Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17695 and HMPREF1078_RS17700 are separated by 56 nucleotides HMPREF1078_RS17700 and HMPREF1078_RS17705 are separated by 12 nucleotides HMPREF1078_RS17705 and HMPREF1078_RS17710 are separated by 171 nucleotides
HMPREF1078_RS17695: HMPREF1078_RS17695 - adenosylcobinamide-phosphate synthase CbiB, at 103,479 to 104,432
_RS17695
HMPREF1078_RS17700: HMPREF1078_RS17700 - HAMP domain-containing sensor histidine kinase, at 104,489 to 105,775
_RS17700
HMPREF1078_RS17705: HMPREF1078_RS17705 - response regulator transcription factor, at 105,788 to 106,474
_RS17705
HMPREF1078_RS17710: HMPREF1078_RS17710 - fumarate hydratase, at 106,646 to 108,286
_RS17710
Position (kb) 104
105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.491 kb on + strand at 103.497 kb on + strand at 103.497 kb on + strand at 103.497 kb on + strand at 103.498 kb on - strand at 103.501 kb on - strand at 103.511 kb on + strand at 103.601 kb on - strand, within HMPREF1078_RS17695 at 103.601 kb on - strand, within HMPREF1078_RS17695 at 103.793 kb on + strand, within HMPREF1078_RS17695 at 103.794 kb on - strand, within HMPREF1078_RS17695 at 103.840 kb on - strand, within HMPREF1078_RS17695 at 103.840 kb on - strand, within HMPREF1078_RS17695 at 103.843 kb on + strand, within HMPREF1078_RS17695 at 103.881 kb on - strand, within HMPREF1078_RS17695 at 103.881 kb on - strand, within HMPREF1078_RS17695 at 104.077 kb on - strand, within HMPREF1078_RS17695 at 104.156 kb on + strand, within HMPREF1078_RS17695 at 104.156 kb on + strand, within HMPREF1078_RS17695 at 104.156 kb on + strand, within HMPREF1078_RS17695 at 104.163 kb on + strand, within HMPREF1078_RS17695 at 104.163 kb on + strand, within HMPREF1078_RS17695 at 104.163 kb on + strand, within HMPREF1078_RS17695 at 104.163 kb on + strand, within HMPREF1078_RS17695 at 104.164 kb on - strand, within HMPREF1078_RS17695 at 104.215 kb on + strand, within HMPREF1078_RS17695 at 104.233 kb on - strand, within HMPREF1078_RS17695 at 104.428 kb on + strand at 104.429 kb on - strand at 104.432 kb on + strand at 104.432 kb on + strand at 104.432 kb on + strand at 104.466 kb on - strand at 104.525 kb on - strand at 104.565 kb on + strand at 104.650 kb on + strand, within HMPREF1078_RS17700 at 104.650 kb on + strand, within HMPREF1078_RS17700 at 104.692 kb on + strand, within HMPREF1078_RS17700 at 104.861 kb on + strand, within HMPREF1078_RS17700 at 104.861 kb on + strand, within HMPREF1078_RS17700 at 104.861 kb on + strand, within HMPREF1078_RS17700 at 104.871 kb on + strand, within HMPREF1078_RS17700 at 104.872 kb on - strand, within HMPREF1078_RS17700 at 104.872 kb on - strand, within HMPREF1078_RS17700 at 104.872 kb on - strand, within HMPREF1078_RS17700 at 104.969 kb on - strand, within HMPREF1078_RS17700 at 104.985 kb on + strand, within HMPREF1078_RS17700 at 104.985 kb on + strand, within HMPREF1078_RS17700 at 104.986 kb on - strand, within HMPREF1078_RS17700 at 104.986 kb on - strand, within HMPREF1078_RS17700 at 104.995 kb on + strand, within HMPREF1078_RS17700 at 104.996 kb on - strand, within HMPREF1078_RS17700 at 104.996 kb on - strand, within HMPREF1078_RS17700 at 105.140 kb on + strand, within HMPREF1078_RS17700 at 105.140 kb on + strand, within HMPREF1078_RS17700 at 105.247 kb on - strand, within HMPREF1078_RS17700 at 105.273 kb on + strand, within HMPREF1078_RS17700 at 105.273 kb on + strand, within HMPREF1078_RS17700 at 105.342 kb on + strand, within HMPREF1078_RS17700 at 105.343 kb on - strand, within HMPREF1078_RS17700 at 105.377 kb on + strand, within HMPREF1078_RS17700 at 105.423 kb on + strand, within HMPREF1078_RS17700 at 105.492 kb on - strand, within HMPREF1078_RS17700 at 105.493 kb on + strand, within HMPREF1078_RS17700 at 105.493 kb on + strand, within HMPREF1078_RS17700 at 105.493 kb on + strand, within HMPREF1078_RS17700 at 105.493 kb on + strand, within HMPREF1078_RS17700 at 105.493 kb on + strand, within HMPREF1078_RS17700 at 105.493 kb on + strand, within HMPREF1078_RS17700 at 105.494 kb on - strand, within HMPREF1078_RS17700 at 105.494 kb on - strand, within HMPREF1078_RS17700 at 105.494 kb on - strand, within HMPREF1078_RS17700 at 105.495 kb on + strand, within HMPREF1078_RS17700 at 105.496 kb on - strand, within HMPREF1078_RS17700 at 105.496 kb on - strand, within HMPREF1078_RS17700 at 105.496 kb on - strand, within HMPREF1078_RS17700 at 105.496 kb on - strand, within HMPREF1078_RS17700 at 105.497 kb on + strand, within HMPREF1078_RS17700 at 105.497 kb on + strand, within HMPREF1078_RS17700 at 105.497 kb on + strand, within HMPREF1078_RS17700 at 105.498 kb on - strand, within HMPREF1078_RS17700 at 105.568 kb on - strand, within HMPREF1078_RS17700 at 105.568 kb on - strand, within HMPREF1078_RS17700 at 105.744 kb on - strand at 105.758 kb on - strand at 105.809 kb on + strand at 105.829 kb on - strand at 105.866 kb on + strand, within HMPREF1078_RS17705 at 105.973 kb on + strand, within HMPREF1078_RS17705 at 105.973 kb on + strand, within HMPREF1078_RS17705 at 105.974 kb on - strand, within HMPREF1078_RS17705 at 106.183 kb on - strand, within HMPREF1078_RS17705 at 106.348 kb on - strand, within HMPREF1078_RS17705 at 106.401 kb on + strand, within HMPREF1078_RS17705 at 106.401 kb on + strand, within HMPREF1078_RS17705 at 106.401 kb on + strand, within HMPREF1078_RS17705 at 106.402 kb on - strand, within HMPREF1078_RS17705 at 106.402 kb on - strand, within HMPREF1078_RS17705 at 106.460 kb on + strand at 106.464 kb on - strand at 106.467 kb on - strand at 106.475 kb on - strand at 106.478 kb on + strand at 106.486 kb on + strand at 106.575 kb on + strand at 106.621 kb on + strand at 106.631 kb on + strand at 106.631 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 103,491 + -0.3 103,497 + +0.7 103,497 + -1.0 103,497 + +0.5 103,498 - -1.2 103,501 - -0.5 103,511 + -1.3 103,601 - HMPREF1078_RS17695 0.13 +2.3 103,601 - HMPREF1078_RS17695 0.13 +0.3 103,793 + HMPREF1078_RS17695 0.33 +2.4 103,794 - HMPREF1078_RS17695 0.33 -1.0 103,840 - HMPREF1078_RS17695 0.38 -0.0 103,840 - HMPREF1078_RS17695 0.38 -0.0 103,843 + HMPREF1078_RS17695 0.38 +1.3 103,881 - HMPREF1078_RS17695 0.42 +2.3 103,881 - HMPREF1078_RS17695 0.42 +0.7 104,077 - HMPREF1078_RS17695 0.63 +0.3 104,156 + HMPREF1078_RS17695 0.71 +1.3 104,156 + HMPREF1078_RS17695 0.71 -0.1 104,156 + HMPREF1078_RS17695 0.71 -0.2 104,163 + HMPREF1078_RS17695 0.72 -0.4 104,163 + HMPREF1078_RS17695 0.72 -2.2 104,163 + HMPREF1078_RS17695 0.72 -1.6 104,163 + HMPREF1078_RS17695 0.72 -2.4 104,164 - HMPREF1078_RS17695 0.72 -0.9 104,215 + HMPREF1078_RS17695 0.77 -1.2 104,233 - HMPREF1078_RS17695 0.79 +0.3 104,428 + +0.4 104,429 - +2.0 104,432 + -1.1 104,432 + +0.7 104,432 + -0.3 104,466 - +0.7 104,525 - -1.7 104,565 + -2.0 104,650 + HMPREF1078_RS17700 0.13 -1.5 104,650 + HMPREF1078_RS17700 0.13 -0.3 104,692 + HMPREF1078_RS17700 0.16 -1.0 104,861 + HMPREF1078_RS17700 0.29 +2.3 104,861 + HMPREF1078_RS17700 0.29 -1.3 104,861 + HMPREF1078_RS17700 0.29 -1.5 104,871 + HMPREF1078_RS17700 0.30 -0.9 104,872 - HMPREF1078_RS17700 0.30 -0.0 104,872 - HMPREF1078_RS17700 0.30 -0.5 104,872 - HMPREF1078_RS17700 0.30 -0.5 104,969 - HMPREF1078_RS17700 0.37 -1.3 104,985 + HMPREF1078_RS17700 0.39 +0.3 104,985 + HMPREF1078_RS17700 0.39 -1.0 104,986 - HMPREF1078_RS17700 0.39 -1.8 104,986 - HMPREF1078_RS17700 0.39 +1.3 104,995 + HMPREF1078_RS17700 0.39 -1.9 104,996 - HMPREF1078_RS17700 0.39 -2.6 104,996 - HMPREF1078_RS17700 0.39 -2.2 105,140 + HMPREF1078_RS17700 0.51 -2.1 105,140 + HMPREF1078_RS17700 0.51 -1.7 105,247 - HMPREF1078_RS17700 0.59 -1.2 105,273 + HMPREF1078_RS17700 0.61 -1.8 105,273 + HMPREF1078_RS17700 0.61 -0.7 105,342 + HMPREF1078_RS17700 0.66 -1.4 105,343 - HMPREF1078_RS17700 0.66 -2.7 105,377 + HMPREF1078_RS17700 0.69 -2.2 105,423 + HMPREF1078_RS17700 0.73 -2.9 105,492 - HMPREF1078_RS17700 0.78 -1.3 105,493 + HMPREF1078_RS17700 0.78 -2.3 105,493 + HMPREF1078_RS17700 0.78 +0.3 105,493 + HMPREF1078_RS17700 0.78 -2.7 105,493 + HMPREF1078_RS17700 0.78 -1.7 105,493 + HMPREF1078_RS17700 0.78 -2.7 105,493 + HMPREF1078_RS17700 0.78 -0.7 105,494 - HMPREF1078_RS17700 0.78 -1.5 105,494 - HMPREF1078_RS17700 0.78 -3.0 105,494 - HMPREF1078_RS17700 0.78 -0.9 105,495 + HMPREF1078_RS17700 0.78 -0.9 105,496 - HMPREF1078_RS17700 0.78 -3.1 105,496 - HMPREF1078_RS17700 0.78 -0.5 105,496 - HMPREF1078_RS17700 0.78 -1.5 105,496 - HMPREF1078_RS17700 0.78 -0.0 105,497 + HMPREF1078_RS17700 0.78 +0.3 105,497 + HMPREF1078_RS17700 0.78 +0.3 105,497 + HMPREF1078_RS17700 0.78 -1.3 105,498 - HMPREF1078_RS17700 0.78 -1.5 105,568 - HMPREF1078_RS17700 0.84 -0.0 105,568 - HMPREF1078_RS17700 0.84 -1.2 105,744 - -1.6 105,758 - +0.3 105,809 + -1.1 105,829 - -0.5 105,866 + HMPREF1078_RS17705 0.11 +0.4 105,973 + HMPREF1078_RS17705 0.27 -0.1 105,973 + HMPREF1078_RS17705 0.27 -0.7 105,974 - HMPREF1078_RS17705 0.27 -1.4 106,183 - HMPREF1078_RS17705 0.57 +2.0 106,348 - HMPREF1078_RS17705 0.82 +1.3 106,401 + HMPREF1078_RS17705 0.89 -0.0 106,401 + HMPREF1078_RS17705 0.89 -0.6 106,401 + HMPREF1078_RS17705 0.89 +0.5 106,402 - HMPREF1078_RS17705 0.89 -3.6 106,402 - HMPREF1078_RS17705 0.89 +0.5 106,460 + +0.3 106,464 - -2.2 106,467 - -0.7 106,475 - +0.5 106,478 + -0.6 106,486 + -0.0 106,575 + -2.8 106,621 + -0.7 106,631 + +0.6 106,631 + -0.3
Or see this region's nucleotide sequence