Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17375 and HMPREF1078_RS17380 are separated by 108 nucleotides HMPREF1078_RS17380 and HMPREF1078_RS17385 are separated by 45 nucleotides
HMPREF1078_RS17375: HMPREF1078_RS17375 - ABC transporter permease, at 28,858 to 30,078
_RS17375
HMPREF1078_RS17380: HMPREF1078_RS17380 - ABC transporter ATP-binding protein, at 30,187 to 30,927
_RS17380
HMPREF1078_RS17385: HMPREF1078_RS17385 - efflux RND transporter periplasmic adaptor subunit, at 30,973 to 32,205
_RS17385
Position (kb) 30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 29.188 kb on + strand, within HMPREF1078_RS17375 at 29.188 kb on + strand, within HMPREF1078_RS17375 at 29.342 kb on - strand, within HMPREF1078_RS17375 at 29.342 kb on - strand, within HMPREF1078_RS17375 at 29.375 kb on + strand, within HMPREF1078_RS17375 at 29.400 kb on + strand, within HMPREF1078_RS17375 at 29.400 kb on + strand, within HMPREF1078_RS17375 at 29.400 kb on + strand, within HMPREF1078_RS17375 at 29.401 kb on - strand, within HMPREF1078_RS17375 at 29.401 kb on - strand, within HMPREF1078_RS17375 at 29.458 kb on + strand, within HMPREF1078_RS17375 at 29.459 kb on - strand, within HMPREF1078_RS17375 at 29.549 kb on - strand, within HMPREF1078_RS17375 at 29.676 kb on - strand, within HMPREF1078_RS17375 at 29.711 kb on + strand, within HMPREF1078_RS17375 at 29.712 kb on - strand, within HMPREF1078_RS17375 at 30.083 kb on - strand at 30.094 kb on - strand at 30.340 kb on - strand, within HMPREF1078_RS17380 at 30.391 kb on - strand, within HMPREF1078_RS17380 at 30.766 kb on + strand, within HMPREF1078_RS17380 at 30.767 kb on - strand, within HMPREF1078_RS17380 at 30.928 kb on - strand at 30.957 kb on + strand at 30.958 kb on - strand at 30.958 kb on - strand at 30.959 kb on + strand at 30.961 kb on + strand at 30.974 kb on + strand at 31.192 kb on + strand, within HMPREF1078_RS17385 at 31.378 kb on - strand, within HMPREF1078_RS17385 at 31.541 kb on - strand, within HMPREF1078_RS17385 at 31.781 kb on + strand, within HMPREF1078_RS17385 at 31.782 kb on - strand, within HMPREF1078_RS17385
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 29,188 + HMPREF1078_RS17375 0.27 +0.1 29,188 + HMPREF1078_RS17375 0.27 -0.5 29,342 - HMPREF1078_RS17375 0.40 -1.1 29,342 - HMPREF1078_RS17375 0.40 -0.3 29,375 + HMPREF1078_RS17375 0.42 +1.3 29,400 + HMPREF1078_RS17375 0.44 +0.7 29,400 + HMPREF1078_RS17375 0.44 -2.2 29,400 + HMPREF1078_RS17375 0.44 +0.7 29,401 - HMPREF1078_RS17375 0.44 -0.7 29,401 - HMPREF1078_RS17375 0.44 -1.9 29,458 + HMPREF1078_RS17375 0.49 +0.3 29,459 - HMPREF1078_RS17375 0.49 +3.0 29,549 - HMPREF1078_RS17375 0.57 +0.1 29,676 - HMPREF1078_RS17375 0.67 +0.3 29,711 + HMPREF1078_RS17375 0.70 +2.3 29,712 - HMPREF1078_RS17375 0.70 -3.7 30,083 - -0.3 30,094 - +1.3 30,340 - HMPREF1078_RS17380 0.21 +2.3 30,391 - HMPREF1078_RS17380 0.28 -0.5 30,766 + HMPREF1078_RS17380 0.78 -2.3 30,767 - HMPREF1078_RS17380 0.78 -2.3 30,928 - -0.7 30,957 + +1.1 30,958 - +2.7 30,958 - -0.5 30,959 + -1.3 30,961 + -0.6 30,974 + -1.7 31,192 + HMPREF1078_RS17385 0.18 +0.7 31,378 - HMPREF1078_RS17385 0.33 -1.7 31,541 - HMPREF1078_RS17385 0.46 -2.1 31,781 + HMPREF1078_RS17385 0.66 +1.0 31,782 - HMPREF1078_RS17385 0.66 +0.7
Or see this region's nucleotide sequence