Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15710 and HMPREF1078_RS15715 are separated by 39 nucleotides HMPREF1078_RS15715 and HMPREF1078_RS20075 are separated by 45 nucleotides HMPREF1078_RS20075 and HMPREF1078_RS15720 are separated by 241 nucleotides HMPREF1078_RS15720 and HMPREF1078_RS15725 are separated by 25 nucleotides
HMPREF1078_RS15710: HMPREF1078_RS15710 - TolC family protein, at 257,695 to 259,077
_RS15710
HMPREF1078_RS15715: HMPREF1078_RS15715 - TetR/AcrR family transcriptional regulator, at 259,117 to 259,536
_RS15715
HMPREF1078_RS20075: HMPREF1078_RS20075 - helix-turn-helix domain containing protein, at 259,582 to 259,707
_RS20075
HMPREF1078_RS15720: HMPREF1078_RS15720 - helix-turn-helix transcriptional regulator, at 259,949 to 260,857
_RS15720
HMPREF1078_RS15725: HMPREF1078_RS15725 - DUF308 domain-containing protein, at 260,883 to 261,401
_RS15725
Position (kb) 259
260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 259.063 kb on + strand at 259.079 kb on + strand at 259.139 kb on + strand at 259.152 kb on - strand at 259.152 kb on - strand at 259.182 kb on + strand, within HMPREF1078_RS15715 at 259.202 kb on + strand, within HMPREF1078_RS15715 at 259.203 kb on + strand, within HMPREF1078_RS15715 at 259.204 kb on - strand, within HMPREF1078_RS15715 at 259.204 kb on - strand, within HMPREF1078_RS15715 at 259.205 kb on + strand, within HMPREF1078_RS15715 at 259.206 kb on - strand, within HMPREF1078_RS15715 at 259.206 kb on - strand, within HMPREF1078_RS15715 at 259.216 kb on - strand, within HMPREF1078_RS15715 at 259.297 kb on + strand, within HMPREF1078_RS15715 at 259.361 kb on - strand, within HMPREF1078_RS15715 at 259.435 kb on + strand, within HMPREF1078_RS15715 at 259.436 kb on + strand, within HMPREF1078_RS15715 at 259.437 kb on - strand, within HMPREF1078_RS15715 at 259.437 kb on - strand, within HMPREF1078_RS15715 at 259.470 kb on + strand, within HMPREF1078_RS15715 at 259.501 kb on + strand at 259.501 kb on + strand at 259.502 kb on - strand at 259.551 kb on + strand at 259.554 kb on + strand at 259.554 kb on + strand at 259.556 kb on + strand at 259.557 kb on - strand at 259.567 kb on + strand at 259.568 kb on - strand at 259.568 kb on - strand at 259.569 kb on + strand at 259.610 kb on + strand, within HMPREF1078_RS20075 at 259.611 kb on - strand, within HMPREF1078_RS20075 at 259.629 kb on + strand, within HMPREF1078_RS20075 at 259.630 kb on - strand, within HMPREF1078_RS20075 at 259.639 kb on - strand, within HMPREF1078_RS20075 at 259.647 kb on + strand, within HMPREF1078_RS20075 at 259.647 kb on + strand, within HMPREF1078_RS20075 at 259.657 kb on - strand, within HMPREF1078_RS20075 at 259.657 kb on - strand, within HMPREF1078_RS20075 at 259.709 kb on - strand at 259.730 kb on + strand at 259.736 kb on - strand at 259.743 kb on - strand at 259.750 kb on - strand at 259.779 kb on - strand at 259.848 kb on - strand at 259.848 kb on - strand at 259.864 kb on + strand at 259.933 kb on + strand at 259.934 kb on - strand at 259.936 kb on + strand at 259.936 kb on + strand at 259.936 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.945 kb on - strand at 259.965 kb on + strand at 259.966 kb on - strand at 259.969 kb on - strand at 259.988 kb on - strand at 259.988 kb on - strand at 259.993 kb on + strand at 259.997 kb on - strand at 260.050 kb on + strand, within HMPREF1078_RS15720 at 260.100 kb on + strand, within HMPREF1078_RS15720 at 260.156 kb on + strand, within HMPREF1078_RS15720 at 260.165 kb on + strand, within HMPREF1078_RS15720 at 260.224 kb on + strand, within HMPREF1078_RS15720 at 260.225 kb on - strand, within HMPREF1078_RS15720 at 260.287 kb on + strand, within HMPREF1078_RS15720 at 260.288 kb on - strand, within HMPREF1078_RS15720 at 260.317 kb on + strand, within HMPREF1078_RS15720 at 260.320 kb on - strand, within HMPREF1078_RS15720 at 260.328 kb on - strand, within HMPREF1078_RS15720 at 260.329 kb on + strand, within HMPREF1078_RS15720 at 260.354 kb on - strand, within HMPREF1078_RS15720 at 260.405 kb on - strand, within HMPREF1078_RS15720 at 260.406 kb on + strand, within HMPREF1078_RS15720 at 260.406 kb on + strand, within HMPREF1078_RS15720 at 260.452 kb on - strand, within HMPREF1078_RS15720 at 260.494 kb on + strand, within HMPREF1078_RS15720 at 260.494 kb on + strand, within HMPREF1078_RS15720 at 260.497 kb on - strand, within HMPREF1078_RS15720 at 260.503 kb on - strand, within HMPREF1078_RS15720 at 260.608 kb on + strand, within HMPREF1078_RS15720 at 260.608 kb on + strand, within HMPREF1078_RS15720 at 260.608 kb on + strand, within HMPREF1078_RS15720 at 260.609 kb on - strand, within HMPREF1078_RS15720 at 260.615 kb on + strand, within HMPREF1078_RS15720 at 260.615 kb on + strand, within HMPREF1078_RS15720 at 260.616 kb on - strand, within HMPREF1078_RS15720 at 260.616 kb on - strand, within HMPREF1078_RS15720 at 260.616 kb on - strand, within HMPREF1078_RS15720 at 260.633 kb on - strand, within HMPREF1078_RS15720 at 260.645 kb on + strand, within HMPREF1078_RS15720 at 260.645 kb on + strand, within HMPREF1078_RS15720 at 260.689 kb on + strand, within HMPREF1078_RS15720 at 260.690 kb on - strand, within HMPREF1078_RS15720 at 260.770 kb on + strand at 260.770 kb on + strand at 260.770 kb on + strand at 260.771 kb on - strand at 260.772 kb on + strand at 260.772 kb on + strand at 260.773 kb on - strand at 260.821 kb on + strand at 260.821 kb on + strand at 260.844 kb on - strand at 260.844 kb on - strand at 260.848 kb on + strand at 260.848 kb on + strand at 260.868 kb on - strand at 260.885 kb on - strand at 260.900 kb on + strand at 260.925 kb on - strand at 260.930 kb on - strand at 261.028 kb on - strand, within HMPREF1078_RS15725 at 261.028 kb on - strand, within HMPREF1078_RS15725 at 261.028 kb on - strand, within HMPREF1078_RS15725 at 261.028 kb on - strand, within HMPREF1078_RS15725 at 261.028 kb on - strand, within HMPREF1078_RS15725 at 261.028 kb on - strand, within HMPREF1078_RS15725 at 261.032 kb on + strand, within HMPREF1078_RS15725 at 261.034 kb on + strand, within HMPREF1078_RS15725 at 261.034 kb on + strand, within HMPREF1078_RS15725 at 261.043 kb on + strand, within HMPREF1078_RS15725 at 261.112 kb on - strand, within HMPREF1078_RS15725 at 261.127 kb on + strand, within HMPREF1078_RS15725 at 261.127 kb on + strand, within HMPREF1078_RS15725 at 261.128 kb on - strand, within HMPREF1078_RS15725 at 261.132 kb on + strand, within HMPREF1078_RS15725 at 261.133 kb on - strand, within HMPREF1078_RS15725 at 261.133 kb on - strand, within HMPREF1078_RS15725 at 261.135 kb on + strand, within HMPREF1078_RS15725 at 261.186 kb on - strand, within HMPREF1078_RS15725 at 261.186 kb on - strand, within HMPREF1078_RS15725 at 261.256 kb on - strand, within HMPREF1078_RS15725 at 261.256 kb on - strand, within HMPREF1078_RS15725 at 261.291 kb on - strand, within HMPREF1078_RS15725 at 261.310 kb on + strand, within HMPREF1078_RS15725 at 261.310 kb on + strand, within HMPREF1078_RS15725 at 261.310 kb on + strand, within HMPREF1078_RS15725 at 261.311 kb on - strand, within HMPREF1078_RS15725 at 261.311 kb on - strand, within HMPREF1078_RS15725 at 261.311 kb on - strand, within HMPREF1078_RS15725 at 261.311 kb on - strand, within HMPREF1078_RS15725 at 261.404 kb on + strand at 261.404 kb on + strand at 261.410 kb on + strand at 261.410 kb on + strand at 261.428 kb on - strand at 261.430 kb on + strand at 261.444 kb on + strand at 261.444 kb on + strand at 261.450 kb on - strand at 261.482 kb on + strand at 261.482 kb on + strand at 261.483 kb on - strand at 261.483 kb on - strand at 261.565 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 259,063 + -1.6 259,079 + +2.4 259,139 + -1.0 259,152 - +0.8 259,152 - +0.4 259,182 + HMPREF1078_RS15715 0.15 +1.2 259,202 + HMPREF1078_RS15715 0.20 +0.6 259,203 + HMPREF1078_RS15715 0.20 -2.0 259,204 - HMPREF1078_RS15715 0.21 +2.0 259,204 - HMPREF1078_RS15715 0.21 -0.4 259,205 + HMPREF1078_RS15715 0.21 +0.4 259,206 - HMPREF1078_RS15715 0.21 +1.7 259,206 - HMPREF1078_RS15715 0.21 -0.3 259,216 - HMPREF1078_RS15715 0.24 +0.7 259,297 + HMPREF1078_RS15715 0.43 -1.0 259,361 - HMPREF1078_RS15715 0.58 +2.0 259,435 + HMPREF1078_RS15715 0.76 +1.4 259,436 + HMPREF1078_RS15715 0.76 +1.2 259,437 - HMPREF1078_RS15715 0.76 +1.5 259,437 - HMPREF1078_RS15715 0.76 +0.4 259,470 + HMPREF1078_RS15715 0.84 -0.3 259,501 + +1.4 259,501 + +0.8 259,502 - +0.8 259,551 + -2.1 259,554 + -0.4 259,554 + +0.5 259,556 + +0.2 259,557 - +0.9 259,567 + +1.9 259,568 - -0.0 259,568 - +0.9 259,569 + -1.6 259,610 + HMPREF1078_RS20075 0.22 +1.4 259,611 - HMPREF1078_RS20075 0.23 -0.3 259,629 + HMPREF1078_RS20075 0.37 -0.3 259,630 - HMPREF1078_RS20075 0.38 -0.4 259,639 - HMPREF1078_RS20075 0.45 +0.7 259,647 + HMPREF1078_RS20075 0.52 +0.7 259,647 + HMPREF1078_RS20075 0.52 +0.4 259,657 - HMPREF1078_RS20075 0.60 -2.8 259,657 - HMPREF1078_RS20075 0.60 -0.2 259,709 - +1.4 259,730 + +0.4 259,736 - -0.8 259,743 - -0.8 259,750 - -0.7 259,779 - -0.3 259,848 - -1.6 259,848 - -1.2 259,864 + -0.8 259,933 + +0.8 259,934 - -1.5 259,936 + +0.6 259,936 + -2.9 259,936 + +0.1 259,944 + +0.4 259,944 + -2.5 259,944 + -0.4 259,944 + -0.4 259,944 + -0.3 259,944 + +1.8 259,944 + +0.4 259,944 + -1.3 259,944 + -2.1 259,944 + -1.6 259,945 - -1.1 259,965 + -0.6 259,966 - -1.8 259,969 - -2.2 259,988 - -1.2 259,988 - -1.1 259,993 + +0.1 259,997 - -1.4 260,050 + HMPREF1078_RS15720 0.11 -1.4 260,100 + HMPREF1078_RS15720 0.17 -1.9 260,156 + HMPREF1078_RS15720 0.23 -2.1 260,165 + HMPREF1078_RS15720 0.24 +1.4 260,224 + HMPREF1078_RS15720 0.30 -1.7 260,225 - HMPREF1078_RS15720 0.30 -0.9 260,287 + HMPREF1078_RS15720 0.37 -0.4 260,288 - HMPREF1078_RS15720 0.37 -1.3 260,317 + HMPREF1078_RS15720 0.40 -1.8 260,320 - HMPREF1078_RS15720 0.41 -0.8 260,328 - HMPREF1078_RS15720 0.42 -1.4 260,329 + HMPREF1078_RS15720 0.42 -2.7 260,354 - HMPREF1078_RS15720 0.45 -2.1 260,405 - HMPREF1078_RS15720 0.50 -2.0 260,406 + HMPREF1078_RS15720 0.50 -1.5 260,406 + HMPREF1078_RS15720 0.50 -1.6 260,452 - HMPREF1078_RS15720 0.55 -1.8 260,494 + HMPREF1078_RS15720 0.60 -1.1 260,494 + HMPREF1078_RS15720 0.60 -2.5 260,497 - HMPREF1078_RS15720 0.60 +0.8 260,503 - HMPREF1078_RS15720 0.61 +0.8 260,608 + HMPREF1078_RS15720 0.72 +0.8 260,608 + HMPREF1078_RS15720 0.72 -2.8 260,608 + HMPREF1078_RS15720 0.72 -0.4 260,609 - HMPREF1078_RS15720 0.73 -0.2 260,615 + HMPREF1078_RS15720 0.73 -1.3 260,615 + HMPREF1078_RS15720 0.73 -2.6 260,616 - HMPREF1078_RS15720 0.73 -1.6 260,616 - HMPREF1078_RS15720 0.73 -1.8 260,616 - HMPREF1078_RS15720 0.73 -1.4 260,633 - HMPREF1078_RS15720 0.75 -0.8 260,645 + HMPREF1078_RS15720 0.77 -0.9 260,645 + HMPREF1078_RS15720 0.77 +0.8 260,689 + HMPREF1078_RS15720 0.81 -1.4 260,690 - HMPREF1078_RS15720 0.82 -0.2 260,770 + -3.0 260,770 + -1.6 260,770 + -2.3 260,771 - -0.7 260,772 + +0.4 260,772 + -2.8 260,773 - -2.4 260,821 + -1.6 260,821 + -2.3 260,844 - +0.4 260,844 - -1.4 260,848 + +1.4 260,848 + -0.0 260,868 - -0.6 260,885 - -0.9 260,900 + -1.8 260,925 - -0.1 260,930 - +1.4 261,028 - HMPREF1078_RS15725 0.28 -0.2 261,028 - HMPREF1078_RS15725 0.28 +0.8 261,028 - HMPREF1078_RS15725 0.28 -2.6 261,028 - HMPREF1078_RS15725 0.28 -1.1 261,028 - HMPREF1078_RS15725 0.28 +0.5 261,028 - HMPREF1078_RS15725 0.28 +0.2 261,032 + HMPREF1078_RS15725 0.29 +1.4 261,034 + HMPREF1078_RS15725 0.29 -1.8 261,034 + HMPREF1078_RS15725 0.29 +0.8 261,043 + HMPREF1078_RS15725 0.31 -0.2 261,112 - HMPREF1078_RS15725 0.44 +0.0 261,127 + HMPREF1078_RS15725 0.47 -0.4 261,127 + HMPREF1078_RS15725 0.47 -0.4 261,128 - HMPREF1078_RS15725 0.47 -1.6 261,132 + HMPREF1078_RS15725 0.48 -0.4 261,133 - HMPREF1078_RS15725 0.48 +0.0 261,133 - HMPREF1078_RS15725 0.48 +0.2 261,135 + HMPREF1078_RS15725 0.49 +0.5 261,186 - HMPREF1078_RS15725 0.58 -0.4 261,186 - HMPREF1078_RS15725 0.58 +2.4 261,256 - HMPREF1078_RS15725 0.72 -0.5 261,256 - HMPREF1078_RS15725 0.72 +1.4 261,291 - HMPREF1078_RS15725 0.79 -1.5 261,310 + HMPREF1078_RS15725 0.82 -1.2 261,310 + HMPREF1078_RS15725 0.82 +0.1 261,310 + HMPREF1078_RS15725 0.82 +2.0 261,311 - HMPREF1078_RS15725 0.82 -1.8 261,311 - HMPREF1078_RS15725 0.82 +4.0 261,311 - HMPREF1078_RS15725 0.82 -0.0 261,311 - HMPREF1078_RS15725 0.82 +0.8 261,404 + -1.9 261,404 + -0.7 261,410 + -1.8 261,410 + -1.3 261,428 - -0.2 261,430 + +0.8 261,444 + -0.6 261,444 + +0.2 261,450 - -1.6 261,482 + -2.5 261,482 + +1.4 261,483 - +1.8 261,483 - -0.9 261,565 - +0.1
Or see this region's nucleotide sequence