195 0.42 +1.4 340,344 - HMPREF1078_RS19195 0.42 +2.4 340,362 - HMPREF1078_RS19195 0.44 +1.4 340,362 - HMPREF1078_RS19195 0.44 -1.7 340,366 + HMPREF1078_RS19195 0.44 -0.2 340,366 + HMPREF1078_RS19195 0.44 +0.1 340,366 + HMPREF1078_RS19195 0.44 -1.8 340,366 + HMPREF1078_RS19195 0.44 -0.8 340,366 + HMPREF1078_RS19195 0.44 -0.4 340,367 - HMPREF1078_RS19195 0.44 -2.3 340,367 - HMPREF1078_RS19195 0.44 -1.0 340,367 - HMPREF1078_RS19195 0.44 +0.8 340,370 + HMPREF1078_RS19195 0.45 -1.0 340,371 - HMPREF1078_RS19195 0.45 -0.4 340,371 - HMPREF1078_RS19195 0.45 -0.9 340,375 - HMPREF1078_RS19195 0.45 +1.1 340,375 - HMPREF1078_RS19195 0.45 -2.0 340,446 + HMPREF1078_RS19195 0.52 -0.8 340,575 + HMPREF1078_RS19195 0.64 +1.8 340,615 - HMPREF1078_RS19195 0.68 -2.0 340,618 + HMPREF1078_RS19195 0.68 +1.4 340,619 - HMPREF1078_RS19195 0.68 +1.2 340,697 + HMPREF1078_RS19195 0.75 -0.6 340,726 + HMPREF1078_RS19195 0.78 -0.9 340,727 - HMPREF1078_RS19195 0.78 +0.5 340,802 + HMPREF1078_RS19195 0.85 -0.4 340,828 - HMPREF1078_RS19195 0.87 -1.7 340,828 - HMPREF1078_RS19195 0.87 +0.4 340,828 - HMPREF1078_RS19195 0.87 +0.6 340,830 + HMPREF1078_RS19195 0.88 +0.4 340,891 - -0.2 340,911 - -1.3 340,911 - -1.5 340,911 - +2.4 340,948 + +0.4 340,949 - +0.8 340,977 - -1.2 340,983 - -0.9 340,997 - -0.1 340,997 - +0.7 341,011 + -1.0 341,011 + -0.2 341,011 + -0.4 341,012 - -0.4 341,014 - -0.4 341,014 - -0.0 341,018 + -1.0 341,064 + HMPREF1078_RS08780 0.14 +1.0 341,099 - HMPREF1078_RS08780 0.19 +1.7 341,112 - HMPREF1078_RS08780 0.21 -2.2 341,116 - HMPREF1078_RS08780 0.22 -1.0 341,116 - HMPREF1078_RS08780 0.22 +0.8 341,149 - HMPREF1078_RS08780 0.27 +0.6 341,218 - HMPREF1078_RS08780 0.39 +2.7 341,329 - HMPREF1078_RS08780 0.57 -0.2 341,340 + HMPREF1078_RS08780 0.59 +1.4 341,341 - HMPREF1078_RS08780 0.59 -0.3 341,341 - HMPREF1078_RS08780 0.59 +0.2 341,356 + HMPREF1078_RS08780 0.61 +0.8 341,390 - HMPREF1078_RS08780 0.67 +0.1 341,399 + HMPREF1078_RS08780 0.68 -0.8 341,399 + HMPREF1078_RS08780 0.68 -1.2 341,400 - HMPREF1078_RS08780 0.68 +0.1 341,400 - HMPREF1078_RS08780 0.68 -1.5 341,400 - HMPREF1078_RS08780 0.68 -1.2 341,400 - HMPREF1078_RS08780 0.68 +0.1 341,455 - HMPREF1078_RS08780 0.77 +0.6 341,464 + HMPREF1078_RS08780 0.79 +0.4 341,489 + HMPREF1078_RS08780 0.83 -2.3 341,489 + HMPREF1078_RS08780 0.83 +0.7 341,490 - HMPREF1078_RS08780 0.83 -0.6 341,577 + -0.8 341,578 - +0.4 341,578 - -0.4 341,587 + -1.0 341,588 - -0.0 341,613 + +0.1 341,643 + -0.8 341,644 - -1.2 341,660 - +0.8 341,660 - +1.4 341,663 + -0.8 341,664 - -0.6 341,692 - +1.4 341,695 + +0.1 341,696 - +1.2 341,696 - +1.1 341,696 - -0.8 341,701 + -0.4 341,701 + -0.9 341,701 + +0.4 341,732 - +1.1 341,736 - -1.2 341,736 - +1.0 341,736 - -1.7 341,760 + +0.4 341,815 + -0.8 341,815 + +1.4 341,815 + -3.0 341,815 + +3.4 341,815 + +0.7 341,815 + -0.4 341,815 + -0.2 341,815 + -1.8 341,816 - -0.7 341,816 - -1.0 341,816 - +1.4 341,816 - +0.8 341,817 + +3.4 341,817 + -0.5 341,817 + +0.4 341,818 - -1.5 341,818 - -0.2 341,818 - +0.2 341,819 + -0.6 341,820 - -0.5 341,830 - -0.3 341,844 + +0.8 341,844 + -0.7 341,844 + -0.2 341,845 - -1.0 341,845 - +0.2 341,861 + -1.0 341,862 - -0.6 341,913 + HMPREF1078_RS08785 0.11 -1.6 341,914 - HMPREF1078_RS08785 0.11 -0.4 341,938 + HMPREF1078_RS08785 0.13 +0.4 341,940 + HMPREF1078_RS08785 0.13 +0.4 341,940 + HMPREF1078_RS08785 0.13 -0.0 341,945 + HMPREF1078_RS08785 0.13 +1.1
Or see this region's nucleotide sequence