Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13645 and HMPREF1078_RS13650 are separated by 68 nucleotides HMPREF1078_RS13650 and HMPREF1078_RS13655 are separated by 378 nucleotides
HMPREF1078_RS13645: HMPREF1078_RS13645 - LacI family DNA-binding transcriptional regulator, at 177,389 to 178,444
_RS13645
HMPREF1078_RS13650: HMPREF1078_RS13650 - hypothetical protein, at 178,513 to 179,151
_RS13650
HMPREF1078_RS13655: HMPREF1078_RS13655 - efflux RND transporter periplasmic adaptor subunit, at 179,530 to 180,741
_RS13655
Position (kb) 178
179
180 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 177.563 kb on + strand, within HMPREF1078_RS13645 at 177.589 kb on + strand, within HMPREF1078_RS13645 at 177.595 kb on - strand, within HMPREF1078_RS13645 at 177.634 kb on - strand, within HMPREF1078_RS13645 at 177.644 kb on + strand, within HMPREF1078_RS13645 at 177.645 kb on - strand, within HMPREF1078_RS13645 at 177.665 kb on + strand, within HMPREF1078_RS13645 at 177.666 kb on - strand, within HMPREF1078_RS13645 at 177.666 kb on - strand, within HMPREF1078_RS13645 at 177.666 kb on - strand, within HMPREF1078_RS13645 at 177.707 kb on - strand, within HMPREF1078_RS13645 at 177.714 kb on - strand, within HMPREF1078_RS13645 at 177.719 kb on + strand, within HMPREF1078_RS13645 at 177.720 kb on - strand, within HMPREF1078_RS13645 at 177.720 kb on - strand, within HMPREF1078_RS13645 at 177.747 kb on - strand, within HMPREF1078_RS13645 at 177.747 kb on - strand, within HMPREF1078_RS13645 at 177.747 kb on - strand, within HMPREF1078_RS13645 at 177.759 kb on + strand, within HMPREF1078_RS13645 at 177.759 kb on + strand, within HMPREF1078_RS13645 at 177.763 kb on + strand, within HMPREF1078_RS13645 at 177.763 kb on + strand, within HMPREF1078_RS13645 at 177.763 kb on + strand, within HMPREF1078_RS13645 at 177.774 kb on + strand, within HMPREF1078_RS13645 at 177.792 kb on + strand, within HMPREF1078_RS13645 at 177.830 kb on + strand, within HMPREF1078_RS13645 at 177.830 kb on + strand, within HMPREF1078_RS13645 at 177.898 kb on - strand, within HMPREF1078_RS13645 at 177.898 kb on - strand, within HMPREF1078_RS13645 at 177.930 kb on + strand, within HMPREF1078_RS13645 at 177.931 kb on - strand, within HMPREF1078_RS13645 at 177.937 kb on + strand, within HMPREF1078_RS13645 at 177.989 kb on + strand, within HMPREF1078_RS13645 at 177.989 kb on + strand, within HMPREF1078_RS13645 at 177.989 kb on + strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 178.005 kb on - strand, within HMPREF1078_RS13645 at 178.005 kb on - strand, within HMPREF1078_RS13645 at 178.125 kb on + strand, within HMPREF1078_RS13645 at 178.141 kb on + strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.161 kb on + strand, within HMPREF1078_RS13645 at 178.187 kb on - strand, within HMPREF1078_RS13645 at 178.229 kb on - strand, within HMPREF1078_RS13645 at 178.258 kb on - strand, within HMPREF1078_RS13645 at 178.374 kb on - strand at 178.429 kb on + strand at 178.429 kb on + strand at 178.431 kb on + strand at 178.431 kb on + strand at 178.431 kb on + strand at 178.432 kb on - strand at 178.432 kb on - strand at 178.439 kb on - strand at 178.444 kb on + strand at 178.444 kb on + strand at 178.445 kb on - strand at 178.457 kb on + strand at 178.457 kb on + strand at 178.458 kb on - strand at 178.458 kb on - strand at 178.458 kb on - strand at 178.460 kb on - strand at 178.460 kb on - strand at 178.478 kb on - strand at 178.498 kb on - strand at 178.498 kb on - strand at 178.511 kb on + strand at 178.511 kb on + strand at 178.511 kb on + strand at 178.512 kb on - strand at 178.512 kb on - strand at 178.514 kb on + strand at 178.514 kb on + strand at 178.515 kb on - strand at 178.515 kb on - strand at 178.515 kb on - strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.517 kb on - strand at 178.517 kb on - strand at 178.553 kb on - strand at 178.581 kb on + strand, within HMPREF1078_RS13650 at 178.581 kb on + strand, within HMPREF1078_RS13650 at 178.581 kb on + strand, within HMPREF1078_RS13650 at 178.582 kb on - strand, within HMPREF1078_RS13650 at 178.582 kb on - strand, within HMPREF1078_RS13650 at 178.582 kb on - strand, within HMPREF1078_RS13650 at 178.583 kb on + strand, within HMPREF1078_RS13650 at 178.583 kb on + strand, within HMPREF1078_RS13650 at 178.584 kb on - strand, within HMPREF1078_RS13650 at 178.584 kb on - strand, within HMPREF1078_RS13650 at 178.587 kb on + strand, within HMPREF1078_RS13650 at 178.588 kb on - strand, within HMPREF1078_RS13650 at 178.726 kb on - strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.752 kb on - strand, within HMPREF1078_RS13650 at 178.752 kb on - strand, within HMPREF1078_RS13650 at 178.752 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.804 kb on + strand, within HMPREF1078_RS13650 at 178.842 kb on + strand, within HMPREF1078_RS13650 at 178.851 kb on + strand, within HMPREF1078_RS13650 at 178.852 kb on - strand, within HMPREF1078_RS13650 at 178.856 kb on + strand, within HMPREF1078_RS13650 at 178.857 kb on - strand, within HMPREF1078_RS13650 at 178.857 kb on - strand, within HMPREF1078_RS13650 at 179.035 kb on - strand, within HMPREF1078_RS13650 at 179.035 kb on - strand, within HMPREF1078_RS13650 at 179.035 kb on - strand, within HMPREF1078_RS13650 at 179.057 kb on + strand, within HMPREF1078_RS13650 at 179.103 kb on - strand at 179.137 kb on - strand at 179.137 kb on - strand at 179.151 kb on + strand at 179.152 kb on - strand at 179.162 kb on + strand at 179.163 kb on - strand at 179.167 kb on - strand at 179.173 kb on + strand at 179.175 kb on + strand at 179.183 kb on - strand at 179.231 kb on + strand at 179.276 kb on + strand at 179.276 kb on + strand at 179.277 kb on - strand at 179.277 kb on - strand at 179.277 kb on - strand at 179.295 kb on + strand at 179.328 kb on - strand at 179.343 kb on - strand at 179.358 kb on + strand at 179.358 kb on + strand at 179.384 kb on + strand at 179.384 kb on + strand at 179.384 kb on + strand at 179.385 kb on - strand at 179.389 kb on + strand at 179.390 kb on - strand at 179.486 kb on - strand at 179.486 kb on - strand at 179.486 kb on - strand at 179.503 kb on + strand at 179.504 kb on - strand at 179.505 kb on + strand at 179.508 kb on + strand at 179.508 kb on + strand at 179.508 kb on + strand at 179.508 kb on + strand at 179.516 kb on - strand at 179.517 kb on + strand at 179.517 kb on + strand at 179.517 kb on + strand at 179.517 kb on + strand at 179.518 kb on - strand at 179.518 kb on - strand at 179.518 kb on - strand at 179.519 kb on + strand at 179.519 kb on + strand at 179.519 kb on + strand at 179.519 kb on + strand at 179.520 kb on - strand at 179.523 kb on - strand at 179.529 kb on + strand at 179.530 kb on - strand at 179.553 kb on + strand at 179.553 kb on + strand at 179.554 kb on - strand at 179.554 kb on - strand at 179.556 kb on + strand at 179.557 kb on - strand at 179.567 kb on + strand at 179.568 kb on - strand at 179.597 kb on + strand at 179.598 kb on - strand at 179.598 kb on - strand at 179.634 kb on + strand at 179.742 kb on - strand, within HMPREF1078_RS13655 at 179.742 kb on - strand, within HMPREF1078_RS13655 at 179.763 kb on + strand, within HMPREF1078_RS13655 at 179.763 kb on + strand, within HMPREF1078_RS13655 at 179.770 kb on - strand, within HMPREF1078_RS13655 at 179.774 kb on + strand, within HMPREF1078_RS13655 at 179.774 kb on + strand, within HMPREF1078_RS13655 at 179.839 kb on + strand, within HMPREF1078_RS13655 at 179.898 kb on + strand, within HMPREF1078_RS13655 at 179.965 kb on + strand, within HMPREF1078_RS13655 at 179.988 kb on + strand, within HMPREF1078_RS13655 at 179.988 kb on + strand, within HMPREF1078_RS13655 at 179.989 kb on - strand, within HMPREF1078_RS13655 at 179.989 kb on - strand, within HMPREF1078_RS13655 at 179.989 kb on - strand, within HMPREF1078_RS13655 at 180.051 kb on - strand, within HMPREF1078_RS13655
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 177,563 + HMPREF1078_RS13645 0.16 -1.9 177,589 + HMPREF1078_RS13645 0.19 -1.6 177,595 - HMPREF1078_RS13645 0.20 -0.6 177,634 - HMPREF1078_RS13645 0.23 -0.9 177,644 + HMPREF1078_RS13645 0.24 -1.8 177,645 - HMPREF1078_RS13645 0.24 -2.7 177,665 + HMPREF1078_RS13645 0.26 -0.9 177,666 - HMPREF1078_RS13645 0.26 -1.3 177,666 - HMPREF1078_RS13645 0.26 -2.9 177,666 - HMPREF1078_RS13645 0.26 +0.1 177,707 - HMPREF1078_RS13645 0.30 -3.1 177,714 - HMPREF1078_RS13645 0.31 -0.9 177,719 + HMPREF1078_RS13645 0.31 -0.3 177,720 - HMPREF1078_RS13645 0.31 -1.4 177,720 - HMPREF1078_RS13645 0.31 +0.5 177,747 - HMPREF1078_RS13645 0.34 +0.6 177,747 - HMPREF1078_RS13645 0.34 -0.3 177,747 - HMPREF1078_RS13645 0.34 -2.7 177,759 + HMPREF1078_RS13645 0.35 -3.2 177,759 + HMPREF1078_RS13645 0.35 -1.7 177,763 + HMPREF1078_RS13645 0.35 -1.7 177,763 + HMPREF1078_RS13645 0.35 +0.7 177,763 + HMPREF1078_RS13645 0.35 -1.4 177,774 + HMPREF1078_RS13645 0.36 +1.1 177,792 + HMPREF1078_RS13645 0.38 +0.1 177,830 + HMPREF1078_RS13645 0.42 -1.7 177,830 + HMPREF1078_RS13645 0.42 -1.6 177,898 - HMPREF1078_RS13645 0.48 -1.5 177,898 - HMPREF1078_RS13645 0.48 +2.4 177,930 + HMPREF1078_RS13645 0.51 -0.9 177,931 - HMPREF1078_RS13645 0.51 +0.1 177,937 + HMPREF1078_RS13645 0.52 -0.2 177,989 + HMPREF1078_RS13645 0.57 -0.2 177,989 + HMPREF1078_RS13645 0.57 -1.1 177,989 + HMPREF1078_RS13645 0.57 -1.5 177,990 - HMPREF1078_RS13645 0.57 +0.3 177,990 - HMPREF1078_RS13645 0.57 -1.6 177,990 - HMPREF1078_RS13645 0.57 +0.1 177,990 - HMPREF1078_RS13645 0.57 -2.6 177,990 - HMPREF1078_RS13645 0.57 -3.8 177,990 - HMPREF1078_RS13645 0.57 -0.8 177,990 - HMPREF1078_RS13645 0.57 -0.1 177,993 + HMPREF1078_RS13645 0.57 -0.9 177,993 + HMPREF1078_RS13645 0.57 -1.1 177,993 + HMPREF1078_RS13645 0.57 +1.0 177,993 + HMPREF1078_RS13645 0.57 -2.1 177,993 + HMPREF1078_RS13645 0.57 +1.4 177,993 + HMPREF1078_RS13645 0.57 -1.4 177,994 - HMPREF1078_RS13645 0.57 +2.4 177,994 - HMPREF1078_RS13645 0.57 +2.4 177,994 - HMPREF1078_RS13645 0.57 -2.6 177,994 - HMPREF1078_RS13645 0.57 -0.5 177,994 - HMPREF1078_RS13645 0.57 -0.2 177,994 - HMPREF1078_RS13645 0.57 -0.4 178,005 - HMPREF1078_RS13645 0.58 -1.8 178,005 - HMPREF1078_RS13645 0.58 -0.2 178,125 + HMPREF1078_RS13645 0.70 -2.4 178,141 + HMPREF1078_RS13645 0.71 -1.5 178,142 - HMPREF1078_RS13645 0.71 -2.9 178,142 - HMPREF1078_RS13645 0.71 -0.5 178,142 - HMPREF1078_RS13645 0.71 -2.4 178,142 - HMPREF1078_RS13645 0.71 -3.1 178,161 + HMPREF1078_RS13645 0.73 +0.3 178,187 - HMPREF1078_RS13645 0.76 -1.9 178,229 - HMPREF1078_RS13645 0.80 -1.5 178,258 - HMPREF1078_RS13645 0.82 -2.3 178,374 - +0.2 178,429 + -0.8 178,429 + -1.0 178,431 + -3.1 178,431 + -2.4 178,431 + -2.4 178,432 - -3.0 178,432 - +0.4 178,439 - -1.8 178,444 + -2.2 178,444 + +0.4 178,445 - -1.5 178,457 + +1.0 178,457 + -0.5 178,458 - -1.5 178,458 - +0.8 178,458 - +0.3 178,460 - -1.6 178,460 - -1.1 178,478 - -1.6 178,498 - +0.2 178,498 - -0.6 178,511 + -1.9 178,511 + -1.1 178,511 + -3.0 178,512 - -1.2 178,512 - -0.9 178,514 + -1.1 178,514 + -1.7 178,515 - +0.8 178,515 - -0.3 178,515 - -0.8 178,516 + -0.6 178,516 + -1.9 178,516 + -1.8 178,516 + -0.8 178,516 + -1.6 178,516 + -1.7 178,517 - +2.4 178,517 - +0.1 178,553 - +0.4 178,581 + HMPREF1078_RS13650 0.11 -2.4 178,581 + HMPREF1078_RS13650 0.11 -1.6 178,581 + HMPREF1078_RS13650 0.11 -1.7 178,582 - HMPREF1078_RS13650 0.11 -1.1 178,582 - HMPREF1078_RS13650 0.11 +1.4 178,582 - HMPREF1078_RS13650 0.11 -0.7 178,583 + HMPREF1078_RS13650 0.11 -1.5 178,583 + HMPREF1078_RS13650 0.11 +1.4 178,584 - HMPREF1078_RS13650 0.11 -2.2 178,584 - HMPREF1078_RS13650 0.11 -0.6 178,587 + HMPREF1078_RS13650 0.12 -2.1 178,588 - HMPREF1078_RS13650 0.12 +0.1 178,726 - HMPREF1078_RS13650 0.33 +1.4 178,751 + HMPREF1078_RS13650 0.37 +1.4 178,751 + HMPREF1078_RS13650 0.37 -2.3 178,751 + HMPREF1078_RS13650 0.37 -2.1 178,751 + HMPREF1078_RS13650 0.37 -1.5 178,752 - HMPREF1078_RS13650 0.37 +3.4 178,752 - HMPREF1078_RS13650 0.37 -1.7 178,752 - HMPREF1078_RS13650 0.37 -0.6 178,785 - HMPREF1078_RS13650 0.43 -1.6 178,785 - HMPREF1078_RS13650 0.43 +0.4 178,785 - HMPREF1078_RS13650 0.43 -1.9 178,785 - HMPREF1078_RS13650 0.43 -0.8 178,804 + HMPREF1078_RS13650 0.46 -2.7 178,842 + HMPREF1078_RS13650 0.51 -1.9 178,851 + HMPREF1078_RS13650 0.53 -1.1 178,852 - HMPREF1078_RS13650 0.53 -2.6 178,856 + HMPREF1078_RS13650 0.54 -2.6 178,857 - HMPREF1078_RS13650 0.54 -2.6 178,857 - HMPREF1078_RS13650 0.54 -0.7 179,035 - HMPREF1078_RS13650 0.82 -1.5 179,035 - HMPREF1078_RS13650 0.82 -0.4 179,035 - HMPREF1078_RS13650 0.82 +0.1 179,057 + HMPREF1078_RS13650 0.85 +2.4 179,103 - +0.8 179,137 - -1.2 179,137 - -0.8 179,151 + +0.8 179,152 - -2.3 179,162 + -1.7 179,163 - +0.8 179,167 - -1.4 179,173 + -2.1 179,175 + +0.4 179,183 - +0.3 179,231 + +0.4 179,276 + -1.6 179,276 + -2.5 179,277 - -0.8 179,277 - -1.8 179,277 - +0.5 179,295 + +1.8 179,328 - +0.1 179,343 - +1.4 179,358 + +1.7 179,358 + +0.7 179,384 + -0.7 179,384 + -0.6 179,384 + -1.6 179,385 - +2.4 179,389 + -0.8 179,390 - +0.1 179,486 - -0.4 179,486 - -0.8 179,486 - -1.1 179,503 + +0.1 179,504 - +2.4 179,505 + +1.4 179,508 + +0.8 179,508 + -0.6 179,508 + +0.8 179,508 + -0.7 179,516 - +1.1 179,517 + -0.4 179,517 + -1.9 179,517 + -0.9 179,517 + -1.2 179,518 - -1.8 179,518 - +0.4 179,518 - +1.8 179,519 + +1.1 179,519 + +3.4 179,519 + +0.1 179,519 + -2.2 179,520 - -1.3 179,523 - -1.7 179,529 + +1.4 179,530 - -1.4 179,553 + -0.2 179,553 + -0.9 179,554 - -1.8 179,554 - +0.8 179,556 + -2.6 179,557 - -0.6 179,567 + -1.2 179,568 - +1.4 179,597 + -2.4 179,598 - -1.4 179,598 - +0.4 179,634 + -3.8 179,742 - HMPREF1078_RS13655 0.17 -1.7 179,742 - HMPREF1078_RS13655 0.17 -0.1 179,763 + HMPREF1078_RS13655 0.19 -1.6 179,763 + HMPREF1078_RS13655 0.19 -0.6 179,770 - HMPREF1078_RS13655 0.20 -1.0 179,774 + HMPREF1078_RS13655 0.20 -0.6 179,774 + HMPREF1078_RS13655 0.20 +0.4 179,839 + HMPREF1078_RS13655 0.25 +0.1 179,898 + HMPREF1078_RS13655 0.30 +0.7 179,965 + HMPREF1078_RS13655 0.36 +0.1 179,988 + HMPREF1078_RS13655 0.38 -1.6 179,988 + HMPREF1078_RS13655 0.38 +2.8 179,989 - HMPREF1078_RS13655 0.38 -1.5 179,989 - HMPREF1078_RS13655 0.38 -1.5 179,989 - HMPREF1078_RS13655 0.38 -1.3 180,051 - HMPREF1078_RS13655 0.43 -1.4
Or see this region's nucleotide sequence