Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14235 and HMPREF1078_RS14240 are separated by 52 nucleotides HMPREF1078_RS14240 and HMPREF1078_RS14245 are separated by 152 nucleotides HMPREF1078_RS14245 and HMPREF1078_RS14250 are separated by 118 nucleotides
HMPREF1078_RS14235: HMPREF1078_RS14235 - AAA domain-containing protein, at 317,107 to 320,595
_RS14235
HMPREF1078_RS14240: HMPREF1078_RS14240 - thioredoxin domain-containing protein, at 320,648 to 321,001
_RS14240
HMPREF1078_RS14245: HMPREF1078_RS14245 - RNA polymerase sigma-70 factor, at 321,154 to 321,738
_RS14245
HMPREF1078_RS14250: HMPREF1078_RS14250 - FecR family protein, at 321,857 to 322,882
_RS14250
Position (kb) 320
321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 319.651 kb on - strand, within HMPREF1078_RS14235 at 319.651 kb on - strand, within HMPREF1078_RS14235 at 319.652 kb on + strand, within HMPREF1078_RS14235 at 319.671 kb on + strand, within HMPREF1078_RS14235 at 319.788 kb on - strand, within HMPREF1078_RS14235 at 319.859 kb on + strand, within HMPREF1078_RS14235 at 319.869 kb on + strand, within HMPREF1078_RS14235 at 319.869 kb on + strand, within HMPREF1078_RS14235 at 319.897 kb on - strand, within HMPREF1078_RS14235 at 319.902 kb on + strand, within HMPREF1078_RS14235 at 319.903 kb on - strand, within HMPREF1078_RS14235 at 319.903 kb on - strand, within HMPREF1078_RS14235 at 320.136 kb on + strand, within HMPREF1078_RS14235 at 320.137 kb on - strand, within HMPREF1078_RS14235 at 320.150 kb on - strand, within HMPREF1078_RS14235 at 320.150 kb on - strand, within HMPREF1078_RS14235 at 320.203 kb on - strand, within HMPREF1078_RS14235 at 320.214 kb on - strand, within HMPREF1078_RS14235 at 320.214 kb on - strand, within HMPREF1078_RS14235 at 320.214 kb on - strand, within HMPREF1078_RS14235 at 320.226 kb on - strand, within HMPREF1078_RS14235 at 320.234 kb on + strand, within HMPREF1078_RS14235 at 320.234 kb on + strand, within HMPREF1078_RS14235 at 320.262 kb on + strand at 320.276 kb on + strand at 320.347 kb on - strand at 320.444 kb on - strand at 320.444 kb on - strand at 320.456 kb on - strand at 320.625 kb on + strand at 320.634 kb on - strand at 320.650 kb on - strand at 320.650 kb on - strand at 320.651 kb on + strand at 320.652 kb on - strand at 320.652 kb on - strand at 320.793 kb on - strand, within HMPREF1078_RS14240 at 320.805 kb on + strand, within HMPREF1078_RS14240 at 320.806 kb on - strand, within HMPREF1078_RS14240 at 320.811 kb on + strand, within HMPREF1078_RS14240 at 320.902 kb on + strand, within HMPREF1078_RS14240 at 320.902 kb on + strand, within HMPREF1078_RS14240 at 320.903 kb on - strand, within HMPREF1078_RS14240 at 320.922 kb on + strand, within HMPREF1078_RS14240 at 320.967 kb on - strand at 320.968 kb on + strand at 321.015 kb on - strand at 321.018 kb on - strand at 321.034 kb on + strand at 321.041 kb on - strand at 321.043 kb on + strand at 321.043 kb on + strand at 321.066 kb on + strand at 321.067 kb on - strand at 321.076 kb on - strand at 321.077 kb on + strand at 321.077 kb on + strand at 321.077 kb on + strand at 321.078 kb on - strand at 321.078 kb on - strand at 321.082 kb on - strand at 321.082 kb on - strand at 321.167 kb on + strand at 321.167 kb on + strand at 321.168 kb on - strand at 321.168 kb on - strand at 321.168 kb on - strand at 321.170 kb on - strand at 321.170 kb on - strand at 321.170 kb on - strand at 321.233 kb on - strand, within HMPREF1078_RS14245 at 321.273 kb on + strand, within HMPREF1078_RS14245 at 321.274 kb on - strand, within HMPREF1078_RS14245 at 321.349 kb on + strand, within HMPREF1078_RS14245 at 321.365 kb on + strand, within HMPREF1078_RS14245 at 321.366 kb on - strand, within HMPREF1078_RS14245 at 321.369 kb on + strand, within HMPREF1078_RS14245 at 321.369 kb on + strand, within HMPREF1078_RS14245 at 321.369 kb on + strand, within HMPREF1078_RS14245 at 321.370 kb on - strand, within HMPREF1078_RS14245 at 321.370 kb on - strand, within HMPREF1078_RS14245 at 321.370 kb on - strand, within HMPREF1078_RS14245 at 321.370 kb on - strand, within HMPREF1078_RS14245 at 321.410 kb on + strand, within HMPREF1078_RS14245 at 321.444 kb on - strand, within HMPREF1078_RS14245 at 321.444 kb on - strand, within HMPREF1078_RS14245 at 321.454 kb on + strand, within HMPREF1078_RS14245 at 321.455 kb on - strand, within HMPREF1078_RS14245 at 321.466 kb on + strand, within HMPREF1078_RS14245 at 321.467 kb on - strand, within HMPREF1078_RS14245 at 321.467 kb on - strand, within HMPREF1078_RS14245 at 321.468 kb on + strand, within HMPREF1078_RS14245 at 321.469 kb on - strand, within HMPREF1078_RS14245 at 321.526 kb on + strand, within HMPREF1078_RS14245 at 321.526 kb on + strand, within HMPREF1078_RS14245 at 321.526 kb on + strand, within HMPREF1078_RS14245 at 321.529 kb on - strand, within HMPREF1078_RS14245 at 321.560 kb on + strand, within HMPREF1078_RS14245 at 321.564 kb on + strand, within HMPREF1078_RS14245 at 321.569 kb on + strand, within HMPREF1078_RS14245 at 321.580 kb on + strand, within HMPREF1078_RS14245 at 321.618 kb on + strand, within HMPREF1078_RS14245 at 321.682 kb on - strand at 321.695 kb on + strand at 321.695 kb on + strand at 321.705 kb on - strand at 321.708 kb on - strand at 321.840 kb on + strand at 321.843 kb on + strand at 321.936 kb on + strand at 321.967 kb on + strand, within HMPREF1078_RS14250 at 321.982 kb on + strand, within HMPREF1078_RS14250
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 319,651 - HMPREF1078_RS14235 0.73 +1.4 319,651 - HMPREF1078_RS14235 0.73 -0.4 319,652 + HMPREF1078_RS14235 0.73 -0.3 319,671 + HMPREF1078_RS14235 0.73 -0.7 319,788 - HMPREF1078_RS14235 0.77 +2.4 319,859 + HMPREF1078_RS14235 0.79 +0.4 319,869 + HMPREF1078_RS14235 0.79 -1.6 319,869 + HMPREF1078_RS14235 0.79 +0.4 319,897 - HMPREF1078_RS14235 0.80 +1.4 319,902 + HMPREF1078_RS14235 0.80 -0.4 319,903 - HMPREF1078_RS14235 0.80 -1.1 319,903 - HMPREF1078_RS14235 0.80 +0.6 320,136 + HMPREF1078_RS14235 0.87 -0.6 320,137 - HMPREF1078_RS14235 0.87 +1.1 320,150 - HMPREF1078_RS14235 0.87 -0.2 320,150 - HMPREF1078_RS14235 0.87 -1.6 320,203 - HMPREF1078_RS14235 0.89 -0.6 320,214 - HMPREF1078_RS14235 0.89 -0.2 320,214 - HMPREF1078_RS14235 0.89 -0.0 320,214 - HMPREF1078_RS14235 0.89 -0.0 320,226 - HMPREF1078_RS14235 0.89 -1.2 320,234 + HMPREF1078_RS14235 0.90 -1.4 320,234 + HMPREF1078_RS14235 0.90 -1.2 320,262 + -1.2 320,276 + +0.4 320,347 - -1.7 320,444 - -0.9 320,444 - -0.1 320,456 - -0.3 320,625 + +0.1 320,634 - -0.2 320,650 - +1.8 320,650 - -0.3 320,651 + +0.2 320,652 - +2.0 320,652 - +0.5 320,793 - HMPREF1078_RS14240 0.41 -1.5 320,805 + HMPREF1078_RS14240 0.44 -1.0 320,806 - HMPREF1078_RS14240 0.45 -3.0 320,811 + HMPREF1078_RS14240 0.46 -1.7 320,902 + HMPREF1078_RS14240 0.72 -1.7 320,902 + HMPREF1078_RS14240 0.72 -1.2 320,903 - HMPREF1078_RS14240 0.72 -0.6 320,922 + HMPREF1078_RS14240 0.77 -0.9 320,967 - -1.8 320,968 + -1.1 321,015 - +2.4 321,018 - +0.8 321,034 + -0.2 321,041 - +0.3 321,043 + -0.6 321,043 + +1.6 321,066 + -2.5 321,067 - +0.3 321,076 - +0.7 321,077 + +1.0 321,077 + -1.7 321,077 + +0.2 321,078 - +0.4 321,078 - -0.6 321,082 - +1.1 321,082 - +1.4 321,167 + -1.6 321,167 + -0.6 321,168 - +0.1 321,168 - +1.4 321,168 - +0.8 321,170 - -1.6 321,170 - -1.9 321,170 - -2.0 321,233 - HMPREF1078_RS14245 0.14 -0.2 321,273 + HMPREF1078_RS14245 0.20 +2.1 321,274 - HMPREF1078_RS14245 0.21 +1.4 321,349 + HMPREF1078_RS14245 0.33 -0.0 321,365 + HMPREF1078_RS14245 0.36 +0.1 321,366 - HMPREF1078_RS14245 0.36 +4.0 321,369 + HMPREF1078_RS14245 0.37 -0.4 321,369 + HMPREF1078_RS14245 0.37 +0.4 321,369 + HMPREF1078_RS14245 0.37 +0.8 321,370 - HMPREF1078_RS14245 0.37 -0.4 321,370 - HMPREF1078_RS14245 0.37 -0.4 321,370 - HMPREF1078_RS14245 0.37 +2.4 321,370 - HMPREF1078_RS14245 0.37 +1.4 321,410 + HMPREF1078_RS14245 0.44 +0.2 321,444 - HMPREF1078_RS14245 0.50 -0.9 321,444 - HMPREF1078_RS14245 0.50 +1.4 321,454 + HMPREF1078_RS14245 0.51 -2.2 321,455 - HMPREF1078_RS14245 0.51 +1.4 321,466 + HMPREF1078_RS14245 0.53 +0.1 321,467 - HMPREF1078_RS14245 0.54 -0.4 321,467 - HMPREF1078_RS14245 0.54 +1.4 321,468 + HMPREF1078_RS14245 0.54 -1.4 321,469 - HMPREF1078_RS14245 0.54 +2.0 321,526 + HMPREF1078_RS14245 0.64 +0.4 321,526 + HMPREF1078_RS14245 0.64 -1.4 321,526 + HMPREF1078_RS14245 0.64 +0.3 321,529 - HMPREF1078_RS14245 0.64 -0.2 321,560 + HMPREF1078_RS14245 0.69 -1.7 321,564 + HMPREF1078_RS14245 0.70 +2.4 321,569 + HMPREF1078_RS14245 0.71 -0.7 321,580 + HMPREF1078_RS14245 0.73 +0.4 321,618 + HMPREF1078_RS14245 0.79 -0.7 321,682 - -2.2 321,695 + +0.7 321,695 + +0.1 321,705 - -0.5 321,708 - -1.4 321,840 + -1.7 321,843 + +0.8 321,936 + +0.1 321,967 + HMPREF1078_RS14250 0.11 -0.5 321,982 + HMPREF1078_RS14250 0.12 +0.4
Or see this region's nucleotide sequence