Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16705

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS16700 and HMPREF1078_RS16705 are separated by 97 nucleotidesHMPREF1078_RS16705 and HMPREF1078_RS16710 are separated by 29 nucleotides HMPREF1078_RS16700: HMPREF1078_RS16700 - PatB family C-S lyase, at 54,879 to 56,054 _RS16700 HMPREF1078_RS16705: HMPREF1078_RS16705 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 56,152 to 56,730 _RS16705 HMPREF1078_RS16710: HMPREF1078_RS16710 - chorismate synthase, at 56,760 to 57,830 _RS16710 Position (kb) 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 55.152 kb on - strand, within HMPREF1078_RS16700at 55.157 kb on + strand, within HMPREF1078_RS16700at 55.157 kb on + strand, within HMPREF1078_RS16700at 55.158 kb on - strand, within HMPREF1078_RS16700at 55.222 kb on + strand, within HMPREF1078_RS16700at 55.242 kb on + strand, within HMPREF1078_RS16700at 55.242 kb on + strand, within HMPREF1078_RS16700at 55.309 kb on + strand, within HMPREF1078_RS16700at 55.320 kb on + strand, within HMPREF1078_RS16700at 55.394 kb on + strand, within HMPREF1078_RS16700at 55.463 kb on + strand, within HMPREF1078_RS16700at 55.464 kb on - strand, within HMPREF1078_RS16700at 55.464 kb on - strand, within HMPREF1078_RS16700at 55.465 kb on + strand, within HMPREF1078_RS16700at 55.465 kb on + strand, within HMPREF1078_RS16700at 55.487 kb on - strand, within HMPREF1078_RS16700at 55.514 kb on + strand, within HMPREF1078_RS16700at 55.515 kb on - strand, within HMPREF1078_RS16700at 55.566 kb on - strand, within HMPREF1078_RS16700at 55.704 kb on + strand, within HMPREF1078_RS16700at 55.727 kb on + strand, within HMPREF1078_RS16700at 55.727 kb on + strand, within HMPREF1078_RS16700at 55.727 kb on + strand, within HMPREF1078_RS16700at 55.728 kb on - strand, within HMPREF1078_RS16700at 55.728 kb on - strand, within HMPREF1078_RS16700at 55.731 kb on + strand, within HMPREF1078_RS16700at 55.764 kb on + strand, within HMPREF1078_RS16700at 55.764 kb on + strand, within HMPREF1078_RS16700at 55.764 kb on + strand, within HMPREF1078_RS16700at 55.764 kb on + strand, within HMPREF1078_RS16700at 55.764 kb on + strand, within HMPREF1078_RS16700at 55.764 kb on + strand, within HMPREF1078_RS16700at 55.764 kb on + strand, within HMPREF1078_RS16700at 55.765 kb on - strand, within HMPREF1078_RS16700at 55.765 kb on - strand, within HMPREF1078_RS16700at 55.765 kb on - strand, within HMPREF1078_RS16700at 55.765 kb on - strand, within HMPREF1078_RS16700at 55.765 kb on - strand, within HMPREF1078_RS16700at 55.767 kb on - strand, within HMPREF1078_RS16700at 55.798 kb on - strand, within HMPREF1078_RS16700at 55.856 kb on - strand, within HMPREF1078_RS16700at 55.900 kb on + strand, within HMPREF1078_RS16700at 55.901 kb on - strand, within HMPREF1078_RS16700at 55.917 kb on - strand, within HMPREF1078_RS16700at 55.974 kb on - strandat 55.974 kb on - strandat 56.045 kb on + strandat 56.111 kb on + strandat 56.128 kb on + strandat 56.137 kb on + strandat 56.169 kb on + strandat 56.169 kb on + strandat 56.184 kb on + strandat 56.188 kb on + strandat 56.188 kb on + strandat 56.258 kb on - strand, within HMPREF1078_RS16705at 56.321 kb on + strand, within HMPREF1078_RS16705at 56.334 kb on + strand, within HMPREF1078_RS16705at 56.362 kb on + strand, within HMPREF1078_RS16705at 56.371 kb on + strand, within HMPREF1078_RS16705at 56.371 kb on + strand, within HMPREF1078_RS16705at 56.371 kb on + strand, within HMPREF1078_RS16705at 56.387 kb on + strand, within HMPREF1078_RS16705at 56.388 kb on - strand, within HMPREF1078_RS16705at 56.418 kb on - strand, within HMPREF1078_RS16705at 56.490 kb on + strand, within HMPREF1078_RS16705at 56.513 kb on + strand, within HMPREF1078_RS16705at 56.513 kb on + strand, within HMPREF1078_RS16705at 56.753 kb on - strandat 56.765 kb on + strandat 56.765 kb on + strandat 56.766 kb on - strandat 56.780 kb on - strandat 56.781 kb on + strandat 56.781 kb on + strandat 56.782 kb on - strandat 56.830 kb on + strandat 56.831 kb on - strandat 56.831 kb on - strandat 56.834 kb on - strandat 56.860 kb on + strandat 56.860 kb on + strandat 56.861 kb on - strandat 56.864 kb on + strandat 56.865 kb on - strandat 56.873 kb on + strand, within HMPREF1078_RS16710at 56.873 kb on + strand, within HMPREF1078_RS16710at 56.947 kb on + strand, within HMPREF1078_RS16710at 56.963 kb on + strand, within HMPREF1078_RS16710at 56.967 kb on + strand, within HMPREF1078_RS16710at 56.967 kb on + strand, within HMPREF1078_RS16710at 56.968 kb on - strand, within HMPREF1078_RS16710at 56.968 kb on - strand, within HMPREF1078_RS16710at 57.036 kb on + strand, within HMPREF1078_RS16710at 57.036 kb on + strand, within HMPREF1078_RS16710at 57.041 kb on + strand, within HMPREF1078_RS16710at 57.044 kb on + strand, within HMPREF1078_RS16710at 57.044 kb on + strand, within HMPREF1078_RS16710at 57.044 kb on + strand, within HMPREF1078_RS16710at 57.044 kb on + strand, within HMPREF1078_RS16710at 57.044 kb on + strand, within HMPREF1078_RS16710at 57.057 kb on + strand, within HMPREF1078_RS16710at 57.079 kb on + strand, within HMPREF1078_RS16710at 57.079 kb on - strand, within HMPREF1078_RS16710at 57.097 kb on - strand, within HMPREF1078_RS16710at 57.097 kb on - strand, within HMPREF1078_RS16710at 57.208 kb on + strand, within HMPREF1078_RS16710at 57.209 kb on - strand, within HMPREF1078_RS16710at 57.255 kb on + strand, within HMPREF1078_RS16710at 57.264 kb on + strand, within HMPREF1078_RS16710at 57.296 kb on - strand, within HMPREF1078_RS16710at 57.366 kb on - strand, within HMPREF1078_RS16710at 57.428 kb on - strand, within HMPREF1078_RS16710at 57.495 kb on + strand, within HMPREF1078_RS16710at 57.521 kb on - strand, within HMPREF1078_RS16710at 57.522 kb on + strand, within HMPREF1078_RS16710at 57.581 kb on + strand, within HMPREF1078_RS16710at 57.601 kb on + strand, within HMPREF1078_RS16710at 57.602 kb on - strand, within HMPREF1078_RS16710at 57.611 kb on + strand, within HMPREF1078_RS16710at 57.611 kb on + strand, within HMPREF1078_RS16710at 57.629 kb on + strand, within HMPREF1078_RS16710at 57.633 kb on + strand, within HMPREF1078_RS16710at 57.633 kb on + strand, within HMPREF1078_RS16710at 57.633 kb on + strand, within HMPREF1078_RS16710at 57.634 kb on - strand, within HMPREF1078_RS16710at 57.693 kb on - strand, within HMPREF1078_RS16710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
remove
55,152 - HMPREF1078_RS16700 0.23 +0.0
55,157 + HMPREF1078_RS16700 0.24 +0.0
55,157 + HMPREF1078_RS16700 0.24 -1.0
55,158 - HMPREF1078_RS16700 0.24 +0.6
55,222 + HMPREF1078_RS16700 0.29 -0.2
55,242 + HMPREF1078_RS16700 0.31 +2.4
55,242 + HMPREF1078_RS16700 0.31 +1.9
55,309 + HMPREF1078_RS16700 0.37 -1.8
55,320 + HMPREF1078_RS16700 0.38 -0.7
55,394 + HMPREF1078_RS16700 0.44 -0.6
55,463 + HMPREF1078_RS16700 0.50 +0.8
55,464 - HMPREF1078_RS16700 0.50 +1.4
55,464 - HMPREF1078_RS16700 0.50 -1.5
55,465 + HMPREF1078_RS16700 0.50 +0.4
55,465 + HMPREF1078_RS16700 0.50 -0.6
55,487 - HMPREF1078_RS16700 0.52 +1.4
55,514 + HMPREF1078_RS16700 0.54 -0.8
55,515 - HMPREF1078_RS16700 0.54 -0.2
55,566 - HMPREF1078_RS16700 0.58 +1.4
55,704 + HMPREF1078_RS16700 0.70 +1.4
55,727 + HMPREF1078_RS16700 0.72 +1.9
55,727 + HMPREF1078_RS16700 0.72 -0.4
55,727 + HMPREF1078_RS16700 0.72 -1.1
55,728 - HMPREF1078_RS16700 0.72 +0.2
55,728 - HMPREF1078_RS16700 0.72 +0.4
55,731 + HMPREF1078_RS16700 0.72 -1.2
55,764 + HMPREF1078_RS16700 0.75 +0.8
55,764 + HMPREF1078_RS16700 0.75 -1.2
55,764 + HMPREF1078_RS16700 0.75 -0.6
55,764 + HMPREF1078_RS16700 0.75 +0.4
55,764 + HMPREF1078_RS16700 0.75 -0.4
55,764 + HMPREF1078_RS16700 0.75 -2.4
55,764 + HMPREF1078_RS16700 0.75 +1.4
55,765 - HMPREF1078_RS16700 0.75 -1.5
55,765 - HMPREF1078_RS16700 0.75 -0.1
55,765 - HMPREF1078_RS16700 0.75 -0.8
55,765 - HMPREF1078_RS16700 0.75 -1.9
55,765 - HMPREF1078_RS16700 0.75 -0.2
55,767 - HMPREF1078_RS16700 0.76 -1.6
55,798 - HMPREF1078_RS16700 0.78 +2.4
55,856 - HMPREF1078_RS16700 0.83 -1.5
55,900 + HMPREF1078_RS16700 0.87 -1.1
55,901 - HMPREF1078_RS16700 0.87 +3.4
55,917 - HMPREF1078_RS16700 0.88 -1.6
55,974 - +0.4
55,974 - -0.8
56,045 + -2.4
56,111 + -1.4
56,128 + +0.0
56,137 + -1.0
56,169 + -1.0
56,169 + -1.2
56,184 + -0.4
56,188 + +0.8
56,188 + -1.3
56,258 - HMPREF1078_RS16705 0.18 +1.4
56,321 + HMPREF1078_RS16705 0.29 -1.5
56,334 + HMPREF1078_RS16705 0.31 -2.8
56,362 + HMPREF1078_RS16705 0.36 -0.8
56,371 + HMPREF1078_RS16705 0.38 -2.2
56,371 + HMPREF1078_RS16705 0.38 +1.4
56,371 + HMPREF1078_RS16705 0.38 +1.1
56,387 + HMPREF1078_RS16705 0.41 +0.4
56,388 - HMPREF1078_RS16705 0.41 +1.4
56,418 - HMPREF1078_RS16705 0.46 +0.8
56,490 + HMPREF1078_RS16705 0.58 -0.2
56,513 + HMPREF1078_RS16705 0.62 -0.5
56,513 + HMPREF1078_RS16705 0.62 +1.4
56,753 - +1.4
56,765 + +0.0
56,765 + +0.4
56,766 - +0.0
56,780 - +1.4
56,781 + -0.8
56,781 + +2.4
56,782 - -1.0
56,830 + -1.3
56,831 - +0.0
56,831 - +2.4
56,834 - +1.4
56,860 + +0.4
56,860 + +0.8
56,861 - +0.8
56,864 + +1.4
56,865 - +0.8
56,873 + HMPREF1078_RS16710 0.11 +0.4
56,873 + HMPREF1078_RS16710 0.11 -0.4
56,947 + HMPREF1078_RS16710 0.17 -0.4
56,963 + HMPREF1078_RS16710 0.19 -2.9
56,967 + HMPREF1078_RS16710 0.19 +0.0
56,967 + HMPREF1078_RS16710 0.19 +1.4
56,968 - HMPREF1078_RS16710 0.19 +1.4
56,968 - HMPREF1078_RS16710 0.19 +1.4
57,036 + HMPREF1078_RS16710 0.26 +1.4
57,036 + HMPREF1078_RS16710 0.26 +0.4
57,041 + HMPREF1078_RS16710 0.26 +0.8
57,044 + HMPREF1078_RS16710 0.27 -0.8
57,044 + HMPREF1078_RS16710 0.27 -0.2
57,044 + HMPREF1078_RS16710 0.27 +0.4
57,044 + HMPREF1078_RS16710 0.27 +1.4
57,044 + HMPREF1078_RS16710 0.27 +2.4
57,057 + HMPREF1078_RS16710 0.28 +2.4
57,079 + HMPREF1078_RS16710 0.30 -0.4
57,079 - HMPREF1078_RS16710 0.30 +0.0
57,097 - HMPREF1078_RS16710 0.31 +1.4
57,097 - HMPREF1078_RS16710 0.31 -0.2
57,208 + HMPREF1078_RS16710 0.42 +0.8
57,209 - HMPREF1078_RS16710 0.42 -0.4
57,255 + HMPREF1078_RS16710 0.46 -0.4
57,264 + HMPREF1078_RS16710 0.47 -0.2
57,296 - HMPREF1078_RS16710 0.50 +0.8
57,366 - HMPREF1078_RS16710 0.57 -0.2
57,428 - HMPREF1078_RS16710 0.62 +2.4
57,495 + HMPREF1078_RS16710 0.69 -0.2
57,521 - HMPREF1078_RS16710 0.71 +0.8
57,522 + HMPREF1078_RS16710 0.71 -0.8
57,581 + HMPREF1078_RS16710 0.77 +1.4
57,601 + HMPREF1078_RS16710 0.79 +2.4
57,602 - HMPREF1078_RS16710 0.79 +2.4
57,611 + HMPREF1078_RS16710 0.79 +0.4
57,611 + HMPREF1078_RS16710 0.79 +0.4
57,629 + HMPREF1078_RS16710 0.81 -0.2
57,633 + HMPREF1078_RS16710 0.82 +1.4
57,633 + HMPREF1078_RS16710 0.82 +1.4
57,633 + HMPREF1078_RS16710 0.82 +0.8
57,634 - HMPREF1078_RS16710 0.82 +0.4
57,693 - HMPREF1078_RS16710 0.87 -0.6

Or see this region's nucleotide sequence