Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13990 and HMPREF1078_RS13995 are separated by 6 nucleotides HMPREF1078_RS13995 and HMPREF1078_RS14000 are separated by 158 nucleotides
HMPREF1078_RS13990: HMPREF1078_RS13990 - endonuclease/exonuclease/phosphatase family protein, at 257,307 to 258,380
_RS13990
HMPREF1078_RS13995: HMPREF1078_RS13995 - hypothetical protein, at 258,387 to 259,850
_RS13995
HMPREF1078_RS14000: HMPREF1078_RS14000 - aminoacyl-histidine dipeptidase, at 260,009 to 261,466
_RS14000
Position (kb) 258
259
260 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 257.521 kb on - strand, within HMPREF1078_RS13990 at 257.590 kb on + strand, within HMPREF1078_RS13990 at 257.685 kb on + strand, within HMPREF1078_RS13990 at 257.714 kb on + strand, within HMPREF1078_RS13990 at 257.715 kb on - strand, within HMPREF1078_RS13990 at 257.784 kb on - strand, within HMPREF1078_RS13990 at 257.912 kb on + strand, within HMPREF1078_RS13990 at 257.921 kb on + strand, within HMPREF1078_RS13990 at 257.921 kb on + strand, within HMPREF1078_RS13990 at 257.921 kb on + strand, within HMPREF1078_RS13990 at 257.922 kb on - strand, within HMPREF1078_RS13990 at 257.927 kb on + strand, within HMPREF1078_RS13990 at 257.928 kb on - strand, within HMPREF1078_RS13990 at 258.012 kb on - strand, within HMPREF1078_RS13990 at 258.012 kb on - strand, within HMPREF1078_RS13990 at 258.183 kb on + strand, within HMPREF1078_RS13990 at 258.184 kb on + strand, within HMPREF1078_RS13990 at 258.184 kb on - strand, within HMPREF1078_RS13990 at 258.188 kb on + strand, within HMPREF1078_RS13990 at 258.209 kb on + strand, within HMPREF1078_RS13990 at 258.293 kb on - strand at 258.293 kb on - strand at 258.293 kb on - strand at 258.363 kb on - strand at 258.366 kb on + strand at 258.460 kb on - strand at 258.519 kb on + strand at 258.520 kb on - strand at 258.557 kb on - strand, within HMPREF1078_RS13995 at 258.587 kb on - strand, within HMPREF1078_RS13995 at 258.599 kb on + strand, within HMPREF1078_RS13995 at 258.599 kb on + strand, within HMPREF1078_RS13995 at 258.599 kb on + strand, within HMPREF1078_RS13995 at 258.600 kb on - strand, within HMPREF1078_RS13995 at 258.612 kb on + strand, within HMPREF1078_RS13995 at 258.612 kb on + strand, within HMPREF1078_RS13995 at 258.613 kb on - strand, within HMPREF1078_RS13995 at 258.613 kb on - strand, within HMPREF1078_RS13995 at 258.719 kb on + strand, within HMPREF1078_RS13995 at 258.720 kb on - strand, within HMPREF1078_RS13995 at 258.720 kb on - strand, within HMPREF1078_RS13995 at 258.720 kb on - strand, within HMPREF1078_RS13995 at 258.721 kb on + strand, within HMPREF1078_RS13995 at 258.721 kb on + strand, within HMPREF1078_RS13995 at 258.721 kb on + strand, within HMPREF1078_RS13995 at 258.722 kb on - strand, within HMPREF1078_RS13995 at 258.722 kb on - strand, within HMPREF1078_RS13995 at 258.722 kb on - strand, within HMPREF1078_RS13995 at 258.866 kb on + strand, within HMPREF1078_RS13995 at 258.867 kb on - strand, within HMPREF1078_RS13995 at 258.867 kb on - strand, within HMPREF1078_RS13995 at 258.883 kb on + strand, within HMPREF1078_RS13995 at 258.883 kb on + strand, within HMPREF1078_RS13995 at 258.884 kb on - strand, within HMPREF1078_RS13995 at 258.972 kb on + strand, within HMPREF1078_RS13995 at 258.972 kb on + strand, within HMPREF1078_RS13995 at 258.972 kb on + strand, within HMPREF1078_RS13995 at 258.972 kb on + strand, within HMPREF1078_RS13995 at 258.972 kb on + strand, within HMPREF1078_RS13995 at 258.973 kb on - strand, within HMPREF1078_RS13995 at 258.973 kb on - strand, within HMPREF1078_RS13995 at 258.987 kb on - strand, within HMPREF1078_RS13995 at 259.009 kb on - strand, within HMPREF1078_RS13995 at 259.089 kb on - strand, within HMPREF1078_RS13995 at 259.089 kb on - strand, within HMPREF1078_RS13995 at 259.095 kb on - strand, within HMPREF1078_RS13995 at 259.095 kb on - strand, within HMPREF1078_RS13995 at 259.095 kb on - strand, within HMPREF1078_RS13995 at 259.100 kb on - strand, within HMPREF1078_RS13995 at 259.151 kb on - strand, within HMPREF1078_RS13995 at 259.240 kb on + strand, within HMPREF1078_RS13995 at 259.241 kb on - strand, within HMPREF1078_RS13995 at 259.269 kb on - strand, within HMPREF1078_RS13995 at 259.270 kb on + strand, within HMPREF1078_RS13995 at 259.271 kb on - strand, within HMPREF1078_RS13995 at 259.271 kb on - strand, within HMPREF1078_RS13995 at 259.271 kb on - strand, within HMPREF1078_RS13995 at 259.271 kb on - strand, within HMPREF1078_RS13995 at 259.330 kb on + strand, within HMPREF1078_RS13995 at 259.330 kb on + strand, within HMPREF1078_RS13995 at 259.330 kb on + strand, within HMPREF1078_RS13995 at 259.330 kb on + strand, within HMPREF1078_RS13995 at 259.331 kb on - strand, within HMPREF1078_RS13995 at 259.331 kb on - strand, within HMPREF1078_RS13995 at 259.332 kb on + strand, within HMPREF1078_RS13995 at 259.332 kb on + strand, within HMPREF1078_RS13995 at 259.332 kb on + strand, within HMPREF1078_RS13995 at 259.332 kb on + strand, within HMPREF1078_RS13995 at 259.332 kb on + strand, within HMPREF1078_RS13995 at 259.332 kb on + strand, within HMPREF1078_RS13995 at 259.333 kb on - strand, within HMPREF1078_RS13995 at 259.333 kb on - strand, within HMPREF1078_RS13995 at 259.333 kb on - strand, within HMPREF1078_RS13995 at 259.333 kb on - strand, within HMPREF1078_RS13995 at 259.333 kb on - strand, within HMPREF1078_RS13995 at 259.334 kb on + strand, within HMPREF1078_RS13995 at 259.334 kb on + strand, within HMPREF1078_RS13995 at 259.334 kb on + strand, within HMPREF1078_RS13995 at 259.334 kb on + strand, within HMPREF1078_RS13995 at 259.334 kb on + strand, within HMPREF1078_RS13995 at 259.334 kb on + strand, within HMPREF1078_RS13995 at 259.335 kb on - strand, within HMPREF1078_RS13995 at 259.335 kb on - strand, within HMPREF1078_RS13995 at 259.335 kb on - strand, within HMPREF1078_RS13995 at 259.335 kb on - strand, within HMPREF1078_RS13995 at 259.335 kb on - strand, within HMPREF1078_RS13995 at 259.335 kb on - strand, within HMPREF1078_RS13995 at 259.335 kb on - strand, within HMPREF1078_RS13995 at 259.335 kb on - strand, within HMPREF1078_RS13995 at 259.335 kb on - strand, within HMPREF1078_RS13995 at 259.356 kb on - strand, within HMPREF1078_RS13995 at 259.379 kb on + strand, within HMPREF1078_RS13995 at 259.391 kb on + strand, within HMPREF1078_RS13995 at 259.393 kb on + strand, within HMPREF1078_RS13995 at 259.401 kb on + strand, within HMPREF1078_RS13995 at 259.401 kb on + strand, within HMPREF1078_RS13995 at 259.402 kb on - strand, within HMPREF1078_RS13995 at 259.402 kb on - strand, within HMPREF1078_RS13995 at 259.414 kb on + strand, within HMPREF1078_RS13995 at 259.415 kb on - strand, within HMPREF1078_RS13995 at 259.528 kb on + strand, within HMPREF1078_RS13995 at 259.528 kb on + strand, within HMPREF1078_RS13995 at 259.529 kb on - strand, within HMPREF1078_RS13995 at 259.554 kb on + strand, within HMPREF1078_RS13995 at 259.554 kb on + strand, within HMPREF1078_RS13995 at 259.554 kb on + strand, within HMPREF1078_RS13995 at 259.555 kb on - strand, within HMPREF1078_RS13995 at 259.666 kb on + strand, within HMPREF1078_RS13995 at 259.667 kb on - strand, within HMPREF1078_RS13995 at 259.667 kb on - strand, within HMPREF1078_RS13995 at 259.667 kb on - strand, within HMPREF1078_RS13995 at 259.696 kb on + strand, within HMPREF1078_RS13995 at 259.696 kb on - strand, within HMPREF1078_RS13995 at 259.696 kb on - strand, within HMPREF1078_RS13995 at 259.809 kb on + strand at 259.809 kb on + strand at 259.810 kb on - strand at 259.810 kb on - strand at 259.810 kb on - strand at 259.810 kb on - strand at 259.812 kb on - strand at 259.818 kb on + strand at 259.818 kb on + strand at 259.819 kb on + strand at 259.819 kb on - strand at 259.819 kb on - strand at 259.821 kb on + strand at 259.821 kb on + strand at 259.856 kb on + strand at 259.861 kb on - strand at 259.861 kb on - strand at 259.863 kb on + strand at 259.866 kb on + strand at 259.867 kb on - strand at 259.883 kb on + strand at 259.887 kb on + strand at 259.895 kb on - strand at 259.895 kb on - strand at 259.895 kb on - strand at 259.903 kb on + strand at 259.917 kb on + strand at 259.920 kb on + strand at 259.923 kb on - strand at 259.977 kb on + strand at 259.989 kb on - strand at 259.989 kb on - strand at 259.990 kb on + strand at 259.991 kb on - strand at 260.002 kb on + strand at 260.003 kb on - strand at 260.031 kb on - strand at 260.034 kb on - strand at 260.042 kb on + strand at 260.132 kb on - strand at 260.132 kb on - strand at 260.222 kb on - strand, within HMPREF1078_RS14000 at 260.224 kb on - strand, within HMPREF1078_RS14000 at 260.224 kb on - strand, within HMPREF1078_RS14000 at 260.224 kb on - strand, within HMPREF1078_RS14000 at 260.224 kb on - strand, within HMPREF1078_RS14000 at 260.297 kb on + strand, within HMPREF1078_RS14000 at 260.499 kb on - strand, within HMPREF1078_RS14000 at 260.499 kb on - strand, within HMPREF1078_RS14000 at 260.527 kb on - strand, within HMPREF1078_RS14000 at 260.527 kb on - strand, within HMPREF1078_RS14000 at 260.538 kb on + strand, within HMPREF1078_RS14000 at 260.539 kb on - strand, within HMPREF1078_RS14000 at 260.539 kb on - strand, within HMPREF1078_RS14000 at 260.539 kb on - strand, within HMPREF1078_RS14000 at 260.539 kb on - strand, within HMPREF1078_RS14000 at 260.570 kb on + strand, within HMPREF1078_RS14000 at 260.571 kb on - strand, within HMPREF1078_RS14000 at 260.576 kb on + strand, within HMPREF1078_RS14000 at 260.577 kb on - strand, within HMPREF1078_RS14000 at 260.696 kb on + strand, within HMPREF1078_RS14000 at 260.731 kb on + strand, within HMPREF1078_RS14000 at 260.763 kb on + strand, within HMPREF1078_RS14000 at 260.770 kb on - strand, within HMPREF1078_RS14000 at 260.810 kb on + strand, within HMPREF1078_RS14000 at 260.811 kb on - strand, within HMPREF1078_RS14000 at 260.811 kb on - strand, within HMPREF1078_RS14000
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 257,521 - HMPREF1078_RS13990 0.20 +0.4 257,590 + HMPREF1078_RS13990 0.26 +0.4 257,685 + HMPREF1078_RS13990 0.35 -1.3 257,714 + HMPREF1078_RS13990 0.38 +0.9 257,715 - HMPREF1078_RS13990 0.38 -1.3 257,784 - HMPREF1078_RS13990 0.44 +0.3 257,912 + HMPREF1078_RS13990 0.56 -1.5 257,921 + HMPREF1078_RS13990 0.57 +0.8 257,921 + HMPREF1078_RS13990 0.57 -1.2 257,921 + HMPREF1078_RS13990 0.57 -0.2 257,922 - HMPREF1078_RS13990 0.57 -0.8 257,927 + HMPREF1078_RS13990 0.58 -0.4 257,928 - HMPREF1078_RS13990 0.58 +0.0 258,012 - HMPREF1078_RS13990 0.66 -2.1 258,012 - HMPREF1078_RS13990 0.66 -1.4 258,183 + HMPREF1078_RS13990 0.82 +0.8 258,184 + HMPREF1078_RS13990 0.82 +0.0 258,184 - HMPREF1078_RS13990 0.82 -1.1 258,188 + HMPREF1078_RS13990 0.82 +0.1 258,209 + HMPREF1078_RS13990 0.84 +0.8 258,293 - -2.2 258,293 - +2.9 258,293 - -0.2 258,363 - +0.1 258,366 + -0.4 258,460 - -1.1 258,519 + -1.1 258,520 - -0.7 258,557 - HMPREF1078_RS13995 0.12 +0.7 258,587 - HMPREF1078_RS13995 0.14 -1.6 258,599 + HMPREF1078_RS13995 0.14 -0.1 258,599 + HMPREF1078_RS13995 0.14 -1.0 258,599 + HMPREF1078_RS13995 0.14 -0.6 258,600 - HMPREF1078_RS13995 0.15 -1.0 258,612 + HMPREF1078_RS13995 0.15 -1.0 258,612 + HMPREF1078_RS13995 0.15 +0.8 258,613 - HMPREF1078_RS13995 0.15 -1.0 258,613 - HMPREF1078_RS13995 0.15 -1.0 258,719 + HMPREF1078_RS13995 0.23 -0.2 258,720 - HMPREF1078_RS13995 0.23 -2.8 258,720 - HMPREF1078_RS13995 0.23 +0.4 258,720 - HMPREF1078_RS13995 0.23 -1.4 258,721 + HMPREF1078_RS13995 0.23 -1.9 258,721 + HMPREF1078_RS13995 0.23 +0.1 258,721 + HMPREF1078_RS13995 0.23 -0.4 258,722 - HMPREF1078_RS13995 0.23 -2.4 258,722 - HMPREF1078_RS13995 0.23 -1.5 258,722 - HMPREF1078_RS13995 0.23 -3.2 258,866 + HMPREF1078_RS13995 0.33 -1.2 258,867 - HMPREF1078_RS13995 0.33 -2.3 258,867 - HMPREF1078_RS13995 0.33 +1.4 258,883 + HMPREF1078_RS13995 0.34 -2.0 258,883 + HMPREF1078_RS13995 0.34 +0.3 258,884 - HMPREF1078_RS13995 0.34 -1.9 258,972 + HMPREF1078_RS13995 0.40 -0.6 258,972 + HMPREF1078_RS13995 0.40 +1.4 258,972 + HMPREF1078_RS13995 0.40 -1.7 258,972 + HMPREF1078_RS13995 0.40 -1.5 258,972 + HMPREF1078_RS13995 0.40 +1.4 258,973 - HMPREF1078_RS13995 0.40 +0.4 258,973 - HMPREF1078_RS13995 0.40 -0.4 258,987 - HMPREF1078_RS13995 0.41 -2.3 259,009 - HMPREF1078_RS13995 0.42 -1.2 259,089 - HMPREF1078_RS13995 0.48 +0.8 259,089 - HMPREF1078_RS13995 0.48 -3.0 259,095 - HMPREF1078_RS13995 0.48 -0.4 259,095 - HMPREF1078_RS13995 0.48 -1.3 259,095 - HMPREF1078_RS13995 0.48 -1.8 259,100 - HMPREF1078_RS13995 0.49 -1.5 259,151 - HMPREF1078_RS13995 0.52 -2.4 259,240 + HMPREF1078_RS13995 0.58 -0.7 259,241 - HMPREF1078_RS13995 0.58 +0.4 259,269 - HMPREF1078_RS13995 0.60 -3.9 259,270 + HMPREF1078_RS13995 0.60 -1.0 259,271 - HMPREF1078_RS13995 0.60 -0.9 259,271 - HMPREF1078_RS13995 0.60 -2.3 259,271 - HMPREF1078_RS13995 0.60 -1.3 259,271 - HMPREF1078_RS13995 0.60 +0.1 259,330 + HMPREF1078_RS13995 0.64 -2.5 259,330 + HMPREF1078_RS13995 0.64 +1.0 259,330 + HMPREF1078_RS13995 0.64 -2.3 259,330 + HMPREF1078_RS13995 0.64 -0.2 259,331 - HMPREF1078_RS13995 0.64 -1.7 259,331 - HMPREF1078_RS13995 0.64 -1.0 259,332 + HMPREF1078_RS13995 0.65 -0.6 259,332 + HMPREF1078_RS13995 0.65 -3.1 259,332 + HMPREF1078_RS13995 0.65 +0.8 259,332 + HMPREF1078_RS13995 0.65 -0.8 259,332 + HMPREF1078_RS13995 0.65 +1.4 259,332 + HMPREF1078_RS13995 0.65 -2.8 259,333 - HMPREF1078_RS13995 0.65 +0.4 259,333 - HMPREF1078_RS13995 0.65 +0.4 259,333 - HMPREF1078_RS13995 0.65 -2.2 259,333 - HMPREF1078_RS13995 0.65 -2.0 259,333 - HMPREF1078_RS13995 0.65 -1.3 259,334 + HMPREF1078_RS13995 0.65 +0.8 259,334 + HMPREF1078_RS13995 0.65 -0.4 259,334 + HMPREF1078_RS13995 0.65 -1.5 259,334 + HMPREF1078_RS13995 0.65 -1.0 259,334 + HMPREF1078_RS13995 0.65 +0.8 259,334 + HMPREF1078_RS13995 0.65 +1.4 259,335 - HMPREF1078_RS13995 0.65 +2.4 259,335 - HMPREF1078_RS13995 0.65 -3.1 259,335 - HMPREF1078_RS13995 0.65 +0.4 259,335 - HMPREF1078_RS13995 0.65 -1.2 259,335 - HMPREF1078_RS13995 0.65 -2.0 259,335 - HMPREF1078_RS13995 0.65 -0.6 259,335 - HMPREF1078_RS13995 0.65 -1.6 259,335 - HMPREF1078_RS13995 0.65 -1.4 259,335 - HMPREF1078_RS13995 0.65 -1.7 259,356 - HMPREF1078_RS13995 0.66 -2.7 259,379 + HMPREF1078_RS13995 0.68 -1.8 259,391 + HMPREF1078_RS13995 0.69 -0.4 259,393 + HMPREF1078_RS13995 0.69 -0.6 259,401 + HMPREF1078_RS13995 0.69 -0.2 259,401 + HMPREF1078_RS13995 0.69 +1.4 259,402 - HMPREF1078_RS13995 0.69 -2.1 259,402 - HMPREF1078_RS13995 0.69 -2.7 259,414 + HMPREF1078_RS13995 0.70 -0.4 259,415 - HMPREF1078_RS13995 0.70 -0.7 259,528 + HMPREF1078_RS13995 0.78 -0.9 259,528 + HMPREF1078_RS13995 0.78 -1.4 259,529 - HMPREF1078_RS13995 0.78 -1.7 259,554 + HMPREF1078_RS13995 0.80 -0.2 259,554 + HMPREF1078_RS13995 0.80 +0.4 259,554 + HMPREF1078_RS13995 0.80 -1.0 259,555 - HMPREF1078_RS13995 0.80 +0.8 259,666 + HMPREF1078_RS13995 0.87 -1.3 259,667 - HMPREF1078_RS13995 0.87 -0.8 259,667 - HMPREF1078_RS13995 0.87 -0.2 259,667 - HMPREF1078_RS13995 0.87 -2.7 259,696 + HMPREF1078_RS13995 0.89 -1.2 259,696 - HMPREF1078_RS13995 0.89 -2.0 259,696 - HMPREF1078_RS13995 0.89 -3.2 259,809 + -3.0 259,809 + -2.4 259,810 - +0.1 259,810 - -0.5 259,810 - -1.0 259,810 - +2.4 259,812 - -1.6 259,818 + +2.4 259,818 + -1.3 259,819 + -1.3 259,819 - -1.0 259,819 - -1.3 259,821 + +0.4 259,821 + -0.9 259,856 + +1.4 259,861 - -1.3 259,861 - -1.8 259,863 + -1.0 259,866 + -1.3 259,867 - -1.7 259,883 + -1.7 259,887 + -2.9 259,895 - +0.8 259,895 - -2.0 259,895 - +0.9 259,903 + +1.4 259,917 + -0.6 259,920 + -0.4 259,923 - -1.2 259,977 + +0.4 259,989 - -1.2 259,989 - -1.7 259,990 + +0.1 259,991 - -0.7 260,002 + +1.4 260,003 - -0.2 260,031 - -1.0 260,034 - -1.1 260,042 + +1.0 260,132 - -1.6 260,132 - -1.0 260,222 - HMPREF1078_RS14000 0.15 -1.7 260,224 - HMPREF1078_RS14000 0.15 -0.9 260,224 - HMPREF1078_RS14000 0.15 +0.8 260,224 - HMPREF1078_RS14000 0.15 -1.9 260,224 - HMPREF1078_RS14000 0.15 -0.0 260,297 + HMPREF1078_RS14000 0.20 -1.9 260,499 - HMPREF1078_RS14000 0.34 -0.9 260,499 - HMPREF1078_RS14000 0.34 +0.1 260,527 - HMPREF1078_RS14000 0.36 -1.6 260,527 - HMPREF1078_RS14000 0.36 -3.4 260,538 + HMPREF1078_RS14000 0.36 -2.0 260,539 - HMPREF1078_RS14000 0.36 -1.0 260,539 - HMPREF1078_RS14000 0.36 -0.2 260,539 - HMPREF1078_RS14000 0.36 -1.7 260,539 - HMPREF1078_RS14000 0.36 -0.4 260,570 + HMPREF1078_RS14000 0.38 -0.7 260,571 - HMPREF1078_RS14000 0.39 -3.0 260,576 + HMPREF1078_RS14000 0.39 +0.6 260,577 - HMPREF1078_RS14000 0.39 -1.7 260,696 + HMPREF1078_RS14000 0.47 -0.2 260,731 + HMPREF1078_RS14000 0.50 -0.4 260,763 + HMPREF1078_RS14000 0.52 +1.4 260,770 - HMPREF1078_RS14000 0.52 +2.3 260,810 + HMPREF1078_RS14000 0.55 -1.7 260,811 - HMPREF1078_RS14000 0.55 -0.3 260,811 - HMPREF1078_RS14000 0.55 -0.2
Or see this region's nucleotide sequence