Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15815 and HMPREF1078_RS15820 are separated by 271 nucleotides HMPREF1078_RS15820 and HMPREF1078_RS15825 are separated by 14 nucleotides HMPREF1078_RS15825 and HMPREF1078_RS15830 are separated by 18 nucleotides HMPREF1078_RS15830 and HMPREF1078_RS15835 are separated by 93 nucleotides
HMPREF1078_RS15815: HMPREF1078_RS15815 - tRNA-Met, at 279,892 to 279,963
_RS15815
HMPREF1078_RS15820: HMPREF1078_RS15820 - TetR/AcrR family transcriptional regulator, at 280,235 to 280,822
_RS15820
HMPREF1078_RS15825: HMPREF1078_RS15825 - ketoacyl-ACP synthase III, at 280,837 to 281,781
_RS15825
HMPREF1078_RS15830: HMPREF1078_RS15830 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 281,800 to 282,546
_RS15830
HMPREF1078_RS15835: HMPREF1078_RS15835 - pseudouridine synthase, at 282,640 to 283,317
_RS15835
Position (kb) 280
281
282 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 279.885 kb on + strand at 279.915 kb on - strand, within HMPREF1078_RS15815 at 279.944 kb on + strand, within HMPREF1078_RS15815 at 279.967 kb on + strand at 279.967 kb on + strand at 279.967 kb on + strand at 280.001 kb on + strand at 280.122 kb on + strand at 280.123 kb on - strand at 280.129 kb on - strand at 280.129 kb on - strand at 280.131 kb on + strand at 280.156 kb on + strand at 280.171 kb on + strand at 280.224 kb on + strand at 280.246 kb on + strand at 280.309 kb on + strand, within HMPREF1078_RS15820 at 280.309 kb on + strand, within HMPREF1078_RS15820 at 280.361 kb on + strand, within HMPREF1078_RS15820 at 280.361 kb on + strand, within HMPREF1078_RS15820 at 280.361 kb on + strand, within HMPREF1078_RS15820 at 280.367 kb on + strand, within HMPREF1078_RS15820 at 280.367 kb on + strand, within HMPREF1078_RS15820 at 280.427 kb on + strand, within HMPREF1078_RS15820 at 280.549 kb on + strand, within HMPREF1078_RS15820 at 280.620 kb on + strand, within HMPREF1078_RS15820 at 280.727 kb on + strand, within HMPREF1078_RS15820 at 280.727 kb on + strand, within HMPREF1078_RS15820 at 280.727 kb on + strand, within HMPREF1078_RS15820 at 280.729 kb on + strand, within HMPREF1078_RS15820 at 280.729 kb on + strand, within HMPREF1078_RS15820 at 280.750 kb on + strand, within HMPREF1078_RS15820 at 280.753 kb on + strand, within HMPREF1078_RS15820 at 280.753 kb on + strand, within HMPREF1078_RS15820 at 280.785 kb on + strand at 280.785 kb on + strand at 280.797 kb on + strand at 280.807 kb on + strand at 280.809 kb on + strand at 280.815 kb on + strand at 280.828 kb on + strand at 280.828 kb on + strand at 280.828 kb on + strand at 280.828 kb on + strand at 280.842 kb on + strand at 280.861 kb on + strand at 280.865 kb on + strand at 280.865 kb on + strand at 280.904 kb on + strand at 280.986 kb on + strand, within HMPREF1078_RS15825 at 281.010 kb on + strand, within HMPREF1078_RS15825 at 281.022 kb on + strand, within HMPREF1078_RS15825 at 281.037 kb on + strand, within HMPREF1078_RS15825 at 281.048 kb on + strand, within HMPREF1078_RS15825 at 281.071 kb on + strand, within HMPREF1078_RS15825 at 281.263 kb on + strand, within HMPREF1078_RS15825 at 281.266 kb on + strand, within HMPREF1078_RS15825 at 281.268 kb on + strand, within HMPREF1078_RS15825 at 281.374 kb on + strand, within HMPREF1078_RS15825 at 281.392 kb on + strand, within HMPREF1078_RS15825 at 281.484 kb on + strand, within HMPREF1078_RS15825 at 281.490 kb on + strand, within HMPREF1078_RS15825 at 281.490 kb on + strand, within HMPREF1078_RS15825 at 281.509 kb on + strand, within HMPREF1078_RS15825 at 281.532 kb on + strand, within HMPREF1078_RS15825 at 281.532 kb on + strand, within HMPREF1078_RS15825 at 281.551 kb on + strand, within HMPREF1078_RS15825 at 281.574 kb on + strand, within HMPREF1078_RS15825 at 281.574 kb on + strand, within HMPREF1078_RS15825 at 281.580 kb on + strand, within HMPREF1078_RS15825 at 281.592 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.681 kb on + strand, within HMPREF1078_RS15825 at 281.683 kb on + strand, within HMPREF1078_RS15825 at 281.749 kb on + strand at 281.754 kb on + strand at 281.754 kb on + strand at 282.545 kb on - strand at 282.554 kb on + strand at 282.555 kb on - strand at 282.562 kb on - strand at 282.575 kb on + strand at 282.575 kb on + strand at 282.576 kb on - strand at 282.576 kb on - strand at 282.576 kb on - strand at 282.579 kb on + strand at 282.580 kb on - strand at 282.621 kb on - strand at 282.648 kb on + strand at 282.653 kb on - strand at 282.666 kb on + strand at 282.667 kb on - strand at 282.667 kb on - strand at 282.681 kb on + strand at 282.681 kb on + strand at 282.702 kb on - strand at 282.724 kb on - strand, within HMPREF1078_RS15835 at 282.724 kb on - strand, within HMPREF1078_RS15835 at 282.766 kb on + strand, within HMPREF1078_RS15835 at 282.766 kb on + strand, within HMPREF1078_RS15835 at 282.766 kb on + strand, within HMPREF1078_RS15835 at 282.766 kb on + strand, within HMPREF1078_RS15835 at 282.766 kb on + strand, within HMPREF1078_RS15835 at 282.767 kb on - strand, within HMPREF1078_RS15835 at 282.767 kb on - strand, within HMPREF1078_RS15835 at 282.767 kb on - strand, within HMPREF1078_RS15835
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 279,885 + +0.7 279,915 - HMPREF1078_RS15815 0.32 -0.6 279,944 + HMPREF1078_RS15815 0.72 +1.4 279,967 + -1.2 279,967 + -0.2 279,967 + +0.8 280,001 + +1.1 280,122 + +0.1 280,123 - -1.2 280,129 - +0.1 280,129 - -1.3 280,131 + -0.4 280,156 + -0.2 280,171 + -1.3 280,224 + +2.4 280,246 + -1.5 280,309 + HMPREF1078_RS15820 0.13 -0.9 280,309 + HMPREF1078_RS15820 0.13 -0.8 280,361 + HMPREF1078_RS15820 0.21 +0.8 280,361 + HMPREF1078_RS15820 0.21 -1.1 280,361 + HMPREF1078_RS15820 0.21 +0.1 280,367 + HMPREF1078_RS15820 0.22 -1.5 280,367 + HMPREF1078_RS15820 0.22 -2.4 280,427 + HMPREF1078_RS15820 0.33 -1.8 280,549 + HMPREF1078_RS15820 0.53 +0.0 280,620 + HMPREF1078_RS15820 0.65 -0.0 280,727 + HMPREF1078_RS15820 0.84 -1.2 280,727 + HMPREF1078_RS15820 0.84 +0.2 280,727 + HMPREF1078_RS15820 0.84 +1.4 280,729 + HMPREF1078_RS15820 0.84 +1.1 280,729 + HMPREF1078_RS15820 0.84 +0.9 280,750 + HMPREF1078_RS15820 0.88 +0.8 280,753 + HMPREF1078_RS15820 0.88 +0.8 280,753 + HMPREF1078_RS15820 0.88 -1.1 280,785 + -0.5 280,785 + -0.7 280,797 + -0.7 280,807 + -0.7 280,809 + -1.4 280,815 + -1.5 280,828 + -2.0 280,828 + -2.5 280,828 + -1.2 280,828 + -0.9 280,842 + -3.0 280,861 + -2.2 280,865 + +0.1 280,865 + -0.2 280,904 + -3.8 280,986 + HMPREF1078_RS15825 0.16 -3.3 281,010 + HMPREF1078_RS15825 0.18 -1.1 281,022 + HMPREF1078_RS15825 0.20 -2.1 281,037 + HMPREF1078_RS15825 0.21 +0.8 281,048 + HMPREF1078_RS15825 0.22 -2.3 281,071 + HMPREF1078_RS15825 0.25 -3.3 281,263 + HMPREF1078_RS15825 0.45 -3.1 281,266 + HMPREF1078_RS15825 0.45 -2.6 281,268 + HMPREF1078_RS15825 0.46 -0.9 281,374 + HMPREF1078_RS15825 0.57 -1.8 281,392 + HMPREF1078_RS15825 0.59 -0.8 281,484 + HMPREF1078_RS15825 0.68 -1.5 281,490 + HMPREF1078_RS15825 0.69 -1.7 281,490 + HMPREF1078_RS15825 0.69 -1.9 281,509 + HMPREF1078_RS15825 0.71 -2.6 281,532 + HMPREF1078_RS15825 0.74 +1.4 281,532 + HMPREF1078_RS15825 0.74 -2.4 281,551 + HMPREF1078_RS15825 0.76 -0.6 281,574 + HMPREF1078_RS15825 0.78 -2.5 281,574 + HMPREF1078_RS15825 0.78 -1.7 281,580 + HMPREF1078_RS15825 0.79 -0.2 281,592 + HMPREF1078_RS15825 0.80 -3.1 281,681 + HMPREF1078_RS15825 0.89 -2.4 281,681 + HMPREF1078_RS15825 0.89 -1.6 281,681 + HMPREF1078_RS15825 0.89 -1.4 281,681 + HMPREF1078_RS15825 0.89 -0.6 281,681 + HMPREF1078_RS15825 0.89 -0.9 281,681 + HMPREF1078_RS15825 0.89 -3.6 281,681 + HMPREF1078_RS15825 0.89 -0.9 281,681 + HMPREF1078_RS15825 0.89 -2.8 281,681 + HMPREF1078_RS15825 0.89 -1.8 281,683 + HMPREF1078_RS15825 0.90 -2.1 281,749 + -0.2 281,754 + -1.8 281,754 + +0.8 282,545 - -0.4 282,554 + +0.4 282,555 - -0.4 282,562 - +0.5 282,575 + +0.4 282,575 + -0.4 282,576 - +2.4 282,576 - +0.8 282,576 - +0.1 282,579 + -0.8 282,580 - -1.9 282,621 - -1.7 282,648 + -1.2 282,653 - +0.4 282,666 + -0.2 282,667 - -1.1 282,667 - +0.4 282,681 + -0.2 282,681 + -0.8 282,702 - -0.2 282,724 - HMPREF1078_RS15835 0.12 +0.9 282,724 - HMPREF1078_RS15835 0.12 -0.4 282,766 + HMPREF1078_RS15835 0.19 -0.3 282,766 + HMPREF1078_RS15835 0.19 -0.4 282,766 + HMPREF1078_RS15835 0.19 -0.7 282,766 + HMPREF1078_RS15835 0.19 -0.4 282,766 + HMPREF1078_RS15835 0.19 -0.4 282,767 - HMPREF1078_RS15835 0.19 -0.4 282,767 - HMPREF1078_RS15835 0.19 +0.4 282,767 - HMPREF1078_RS15835 0.19 -0.6
Or see this region's nucleotide sequence